Wall clock time and date at job start Mon Mar 30 2020 01:46:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.32073 * 118.75321 * 2 1 4 4 C 1.32032 * 121.30604 * 179.97438 * 3 2 1 5 5 C 1.50701 * 120.57043 * 180.02562 * 4 3 2 6 6 C 1.40882 * 118.85052 * 359.97438 * 4 3 2 7 7 C 1.41072 * 121.09423 * 179.97438 * 6 4 3 8 8 H 1.07999 * 120.00317 * 315.30003 * 7 6 4 9 9 C 1.39966 * 119.99883 * 135.30012 * 7 6 4 10 10 N 1.30860 * 119.99759 * 162.43857 * 9 7 6 11 11 Si 1.86800 * 119.99882 * 342.43603 * 9 7 6 12 12 H 1.48497 * 109.47094 * 94.63943 * 11 9 7 13 13 H 1.48503 * 109.46676 * 214.64113 * 11 9 7 14 14 H 1.48498 * 109.47086 * 334.63761 * 11 9 7 15 15 C 1.42118 * 117.80822 * 359.97438 * 6 4 3 16 16 N 1.37785 * 120.70337 * 179.72314 * 15 6 4 17 17 N 1.31808 * 118.75121 * 179.97438 * 2 1 3 18 18 H 1.09000 * 109.47267 * 89.99718 * 1 2 3 19 19 H 1.08999 * 109.46973 * 209.99988 * 1 2 3 20 20 H 1.08997 * 109.47350 * 329.99870 * 1 2 3 21 21 H 1.08998 * 109.46751 * 269.97480 * 5 4 3 22 22 H 1.08998 * 109.46882 * 29.97731 * 5 4 3 23 23 H 1.08999 * 109.46739 * 149.97785 * 5 4 3 24 24 H 0.96997 * 119.99684 * 179.97438 * 10 9 7 25 25 H 0.96990 * 120.00432 * 352.18879 * 16 15 6 26 26 H 0.97002 * 119.99528 * 172.18189 * 16 15 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1423 1.1579 0.0000 4 6 3.4613 1.2167 0.0005 5 6 4.1692 2.5471 0.0011 6 6 4.1954 0.0142 0.0016 7 6 5.6061 0.0218 0.0016 8 1 6.1426 0.6890 -0.6568 9 6 6.3105 -0.8352 0.8551 10 7 7.5748 -1.0879 0.6308 11 14 5.4459 -1.6182 2.3141 12 1 4.9541 -2.9665 1.9328 13 1 6.3988 -1.7408 3.4465 14 1 4.2978 -0.7698 2.7228 15 6 3.4679 -1.2066 0.0027 16 7 4.1256 -2.4174 -0.0019 17 7 2.1410 -1.1556 0.0005 18 1 -0.3634 0.0001 -1.0277 19 1 -0.3633 -0.8900 0.5138 20 1 -0.3634 0.8899 0.5138 21 1 4.3406 2.8678 -1.0264 22 1 3.5538 3.2858 0.5145 23 1 5.1252 2.4497 0.5156 24 1 8.0630 -1.6815 1.2225 25 1 5.0878 -2.4463 -0.1201 26 1 3.6261 -3.2410 0.1131 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238511006.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:10 Heat of formation + Delta-G solvation = 14.719492 kcal Electronic energy + Delta-G solvation = -12077.446089 eV Core-core repulsion = 9961.817592 eV Total energy + Delta-G solvation = -2115.628497 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.091 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.37636 -37.00325 -35.66601 -34.24955 -31.83443 -30.33119 -29.43528 -25.81019 -23.08396 -22.32605 -20.00107 -18.63257 -17.48507 -17.07799 -16.22333 -15.82021 -15.03653 -14.71746 -14.32657 -13.99353 -13.81220 -13.44646 -13.09595 -13.03255 -12.84072 -12.72947 -12.21168 -11.73435 -11.24282 -11.06037 -10.06554 -9.83518 -8.99637 -8.74696 -6.40261 0.45446 0.78786 1.27314 1.33436 1.39310 2.06503 2.55695 2.84498 3.37810 3.64396 3.86010 4.36826 4.65299 4.80557 4.86659 4.92003 4.95493 5.01449 5.16054 5.38444 5.45459 5.88486 5.98956 6.21385 6.57214 6.63872 6.76497 7.13200 7.81245 8.24802 Molecular weight = 193.09amu Principal moments of inertia in cm(-1) A = 0.041047 B = 0.017204 C = 0.013948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.981792 B = 1627.169453 C = 2007.013920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.232 3.768 3 N -0.547 5.547 4 C 0.070 3.930 5 C -0.069 4.069 6 C -0.078 4.078 7 C -0.469 4.469 8 H 0.068 0.932 9 C 0.055 3.945 10 N -0.846 5.846 11 Si 0.953 3.047 12 H -0.228 1.228 13 H -0.287 1.287 14 H -0.299 1.299 15 C 0.347 3.653 16 N -0.833 5.833 17 N -0.579 5.579 18 H 0.082 0.918 19 H 0.080 0.920 20 H 0.083 0.917 21 H 0.070 0.930 22 H 0.074 0.926 23 H 0.069 0.931 24 H 0.292 0.708 25 H 0.412 0.588 26 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.036 -1.329 1.271 6.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.035 4.035 3 N -0.265 5.265 4 C -0.074 4.074 5 C -0.127 4.127 6 C -0.088 4.088 7 C -0.502 4.502 8 H 0.086 0.914 9 C -0.158 4.158 10 N -0.474 5.474 11 Si 0.779 3.221 12 H -0.152 1.152 13 H -0.214 1.214 14 H -0.226 1.226 15 C 0.099 3.901 16 N -0.386 5.386 17 N -0.305 5.305 18 H 0.100 0.900 19 H 0.099 0.901 20 H 0.102 0.898 21 H 0.089 0.911 22 H 0.093 0.907 23 H 0.088 0.912 24 H 0.103 0.897 25 H 0.247 0.753 26 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -6.763 -1.355 1.290 7.017 hybrid contribution 1.260 -0.602 0.469 1.473 sum -5.503 -1.957 1.759 6.100 Atomic orbital electron populations 1.20296 0.84351 1.03423 1.03380 1.23093 0.98530 0.82696 0.99138 1.67590 1.10351 1.30163 1.18445 1.22083 0.88857 0.96155 1.00262 1.20317 0.99209 0.90958 1.02177 1.18848 0.95786 0.91721 1.02473 1.18725 0.88920 1.20906 1.21639 0.91351 1.26379 0.95298 0.94703 0.99452 1.69714 1.10588 1.30622 1.36459 0.85887 0.77340 0.81113 0.77786 1.15158 1.21436 1.22568 1.19059 0.88370 0.87877 0.94763 1.42209 1.10783 1.04357 1.81203 1.67387 1.07959 1.31690 1.23452 0.89952 0.90091 0.89847 0.91126 0.90711 0.91245 0.89707 0.75347 0.76517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.78 10.30 71.24 0.73 -1.05 15 2 C 0.23 10.23 7.64 138.66 1.06 11.29 15 3 N -0.55 -25.47 10.23 -174.29 -1.78 -27.25 15 4 C 0.07 3.36 6.90 43.18 0.30 3.66 15 5 C -0.07 -2.80 9.81 71.24 0.70 -2.10 15 6 C -0.08 -3.98 4.68 -20.97 -0.10 -4.08 15 7 C -0.47 -24.66 7.91 23.38 0.19 -24.48 15 8 H 0.07 3.85 7.97 -2.91 -0.02 3.83 15 9 C 0.06 2.76 4.19 85.26 0.36 3.11 15 10 N -0.85 -42.84 13.93 21.83 0.30 -42.54 15 11 Si 0.95 41.83 24.23 68.60 1.66 43.49 15 12 H -0.23 -8.82 6.06 99.48 0.60 -8.21 15 13 H -0.29 -12.15 7.11 99.48 0.71 -11.44 15 14 H -0.30 -14.91 7.11 99.48 0.71 -14.21 15 15 C 0.35 16.58 6.37 134.10 0.85 17.44 15 16 N -0.83 -34.41 5.85 -54.03 -0.32 -34.73 15 17 N -0.58 -26.77 10.33 -183.90 -1.90 -28.67 15 18 H 0.08 2.32 8.14 -2.39 -0.02 2.30 15 19 H 0.08 2.33 8.14 -2.39 -0.02 2.31 15 20 H 0.08 2.40 8.14 -2.39 -0.02 2.38 15 21 H 0.07 2.64 8.14 -2.39 -0.02 2.62 15 22 H 0.07 2.69 8.14 -2.39 -0.02 2.67 15 23 H 0.07 2.89 7.21 -2.39 -0.02 2.87 15 24 H 0.29 13.40 8.30 -92.71 -0.77 12.63 15 25 H 0.41 17.30 5.66 -92.72 -0.52 16.77 15 26 H 0.40 14.21 8.95 -92.71 -0.83 13.38 15 Total: -1.00 -59.80 221.43 1.81 -57.99 By element: Atomic # 1 Polarization: 28.15 SS G_CDS: -0.24 Total: 27.90 kcal Atomic # 6 Polarization: -0.29 SS G_CDS: 4.09 Total: 3.80 kcal Atomic # 7 Polarization: -129.49 SS G_CDS: -3.70 Total: -133.18 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 1.66 Total: 43.49 kcal Total: -59.80 1.81 -57.99 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238511006.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.712 kcal (2) G-P(sol) polarization free energy of solvation -59.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds