Wall clock time and date at job start Mon Mar 30 2020 02:43:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86795 * 120.00145 * 2 1 4 4 H 1.48506 * 109.47023 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47320 * 299.99919 * 3 2 1 6 6 H 1.48497 * 109.47454 * 60.00267 * 3 2 1 7 7 C 1.37880 * 119.99652 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99928 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00032 * 359.97438 * 7 2 1 10 10 H 1.09010 * 109.46860 * 300.00090 * 9 7 2 11 11 O 1.42896 * 109.47397 * 60.00041 * 9 7 2 12 12 C 1.50697 * 109.47015 * 180.02562 * 9 7 2 13 13 C 1.38169 * 120.02482 * 264.99770 * 12 9 7 14 14 C 1.38242 * 120.05457 * 179.97438 * 13 12 9 15 15 C 1.38295 * 120.11401 * 359.97438 * 14 13 12 16 16 C 1.38122 * 120.05026 * 0.02562 * 15 14 13 17 17 C 1.38711 * 120.02969 * 84.97816 * 12 9 7 18 18 O 1.35897 * 120.05660 * 0.04096 * 17 12 9 19 19 H 0.97003 * 119.99585 * 359.97438 * 1 2 3 20 20 H 0.96707 * 113.99901 * 60.00169 * 11 9 7 21 21 H 1.07998 * 119.97385 * 359.97438 * 13 12 9 22 22 H 1.07997 * 119.94707 * 180.02562 * 14 13 12 23 23 H 1.07997 * 119.97026 * 179.74858 * 15 14 13 24 24 H 1.08002 * 120.02294 * 179.97438 * 16 15 14 25 25 H 0.96699 * 113.99705 * 90.00409 * 18 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8906 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 1 0.6246 -2.5570 0.8898 11 8 0.4289 -2.5746 -1.1670 12 6 2.2302 -3.6446 -0.0005 13 6 2.6001 -4.2379 -1.1923 14 6 3.4988 -5.2884 -1.1930 15 6 4.0301 -5.7478 -0.0017 16 6 3.6634 -5.1580 1.1922 17 6 2.7612 -4.1039 1.1958 18 8 2.3985 -3.5224 2.3692 19 1 -0.4850 0.8401 0.0004 20 1 0.9208 -2.5292 -1.9984 21 1 2.1869 -3.8807 -2.1239 22 1 3.7871 -5.7506 -2.1255 23 1 4.7289 -6.5712 -0.0047 24 1 4.0784 -5.5174 2.1223 25 1 1.6250 -3.9264 2.7859 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238694261.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:41 Heat of formation + Delta-G solvation = -71.264803 kcal Electronic energy + Delta-G solvation = -11932.804093 eV Core-core repulsion = 9683.435624 eV Total energy + Delta-G solvation = -2249.368469 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 194.073 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.24893 -36.08840 -35.42467 -32.14901 -30.46075 -29.28720 -26.52514 -23.26743 -21.86408 -20.35306 -17.85135 -16.89987 -15.90267 -15.16867 -14.71775 -14.50815 -14.02680 -13.31482 -12.89633 -12.57190 -11.83289 -11.61162 -11.37139 -10.96493 -10.90507 -10.84854 -10.15348 -10.02828 -9.18337 -8.67347 -8.38194 -8.22475 -7.78078 -6.00520 -4.17393 1.82874 1.96195 3.28918 3.36654 3.42342 4.22580 4.44671 4.86619 5.24613 5.39182 5.45170 5.64240 5.87492 6.11302 6.29979 6.44739 6.57000 6.85271 7.02222 7.04936 7.41627 7.71558 7.85055 8.12818 8.32814 8.83439 9.29285 9.56298 11.03353 Molecular weight = 194.07amu Principal moments of inertia in cm(-1) A = 0.045567 B = 0.011903 C = 0.011276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.333046 B = 2351.851690 C = 2482.449693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.078 3.922 3 Si 0.893 3.107 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.551 4.551 8 H 0.056 0.944 9 C 0.263 3.737 10 H 0.070 0.930 11 O -0.562 6.562 12 C -0.095 4.095 13 C -0.108 4.108 14 C -0.133 4.133 15 C -0.133 4.133 16 C -0.152 4.152 17 C 0.103 3.897 18 O -0.487 6.487 19 H 0.260 0.740 20 H 0.346 0.654 21 H 0.122 0.878 22 H 0.115 0.885 23 H 0.115 0.885 24 H 0.118 0.882 25 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.739 -8.586 0.026 9.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.128 4.128 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.589 4.589 8 H 0.075 0.925 9 C 0.206 3.794 10 H 0.087 0.913 11 O -0.365 6.365 12 C -0.095 4.095 13 C -0.126 4.126 14 C -0.151 4.151 15 C -0.151 4.151 16 C -0.170 4.170 17 C 0.058 3.942 18 O -0.295 6.295 19 H 0.070 0.930 20 H 0.190 0.810 21 H 0.140 0.860 22 H 0.133 0.867 23 H 0.133 0.867 24 H 0.136 0.864 25 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 4.574 -8.151 0.381 9.355 hybrid contribution 0.642 0.685 -0.191 0.958 sum 5.216 -7.466 0.190 9.110 Atomic orbital electron populations 1.70084 1.05899 1.26419 1.47471 1.25036 0.94760 0.99148 0.93846 0.86542 0.80285 0.83510 0.77656 1.19673 1.20869 1.20788 1.21470 0.93145 0.90256 1.53990 0.92525 1.18361 0.86734 0.87964 0.86360 0.91251 1.86613 1.38207 1.96232 1.15452 1.21805 0.98110 0.97382 0.92250 1.20851 0.97707 0.96125 0.97946 1.21038 0.98457 0.97998 0.97587 1.20781 1.01285 1.00657 0.92369 1.21312 1.00450 0.96831 0.98433 1.18297 0.97226 0.92944 0.85714 1.84898 1.50768 1.59381 1.34476 0.92991 0.80962 0.85984 0.86721 0.86720 0.86410 0.76588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.64 12.84 55.43 0.71 -24.93 15 2 C 0.08 2.21 5.40 -17.82 -0.10 2.12 15 3 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 15 4 H -0.27 -6.60 7.11 56.52 0.40 -6.20 15 5 H -0.28 -6.76 7.11 56.52 0.40 -6.35 15 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 15 7 C -0.55 -15.60 8.75 -34.44 -0.30 -15.90 15 8 H 0.06 1.64 7.74 -52.49 -0.41 1.23 15 9 C 0.26 6.82 2.79 -29.04 -0.08 6.74 15 10 H 0.07 1.94 7.69 -51.92 -0.40 1.54 15 11 O -0.56 -14.49 12.38 -35.23 -0.44 -14.93 15 12 C -0.09 -2.08 5.02 -104.47 -0.52 -2.61 15 13 C -0.11 -2.07 9.30 -39.61 -0.37 -2.44 15 14 C -0.13 -2.15 10.04 -39.56 -0.40 -2.55 15 15 C -0.13 -2.07 10.04 -39.60 -0.40 -2.47 15 16 C -0.15 -2.59 9.99 -39.43 -0.39 -2.99 15 17 C 0.10 2.08 6.68 -39.22 -0.26 1.82 15 18 O -0.49 -9.63 12.64 -19.42 -0.25 -9.88 15 19 H 0.26 7.29 8.31 -40.82 -0.34 6.95 15 20 H 0.35 7.82 7.32 45.56 0.33 8.16 15 21 H 0.12 2.17 6.41 -52.49 -0.34 1.83 15 22 H 0.11 1.51 8.06 -52.49 -0.42 1.08 15 23 H 0.11 1.42 8.06 -52.49 -0.42 0.99 15 24 H 0.12 1.72 8.06 -52.49 -0.42 1.30 15 25 H 0.38 5.61 9.06 45.56 0.41 6.02 15 LS Contribution 227.42 15.07 3.43 3.43 Total: -1.00 -32.51 227.42 -5.18 -37.69 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -0.80 Total: 10.17 kcal Atomic # 6 Polarization: -15.45 SS G_CDS: -2.82 Total: -18.27 kcal Atomic # 7 Polarization: -25.64 SS G_CDS: 0.71 Total: -24.93 kcal Atomic # 8 Polarization: -24.13 SS G_CDS: -0.68 Total: -24.81 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 3.43 Total: 3.43 kcal Total: -32.51 -5.18 -37.69 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238694261.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.573 kcal (2) G-P(sol) polarization free energy of solvation -32.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds