Wall clock time and date at job start Mon Mar 30 2020 01:46:10
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50699 * 1
3 3 N 1.32073 * 118.75321 * 2 1
4 4 C 1.32032 * 121.30604 * 179.97438 * 3 2 1
5 5 C 1.50701 * 120.57043 * 180.02562 * 4 3 2
6 6 C 1.40882 * 118.85052 * 359.97438 * 4 3 2
7 7 C 1.41072 * 121.09423 * 179.97438 * 6 4 3
8 8 H 1.07999 * 120.00317 * 315.30003 * 7 6 4
9 9 C 1.39966 * 119.99883 * 135.30012 * 7 6 4
10 10 N 1.30860 * 119.99759 * 162.43857 * 9 7 6
11 11 Si 1.86800 * 119.99882 * 342.43603 * 9 7 6
12 12 H 1.48497 * 109.47094 * 94.63943 * 11 9 7
13 13 H 1.48503 * 109.46676 * 214.64113 * 11 9 7
14 14 H 1.48498 * 109.47086 * 334.63761 * 11 9 7
15 15 C 1.42118 * 117.80822 * 359.97438 * 6 4 3
16 16 N 1.37785 * 120.70337 * 179.72314 * 15 6 4
17 17 N 1.31808 * 118.75121 * 179.97438 * 2 1 3
18 18 H 1.09000 * 109.47267 * 89.99718 * 1 2 3
19 19 H 1.08999 * 109.46973 * 209.99988 * 1 2 3
20 20 H 1.08997 * 109.47350 * 329.99870 * 1 2 3
21 21 H 1.08998 * 109.46751 * 269.97480 * 5 4 3
22 22 H 1.08998 * 109.46882 * 29.97731 * 5 4 3
23 23 H 1.08999 * 109.46739 * 149.97785 * 5 4 3
24 24 H 0.96997 * 119.99684 * 179.97438 * 10 9 7
25 25 H 0.96990 * 120.00432 * 352.18879 * 16 15 6
26 26 H 0.97002 * 119.99528 * 172.18189 * 16 15 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.1423 1.1579 0.0000
4 6 3.4613 1.2167 0.0005
5 6 4.1692 2.5471 0.0011
6 6 4.1954 0.0142 0.0016
7 6 5.6061 0.0218 0.0016
8 1 6.1426 0.6890 -0.6568
9 6 6.3105 -0.8352 0.8551
10 7 7.5748 -1.0879 0.6308
11 14 5.4459 -1.6182 2.3141
12 1 4.9541 -2.9665 1.9328
13 1 6.3988 -1.7408 3.4465
14 1 4.2978 -0.7698 2.7228
15 6 3.4679 -1.2066 0.0027
16 7 4.1256 -2.4174 -0.0019
17 7 2.1410 -1.1556 0.0005
18 1 -0.3634 0.0001 -1.0277
19 1 -0.3633 -0.8900 0.5138
20 1 -0.3634 0.8899 0.5138
21 1 4.3406 2.8678 -1.0264
22 1 3.5538 3.2858 0.5145
23 1 5.1252 2.4497 0.5156
24 1 8.0630 -1.6815 1.2225
25 1 5.0878 -2.4463 -0.1201
26 1 3.6261 -3.2410 0.1131
RHF calculation, no. of doubly occupied orbitals= 35
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000238511006.mol2 26
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:46:10
Heat of formation + Delta-G solvation = 14.719492 kcal
Electronic energy + Delta-G solvation = -12077.446089 eV
Core-core repulsion = 9961.817592 eV
Total energy + Delta-G solvation = -2115.628497 eV
No. of doubly occupied orbitals = 35
Molecular weight
(most abundant/longest-lived isotopes) = 193.091 amu
Computer time = 0.21 seconds
Orbital eigenvalues (eV)
-41.37636 -37.00325 -35.66601 -34.24955 -31.83443 -30.33119 -29.43528 -25.81019
-23.08396 -22.32605 -20.00107 -18.63257 -17.48507 -17.07799 -16.22333 -15.82021
-15.03653 -14.71746 -14.32657 -13.99353 -13.81220 -13.44646 -13.09595 -13.03255
-12.84072 -12.72947 -12.21168 -11.73435 -11.24282 -11.06037 -10.06554 -9.83518
-8.99637 -8.74696 -6.40261 0.45446 0.78786 1.27314 1.33436 1.39310
2.06503 2.55695 2.84498 3.37810 3.64396 3.86010 4.36826 4.65299
4.80557 4.86659 4.92003 4.95493 5.01449 5.16054 5.38444 5.45459
5.88486 5.98956 6.21385 6.57214 6.63872 6.76497 7.13200 7.81245
8.24802
Molecular weight = 193.09amu
Principal moments of inertia in cm(-1)
A = 0.041047 B = 0.017204 C = 0.013948
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 681.981792 B = 1627.169453 C = 2007.013920
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.056 4.056
2 C 0.232 3.768
3 N -0.547 5.547
4 C 0.070 3.930
5 C -0.069 4.069
6 C -0.078 4.078
7 C -0.469 4.469
8 H 0.068 0.932
9 C 0.055 3.945
10 N -0.846 5.846
11 Si 0.953 3.047
12 H -0.228 1.228
13 H -0.287 1.287
14 H -0.299 1.299
15 C 0.347 3.653
16 N -0.833 5.833
17 N -0.579 5.579
18 H 0.082 0.918
19 H 0.080 0.920
20 H 0.083 0.917
21 H 0.070 0.930
22 H 0.074 0.926
23 H 0.069 0.931
24 H 0.292 0.708
25 H 0.412 0.588
26 H 0.404 0.596
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.036 -1.329 1.271 6.310
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.114 4.114
2 C -0.035 4.035
3 N -0.265 5.265
4 C -0.074 4.074
5 C -0.127 4.127
6 C -0.088 4.088
7 C -0.502 4.502
8 H 0.086 0.914
9 C -0.158 4.158
10 N -0.474 5.474
11 Si 0.779 3.221
12 H -0.152 1.152
13 H -0.214 1.214
14 H -0.226 1.226
15 C 0.099 3.901
16 N -0.386 5.386
17 N -0.305 5.305
18 H 0.100 0.900
19 H 0.099 0.901
20 H 0.102 0.898
21 H 0.089 0.911
22 H 0.093 0.907
23 H 0.088 0.912
24 H 0.103 0.897
25 H 0.247 0.753
26 H 0.235 0.765
Dipole moment (debyes) X Y Z Total
from point charges -6.763 -1.355 1.290 7.017
hybrid contribution 1.260 -0.602 0.469 1.473
sum -5.503 -1.957 1.759 6.100
Atomic orbital electron populations
1.20296 0.84351 1.03423 1.03380 1.23093 0.98530 0.82696 0.99138
1.67590 1.10351 1.30163 1.18445 1.22083 0.88857 0.96155 1.00262
1.20317 0.99209 0.90958 1.02177 1.18848 0.95786 0.91721 1.02473
1.18725 0.88920 1.20906 1.21639 0.91351 1.26379 0.95298 0.94703
0.99452 1.69714 1.10588 1.30622 1.36459 0.85887 0.77340 0.81113
0.77786 1.15158 1.21436 1.22568 1.19059 0.88370 0.87877 0.94763
1.42209 1.10783 1.04357 1.81203 1.67387 1.07959 1.31690 1.23452
0.89952 0.90091 0.89847 0.91126 0.90711 0.91245 0.89707 0.75347
0.76517
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.06 -1.78 10.30 71.24 0.73 -1.05 15
2 C 0.23 10.23 7.64 138.66 1.06 11.29 15
3 N -0.55 -25.47 10.23 -174.29 -1.78 -27.25 15
4 C 0.07 3.36 6.90 43.18 0.30 3.66 15
5 C -0.07 -2.80 9.81 71.24 0.70 -2.10 15
6 C -0.08 -3.98 4.68 -20.97 -0.10 -4.08 15
7 C -0.47 -24.66 7.91 23.38 0.19 -24.48 15
8 H 0.07 3.85 7.97 -2.91 -0.02 3.83 15
9 C 0.06 2.76 4.19 85.26 0.36 3.11 15
10 N -0.85 -42.84 13.93 21.83 0.30 -42.54 15
11 Si 0.95 41.83 24.23 68.60 1.66 43.49 15
12 H -0.23 -8.82 6.06 99.48 0.60 -8.21 15
13 H -0.29 -12.15 7.11 99.48 0.71 -11.44 15
14 H -0.30 -14.91 7.11 99.48 0.71 -14.21 15
15 C 0.35 16.58 6.37 134.10 0.85 17.44 15
16 N -0.83 -34.41 5.85 -54.03 -0.32 -34.73 15
17 N -0.58 -26.77 10.33 -183.90 -1.90 -28.67 15
18 H 0.08 2.32 8.14 -2.39 -0.02 2.30 15
19 H 0.08 2.33 8.14 -2.39 -0.02 2.31 15
20 H 0.08 2.40 8.14 -2.39 -0.02 2.38 15
21 H 0.07 2.64 8.14 -2.39 -0.02 2.62 15
22 H 0.07 2.69 8.14 -2.39 -0.02 2.67 15
23 H 0.07 2.89 7.21 -2.39 -0.02 2.87 15
24 H 0.29 13.40 8.30 -92.71 -0.77 12.63 15
25 H 0.41 17.30 5.66 -92.72 -0.52 16.77 15
26 H 0.40 14.21 8.95 -92.71 -0.83 13.38 15
Total: -1.00 -59.80 221.43 1.81 -57.99
By element:
Atomic # 1 Polarization: 28.15 SS G_CDS: -0.24 Total: 27.90 kcal
Atomic # 6 Polarization: -0.29 SS G_CDS: 4.09 Total: 3.80 kcal
Atomic # 7 Polarization: -129.49 SS G_CDS: -3.70 Total: -133.18 kcal
Atomic # 14 Polarization: 41.83 SS G_CDS: 1.66 Total: 43.49 kcal
Total: -59.80 1.81 -57.99 kcal
The number of atoms in the molecule is 26
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000238511006.mol2 26
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 72.712 kcal
(2) G-P(sol) polarization free energy of solvation -59.801 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.911 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.808 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.992 kcal
(6) G-S(sol) free energy of system = (1) + (5) 14.719 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.21 seconds