Wall clock time and date at job start Mon Mar 30 2020 02:37:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30869 * 1 3 3 Si 1.86796 * 119.99964 * 2 1 4 4 H 1.48501 * 109.47149 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47504 * 299.99980 * 3 2 1 6 6 H 1.48494 * 109.47246 * 60.00055 * 3 2 1 7 7 C 1.40070 * 119.99968 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99966 * 179.97438 * 7 2 1 9 9 C 1.39914 * 120.00288 * 0.02562 * 7 2 1 10 10 S 1.75897 * 125.40504 * 0.25739 * 9 7 2 11 11 C 1.75794 * 91.12699 * 180.02562 * 10 9 7 12 12 C 1.34541 * 110.14639 * 359.69946 * 11 10 9 13 13 C 1.36805 * 115.33907 * 0.23403 * 12 11 10 14 14 C 1.50705 * 122.89967 * 179.97438 * 13 12 11 15 15 C 1.53007 * 117.49590 * 8.72616 * 14 13 12 16 16 C 1.52994 * 117.50029 * 300.06588 * 14 13 12 17 17 H 0.97003 * 119.99829 * 359.97438 * 1 2 3 18 18 H 1.08002 * 124.93024 * 179.97438 * 11 10 9 19 19 H 1.07993 * 122.33148 * 180.20750 * 12 11 10 20 20 H 1.08998 * 115.54989 * 154.39032 * 14 13 12 21 21 H 1.08999 * 117.49628 * 359.97438 * 15 14 13 22 22 H 1.08994 * 117.50077 * 145.02045 * 15 14 13 23 23 H 1.08994 * 117.50174 * 214.97302 * 16 14 13 24 24 H 1.09003 * 117.49697 * 359.97438 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 3.7027 1.3464 -0.0006 5 1 1.8840 2.3965 -1.2125 6 1 1.8839 2.3964 1.2124 7 6 2.0090 -1.2130 -0.0005 8 1 3.0891 -1.2130 -0.0010 9 6 1.3095 -2.4248 -0.0016 10 16 -0.4416 -2.5905 -0.0089 11 6 -0.3104 -4.3436 -0.0047 12 6 0.9837 -4.7114 -0.0050 13 6 1.8850 -3.6821 -0.0033 14 6 3.3762 -3.8998 -0.0027 15 6 3.8815 -5.3291 -0.2101 16 6 3.9764 -4.6761 1.1711 17 1 -0.4850 0.8401 0.0004 18 1 -1.1472 -5.0263 -0.0066 19 1 1.2898 -5.7470 -0.0061 20 1 3.9697 -3.0897 -0.4265 21 1 3.1354 -6.1119 -0.3465 22 1 4.8077 -5.4592 -0.7699 23 1 4.9649 -4.3770 1.5194 24 1 3.2927 -5.0290 1.9433 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238551619.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:10 Heat of formation + Delta-G solvation = 13.977589 kcal Electronic energy + Delta-G solvation = -9827.071232 eV Core-core repulsion = 8024.152022 eV Total energy + Delta-G solvation = -1802.919210 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 194.046 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.18313 -36.23828 -35.35385 -30.99147 -27.07284 -24.13513 -23.08401 -22.38817 -20.10006 -18.46378 -17.16018 -16.73049 -16.08443 -15.08145 -14.34452 -14.04002 -13.79418 -13.64361 -12.98814 -12.82608 -12.24773 -12.16925 -11.95097 -11.69306 -11.38429 -11.12055 -10.92894 -10.67934 -9.30666 -8.77162 -8.53495 -6.36819 0.81899 1.38575 1.52267 1.56188 1.75472 2.09305 2.22763 2.27864 3.00628 3.46903 4.17083 4.29202 4.50985 4.65713 4.83509 4.95325 5.03339 5.05398 5.28817 5.40470 5.51113 5.76103 5.96392 6.21785 6.31768 6.70442 6.74450 8.10313 Molecular weight = 194.05amu Principal moments of inertia in cm(-1) A = 0.036585 B = 0.015308 C = 0.011120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.158223 B = 1828.728997 C = 2517.438085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.012 3.988 3 Si 1.007 2.993 4 H -0.253 1.253 5 H -0.262 1.262 6 H -0.262 1.262 7 C -0.410 4.410 8 H 0.099 0.901 9 C 0.013 3.987 10 S 0.091 5.909 11 C -0.430 4.430 12 C -0.069 4.069 13 C -0.314 4.314 14 C -0.063 4.063 15 C -0.175 4.175 16 C -0.181 4.181 17 H 0.305 0.695 18 H 0.132 0.868 19 H 0.110 0.890 20 H 0.087 0.913 21 H 0.085 0.915 22 H 0.108 0.892 23 H 0.104 0.896 24 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.606 0.226 0.228 4.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C -0.206 4.206 3 Si 0.826 3.174 4 H -0.176 1.176 5 H -0.186 1.186 6 H -0.187 1.187 7 C -0.446 4.446 8 H 0.117 0.883 9 C -0.107 4.107 10 S 0.350 5.650 11 C -0.564 4.564 12 C -0.098 4.098 13 C -0.320 4.320 14 C -0.083 4.083 15 C -0.212 4.212 16 C -0.218 4.218 17 H 0.118 0.882 18 H 0.150 0.850 19 H 0.128 0.872 20 H 0.106 0.894 21 H 0.103 0.897 22 H 0.126 0.874 23 H 0.122 0.878 24 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 3.144 1.262 0.221 3.396 hybrid contribution 0.984 -0.608 0.022 1.157 sum 4.128 0.654 0.243 4.187 Atomic orbital electron populations 1.68949 1.09023 1.31868 1.33861 1.27185 0.95845 1.05718 0.91827 0.84729 0.79113 0.74337 0.79173 1.17597 1.18644 1.18664 1.19502 0.95807 0.89413 1.39830 0.88315 1.22065 0.94799 0.96562 0.97269 1.84328 1.06427 0.97508 1.76721 1.25559 0.99541 1.01604 1.29732 1.19373 0.92222 0.98044 1.00134 1.18131 0.93981 0.91192 1.28704 1.20102 0.91595 0.94200 1.02398 1.22990 1.02694 0.95833 0.99692 1.22972 1.01828 1.05441 0.91537 0.88248 0.85018 0.87210 0.89446 0.89700 0.87385 0.87772 0.90639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -40.07 10.65 21.86 0.23 -39.84 14 2 C 0.01 0.55 5.50 85.28 0.47 1.02 14 3 Si 1.01 35.67 29.56 68.60 2.03 37.70 14 4 H -0.25 -8.67 7.11 99.48 0.71 -7.96 14 5 H -0.26 -8.88 7.11 99.48 0.71 -8.17 14 6 H -0.26 -8.90 7.11 99.48 0.71 -8.19 14 7 C -0.41 -21.29 8.94 23.12 0.21 -21.09 14 8 H 0.10 4.86 6.84 -2.91 -0.02 4.84 14 9 C 0.01 0.72 6.19 22.69 0.14 0.86 14 10 S 0.09 4.80 20.27 -56.49 -1.14 3.66 14 11 C -0.43 -21.63 11.23 66.97 0.75 -20.87 14 12 C -0.07 -3.38 9.43 21.09 0.20 -3.18 14 13 C -0.31 -15.95 5.62 -20.19 -0.11 -16.06 14 14 C -0.06 -2.68 5.73 -11.54 -0.07 -2.75 14 15 C -0.18 -6.04 9.94 30.62 0.30 -5.74 14 16 C -0.18 -6.48 10.21 30.62 0.31 -6.17 14 17 H 0.30 13.40 8.30 -92.71 -0.77 12.63 14 18 H 0.13 6.02 8.06 -2.91 -0.02 6.00 14 19 H 0.11 4.84 6.53 -2.91 -0.02 4.82 14 20 H 0.09 3.74 7.24 -2.39 -0.02 3.72 14 21 H 0.08 2.95 6.51 -2.39 -0.02 2.93 14 22 H 0.11 3.11 8.14 -2.39 -0.02 3.09 14 23 H 0.10 3.18 8.14 -2.39 -0.02 3.16 14 24 H 0.07 2.85 8.14 -2.39 -0.02 2.83 14 Total: -1.00 -57.28 222.49 4.52 -52.76 By element: Atomic # 1 Polarization: 18.50 SS G_CDS: 1.20 Total: 19.70 kcal Atomic # 6 Polarization: -76.18 SS G_CDS: 2.20 Total: -73.98 kcal Atomic # 7 Polarization: -40.07 SS G_CDS: 0.23 Total: -39.84 kcal Atomic # 14 Polarization: 35.67 SS G_CDS: 2.03 Total: 37.70 kcal Atomic # 16 Polarization: 4.80 SS G_CDS: -1.14 Total: 3.66 kcal Total: -57.28 4.52 -52.76 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238551619.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.737 kcal (2) G-P(sol) polarization free energy of solvation -57.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds