Wall clock time and date at job start Mon Mar 30 2020 02:48:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 119.99803 * 2 1 4 4 H 1.48502 * 109.46984 * 239.99798 * 3 2 1 5 5 H 1.48497 * 109.47331 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47024 * 120.00267 * 3 2 1 7 7 C 1.37881 * 119.99956 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99498 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00067 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47365 * 180.02562 * 9 7 2 11 11 C 1.50694 * 109.47365 * 179.97438 * 10 9 7 12 12 O 1.21325 * 120.00320 * 359.97438 * 11 10 9 13 13 C 1.46593 * 119.99742 * 180.02562 * 11 10 9 14 14 C 1.47198 * 127.23664 * 180.24416 * 13 11 10 15 15 C 1.34083 * 105.94366 * 180.17565 * 14 13 11 16 16 O 1.34240 * 109.22165 * 359.63219 * 15 14 13 17 17 C 1.33553 * 110.98464 * 0.24264 * 16 15 14 18 18 H 0.96996 * 120.00314 * 359.97438 * 1 2 3 19 19 H 1.09001 * 109.47385 * 59.99945 * 9 7 2 20 20 H 1.09002 * 109.46866 * 299.99672 * 9 7 2 21 21 H 1.09001 * 109.46961 * 59.99627 * 10 9 7 22 22 H 1.09009 * 109.46685 * 300.00330 * 10 9 7 23 23 H 1.07999 * 127.02936 * 0.04830 * 14 13 11 24 24 H 1.08002 * 125.39311 * 179.90463 * 15 14 13 25 25 H 1.07991 * 125.83937 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6964 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4918 -4.9672 0.0001 12 8 0.2785 -4.9672 0.0010 13 6 2.2248 -6.2367 0.0008 14 6 1.6553 -7.5940 -0.0035 15 6 2.7017 -8.4324 0.0030 16 8 3.8392 -7.7196 0.0026 17 6 3.5823 -6.4090 0.0012 18 1 -0.4850 0.8400 0.0004 19 1 0.6240 -2.5567 -0.8903 20 1 0.6248 -2.5571 0.8897 21 1 2.8719 -3.6043 0.8894 22 1 2.8720 -3.6043 -0.8906 23 1 0.6087 -7.8602 -0.0086 24 1 2.6393 -9.5107 0.0036 25 1 4.3198 -5.6202 0.0011 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238632341.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:07 Heat of formation + Delta-G solvation = -36.163489 kcal Electronic energy + Delta-G solvation = -11291.824316 eV Core-core repulsion = 9043.977954 eV Total energy + Delta-G solvation = -2247.846362 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 194.073 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.41293 -38.51294 -33.49298 -32.74339 -31.17071 -29.68004 -26.02387 -23.46100 -21.41387 -20.93660 -18.88409 -17.54907 -16.26110 -16.06791 -15.10367 -14.51026 -14.42644 -14.24319 -13.73605 -12.86931 -12.27410 -12.21557 -12.04775 -11.12923 -10.91606 -10.62323 -9.96902 -9.74632 -9.68547 -9.17988 -8.91073 -8.72597 -8.32943 -5.96764 -4.01336 1.38697 2.08726 2.98544 3.34093 3.38840 3.40441 3.44151 4.40580 4.54102 4.81684 4.98751 5.38070 5.40517 5.71144 5.97122 6.08323 6.21802 6.29683 6.39801 6.97939 7.01088 7.71569 7.82966 8.04514 8.16507 8.42317 9.06323 9.62315 11.14256 Molecular weight = 194.07amu Principal moments of inertia in cm(-1) A = 0.080935 B = 0.007091 C = 0.006551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 345.871933 B = 3947.468975 C = 4272.893618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.058 3.942 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.527 4.527 8 H 0.056 0.944 9 C 0.031 3.969 10 C -0.155 4.155 11 C 0.412 3.588 12 O -0.451 6.451 13 C -0.260 4.260 14 C -0.173 4.173 15 C -0.053 4.053 16 O -0.180 6.180 17 C 0.030 3.970 18 H 0.262 0.738 19 H 0.022 0.978 20 H 0.022 0.978 21 H 0.085 0.915 22 H 0.085 0.915 23 H 0.155 0.845 24 H 0.204 0.796 25 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.649 -13.632 -0.004 15.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.566 4.566 8 H 0.074 0.926 9 C -0.007 4.007 10 C -0.192 4.192 11 C 0.289 3.711 12 O -0.326 6.326 13 C -0.263 4.263 14 C -0.192 4.192 15 C -0.118 4.118 16 O -0.076 6.076 17 C -0.040 4.040 18 H 0.071 0.929 19 H 0.041 0.959 20 H 0.041 0.959 21 H 0.103 0.897 22 H 0.103 0.897 23 H 0.173 0.827 24 H 0.221 0.779 25 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 7.113 -13.645 -0.003 15.387 hybrid contribution 0.289 0.933 0.000 0.976 sum 7.401 -12.712 -0.004 14.710 Atomic orbital electron populations 1.69980 1.06081 1.26737 1.50124 1.25036 0.94835 0.99261 0.95275 0.86643 0.79544 0.83140 0.78551 1.20232 1.21285 1.20240 1.21181 0.92905 0.90996 1.51489 0.92598 1.18943 0.93371 0.89884 0.98457 1.22161 1.01136 0.93363 1.02573 1.22190 0.89003 0.88926 0.70979 1.90506 1.16322 1.89831 1.35939 1.22629 0.94180 0.96354 1.13089 1.22973 1.00399 0.91130 1.04743 1.23826 0.82470 0.97619 1.07913 1.83742 1.34964 1.17838 1.71041 1.24744 0.96722 0.83138 0.99378 0.92870 0.95916 0.95924 0.89726 0.89723 0.82701 0.77917 0.76615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.50 13.29 55.43 0.74 -26.77 15 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 15 3 Si 0.89 21.66 29.54 -169.99 -5.02 16.63 15 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 15 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 15 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 15 7 C -0.53 -14.96 9.11 -34.44 -0.31 -15.28 15 8 H 0.06 1.48 7.74 -52.49 -0.41 1.08 15 9 C 0.03 0.82 4.26 -27.88 -0.12 0.70 15 10 C -0.16 -3.14 5.12 -27.88 -0.14 -3.28 15 11 C 0.41 8.14 7.13 -30.94 -0.22 7.92 15 12 O -0.45 -10.66 16.61 5.52 0.09 -10.57 15 13 C -0.26 -4.10 6.29 -103.40 -0.65 -4.75 15 14 C -0.17 -2.39 11.01 -37.41 -0.41 -2.80 15 15 C -0.05 -0.57 12.02 29.27 0.35 -0.22 15 16 O -0.18 -2.13 10.51 7.84 0.08 -2.05 15 17 C 0.03 0.37 11.64 30.23 0.35 0.72 15 18 H 0.26 7.60 8.31 -40.82 -0.34 7.26 15 19 H 0.02 0.66 8.10 -51.93 -0.42 0.24 15 20 H 0.02 0.66 8.10 -51.93 -0.42 0.24 15 21 H 0.08 1.54 8.14 -51.93 -0.42 1.12 15 22 H 0.08 1.54 8.14 -51.92 -0.42 1.12 15 23 H 0.16 2.02 8.06 -52.49 -0.42 1.60 15 24 H 0.20 1.30 8.06 -52.49 -0.42 0.88 15 25 H 0.22 1.93 8.01 -52.49 -0.42 1.51 15 LS Contribution 235.97 15.07 3.56 3.56 Total: -1.00 -34.06 235.97 -4.30 -38.36 By element: Atomic # 1 Polarization: -1.27 SS G_CDS: -2.49 Total: -3.76 kcal Atomic # 6 Polarization: -14.15 SS G_CDS: -1.25 Total: -15.41 kcal Atomic # 7 Polarization: -27.50 SS G_CDS: 0.74 Total: -26.77 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: 0.17 Total: -12.62 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -34.06 -4.30 -38.36 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238632341.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.194 kcal (2) G-P(sol) polarization free energy of solvation -34.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds