Wall clock time and date at job start Mon Mar 30 2020 02:48:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 119.99803 * 2 1 4 4 H 1.48502 * 109.46984 * 239.99798 * 3 2 1 5 5 H 1.48497 * 109.47331 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47024 * 120.00267 * 3 2 1 7 7 C 1.37881 * 119.99956 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99498 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00067 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47365 * 180.02562 * 9 7 2 11 11 C 1.50694 * 109.47365 * 179.97438 * 10 9 7 12 12 O 1.21325 * 120.00320 * 359.97438 * 11 10 9 13 13 C 1.46593 * 119.99742 * 180.02562 * 11 10 9 14 14 C 1.47198 * 127.23664 * 180.24416 * 13 11 10 15 15 C 1.34083 * 105.94366 * 180.17565 * 14 13 11 16 16 O 1.34240 * 109.22165 * 359.63219 * 15 14 13 17 17 C 1.33553 * 110.98464 * 0.24264 * 16 15 14 18 18 H 0.96996 * 120.00314 * 359.97438 * 1 2 3 19 19 H 1.09001 * 109.47385 * 59.99945 * 9 7 2 20 20 H 1.09002 * 109.46866 * 299.99672 * 9 7 2 21 21 H 1.09001 * 109.46961 * 59.99627 * 10 9 7 22 22 H 1.09009 * 109.46685 * 300.00330 * 10 9 7 23 23 H 1.07999 * 127.02936 * 0.04830 * 14 13 11 24 24 H 1.08002 * 125.39311 * 179.90463 * 15 14 13 25 25 H 1.07991 * 125.83937 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6964 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4918 -4.9672 0.0001 12 8 0.2785 -4.9672 0.0010 13 6 2.2248 -6.2367 0.0008 14 6 1.6553 -7.5940 -0.0035 15 6 2.7017 -8.4324 0.0030 16 8 3.8392 -7.7196 0.0026 17 6 3.5823 -6.4090 0.0012 18 1 -0.4850 0.8400 0.0004 19 1 0.6240 -2.5567 -0.8903 20 1 0.6248 -2.5571 0.8897 21 1 2.8719 -3.6043 0.8894 22 1 2.8720 -3.6043 -0.8906 23 1 0.6087 -7.8602 -0.0086 24 1 2.6393 -9.5107 0.0036 25 1 4.3198 -5.6202 0.0011 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238632341.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:07 Heat of formation + Delta-G solvation = -59.468563 kcal Electronic energy + Delta-G solvation = -11292.834900 eV Core-core repulsion = 9043.977954 eV Total energy + Delta-G solvation = -2248.856946 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 194.073 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -43.40288 -40.12412 -35.59415 -33.91461 -32.99776 -30.87094 -27.90965 -25.09931 -22.77230 -22.25136 -20.17732 -18.98541 -18.16704 -17.07930 -16.54503 -16.29938 -16.08954 -15.78867 -14.94463 -14.23184 -14.11588 -13.84440 -13.35670 -13.03936 -12.77510 -12.50795 -11.91378 -11.68384 -11.33914 -10.79746 -10.59009 -10.56290 -9.69764 -8.18400 -6.32815 0.18950 1.09857 1.42303 1.46959 1.54648 2.08852 2.10380 2.42045 3.14491 3.23021 3.80223 3.96619 4.34784 4.52384 4.56504 4.68512 4.84171 5.07480 5.25467 5.36446 5.47903 5.60473 5.83074 6.03343 6.16220 6.69989 6.87434 7.37651 8.94248 Molecular weight = 194.07amu Principal moments of inertia in cm(-1) A = 0.080935 B = 0.007091 C = 0.006551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 345.871933 B = 3947.468975 C = 4272.893618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.009 4.009 3 Si 0.976 3.024 4 H -0.261 1.261 5 H -0.289 1.289 6 H -0.261 1.261 7 C -0.543 4.543 8 H 0.079 0.921 9 C 0.033 3.967 10 C -0.146 4.146 11 C 0.416 3.584 12 O -0.512 6.512 13 C -0.306 4.306 14 C -0.210 4.210 15 C -0.022 4.022 16 O -0.174 6.174 17 C 0.067 3.933 18 H 0.263 0.737 19 H -0.020 1.020 20 H -0.020 1.020 21 H 0.113 0.887 22 H 0.113 0.887 23 H 0.149 0.851 24 H 0.251 0.749 25 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.056 -14.353 -0.002 18.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.206 4.206 3 Si 0.799 3.201 4 H -0.186 1.186 5 H -0.215 1.215 6 H -0.186 1.186 7 C -0.581 4.581 8 H 0.097 0.903 9 C -0.004 4.004 10 C -0.182 4.182 11 C 0.297 3.703 12 O -0.391 6.391 13 C -0.309 4.309 14 C -0.229 4.229 15 C -0.087 4.087 16 O -0.069 6.069 17 C -0.003 4.003 18 H 0.071 0.929 19 H -0.001 1.001 20 H -0.001 1.001 21 H 0.131 0.869 22 H 0.131 0.869 23 H 0.166 0.834 24 H 0.267 0.733 25 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges 10.563 -14.394 -0.002 17.854 hybrid contribution -0.751 1.066 -0.001 1.303 sum 9.812 -13.329 -0.003 16.551 Atomic orbital electron populations 1.70172 1.08406 1.27903 1.51502 1.26180 0.95732 1.04092 0.94617 0.85347 0.78019 0.77180 0.79542 1.18583 1.21471 1.18595 1.21703 0.94118 0.91484 1.50778 0.90277 1.18776 0.94007 0.93141 0.94491 1.22035 0.99845 0.91154 1.05209 1.22388 0.88317 0.90523 0.69031 1.90487 1.18630 1.90599 1.39421 1.22306 0.95804 0.95175 1.17582 1.23100 1.01308 0.91105 1.07385 1.24561 0.80852 0.99030 1.04283 1.83817 1.35190 1.17593 1.70268 1.25323 0.95723 0.84034 0.95240 0.92865 1.00129 1.00139 0.86881 0.86873 0.83367 0.73327 0.72986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.08 13.29 21.45 0.28 -59.80 15 2 C -0.01 -0.52 5.46 84.66 0.46 -0.06 15 3 Si 0.98 44.23 29.54 68.60 2.03 46.25 15 4 H -0.26 -11.13 7.11 99.48 0.71 -10.42 15 5 H -0.29 -13.06 7.11 99.48 0.71 -12.36 15 6 H -0.26 -11.14 7.11 99.48 0.71 -10.43 15 7 C -0.54 -30.91 9.11 25.60 0.23 -30.68 15 8 H 0.08 4.03 7.74 -2.91 -0.02 4.01 15 9 C 0.03 1.86 4.26 29.85 0.13 1.98 15 10 C -0.15 -5.83 5.12 29.85 0.15 -5.68 15 11 C 0.42 16.82 7.13 27.87 0.20 17.02 15 12 O -0.51 -25.90 16.61 -3.17 -0.05 -25.95 15 13 C -0.31 -9.31 6.29 -19.07 -0.12 -9.43 15 14 C -0.21 -5.56 11.01 23.68 0.26 -5.30 15 15 C -0.02 -0.40 12.02 66.87 0.80 0.41 15 16 O -0.17 -3.34 10.51 5.13 0.05 -3.29 15 17 C 0.07 1.40 11.64 67.49 0.79 2.18 15 18 H 0.26 15.75 8.31 -92.71 -0.77 14.98 15 19 H -0.02 -1.25 8.10 -2.39 -0.02 -1.27 15 20 H -0.02 -1.26 8.10 -2.39 -0.02 -1.28 15 21 H 0.11 3.88 8.14 -2.39 -0.02 3.86 15 22 H 0.11 3.88 8.14 -2.38 -0.02 3.86 15 23 H 0.15 3.98 8.06 -2.91 -0.02 3.96 15 24 H 0.25 1.90 8.06 -2.91 -0.02 1.88 15 25 H 0.25 3.16 8.01 -2.92 -0.02 3.14 15 Total: -1.00 -78.82 235.97 6.40 -72.42 By element: Atomic # 1 Polarization: -1.26 SS G_CDS: 1.18 Total: -0.08 kcal Atomic # 6 Polarization: -32.46 SS G_CDS: 2.90 Total: -29.56 kcal Atomic # 7 Polarization: -60.08 SS G_CDS: 0.28 Total: -59.80 kcal Atomic # 8 Polarization: -29.24 SS G_CDS: 0.00 Total: -29.24 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.25 kcal Total: -78.82 6.40 -72.42 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238632341.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.956 kcal (2) G-P(sol) polarization free energy of solvation -78.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds