Wall clock time and date at job start Mon Mar 30 2020 02:43:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86795 * 120.00145 * 2 1 4 4 H 1.48506 * 109.47023 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47320 * 299.99919 * 3 2 1 6 6 H 1.48497 * 109.47454 * 60.00267 * 3 2 1 7 7 C 1.37880 * 119.99652 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99928 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00032 * 359.97438 * 7 2 1 10 10 H 1.09010 * 109.46860 * 300.00090 * 9 7 2 11 11 O 1.42896 * 109.47397 * 60.00041 * 9 7 2 12 12 C 1.50697 * 109.47015 * 180.02562 * 9 7 2 13 13 C 1.38169 * 120.02482 * 264.99770 * 12 9 7 14 14 C 1.38242 * 120.05457 * 179.97438 * 13 12 9 15 15 C 1.38295 * 120.11401 * 359.97438 * 14 13 12 16 16 C 1.38122 * 120.05026 * 0.02562 * 15 14 13 17 17 C 1.38711 * 120.02969 * 84.97816 * 12 9 7 18 18 O 1.35897 * 120.05660 * 0.04096 * 17 12 9 19 19 H 0.97003 * 119.99585 * 359.97438 * 1 2 3 20 20 H 0.96707 * 113.99901 * 60.00169 * 11 9 7 21 21 H 1.07998 * 119.97385 * 359.97438 * 13 12 9 22 22 H 1.07997 * 119.94707 * 180.02562 * 14 13 12 23 23 H 1.07997 * 119.97026 * 179.74858 * 15 14 13 24 24 H 1.08002 * 120.02294 * 179.97438 * 16 15 14 25 25 H 0.96699 * 113.99705 * 90.00409 * 18 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8906 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 1 0.6246 -2.5570 0.8898 11 8 0.4289 -2.5746 -1.1670 12 6 2.2302 -3.6446 -0.0005 13 6 2.6001 -4.2379 -1.1923 14 6 3.4988 -5.2884 -1.1930 15 6 4.0301 -5.7478 -0.0017 16 6 3.6634 -5.1580 1.1922 17 6 2.7612 -4.1039 1.1958 18 8 2.3985 -3.5224 2.3692 19 1 -0.4850 0.8401 0.0004 20 1 0.9208 -2.5292 -1.9984 21 1 2.1869 -3.8807 -2.1239 22 1 3.7871 -5.7506 -2.1255 23 1 4.7289 -6.5712 -0.0047 24 1 4.0784 -5.5174 2.1223 25 1 1.6250 -3.9264 2.7859 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238694261.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:40 Heat of formation + Delta-G solvation = -96.745137 kcal Electronic energy + Delta-G solvation = -11933.909003 eV Core-core repulsion = 9683.435624 eV Total energy + Delta-G solvation = -2250.473379 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 194.073 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.72622 -37.73587 -37.14651 -34.31958 -32.04716 -30.71517 -28.48121 -25.13284 -23.27065 -21.98101 -19.44762 -18.91348 -17.45568 -16.81045 -16.59722 -16.18437 -15.62392 -14.83218 -14.56330 -14.47953 -13.46759 -13.38941 -12.92729 -12.85396 -12.68441 -12.46398 -12.09792 -11.61195 -11.08428 -10.78895 -10.33750 -9.64643 -9.32459 -8.16029 -6.41519 0.45259 0.55015 1.36392 1.37510 1.50471 2.36815 2.87918 3.07603 3.48814 4.08324 4.12482 4.21758 4.34365 4.63683 4.72634 5.08053 5.13471 5.33493 5.53919 5.60688 5.66811 5.91796 6.01166 6.09405 6.66389 6.96514 7.26905 7.44818 8.87288 Molecular weight = 194.07amu Principal moments of inertia in cm(-1) A = 0.045567 B = 0.011903 C = 0.011276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.333046 B = 2351.851690 C = 2482.449693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.026 3.974 3 Si 0.961 3.039 4 H -0.270 1.270 5 H -0.272 1.272 6 H -0.276 1.276 7 C -0.563 4.563 8 H 0.044 0.956 9 C 0.268 3.732 10 H 0.033 0.967 11 O -0.576 6.576 12 C -0.134 4.134 13 C -0.120 4.120 14 C -0.126 4.126 15 C -0.117 4.117 16 C -0.151 4.151 17 C 0.081 3.919 18 O -0.507 6.507 19 H 0.263 0.737 20 H 0.357 0.643 21 H 0.126 0.874 22 H 0.154 0.846 23 H 0.160 0.840 24 H 0.145 0.855 25 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.693 -9.746 -0.457 11.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.176 4.176 3 Si 0.785 3.215 4 H -0.195 1.195 5 H -0.198 1.198 6 H -0.202 1.202 7 C -0.601 4.601 8 H 0.063 0.937 9 C 0.211 3.789 10 H 0.051 0.949 11 O -0.381 6.381 12 C -0.135 4.135 13 C -0.138 4.138 14 C -0.144 4.144 15 C -0.135 4.135 16 C -0.169 4.169 17 C 0.037 3.963 18 O -0.319 6.319 19 H 0.072 0.928 20 H 0.203 0.797 21 H 0.143 0.857 22 H 0.171 0.829 23 H 0.178 0.822 24 H 0.162 0.838 25 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 6.528 -9.324 -0.103 11.383 hybrid contribution 0.057 0.926 -0.042 0.929 sum 6.586 -8.398 -0.145 10.673 Atomic orbital electron populations 1.70199 1.07416 1.27449 1.48597 1.25873 0.95598 1.02728 0.93386 0.85494 0.78792 0.79126 0.78084 1.19491 1.19758 1.20165 1.21718 0.92659 0.91974 1.53772 0.93748 1.17993 0.86724 0.89243 0.84978 0.94932 1.86530 1.39012 1.96380 1.16163 1.21525 0.99490 0.97925 0.94540 1.21030 0.98668 0.97121 0.96995 1.21455 0.96740 0.96485 0.99737 1.21340 1.00373 1.00599 0.91195 1.21614 0.99204 0.95577 1.00532 1.18598 0.98390 0.94250 0.85054 1.84825 1.51802 1.60544 1.34682 0.92765 0.79661 0.85659 0.82878 0.82245 0.83760 0.74758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.78 12.84 21.45 0.28 -54.50 15 2 C 0.03 1.52 5.40 84.65 0.46 1.98 15 3 Si 0.96 45.15 29.54 68.60 2.03 47.17 15 4 H -0.27 -12.50 7.11 99.48 0.71 -11.80 15 5 H -0.27 -12.26 7.11 99.48 0.71 -11.55 15 6 H -0.28 -12.63 7.11 99.48 0.71 -11.92 15 7 C -0.56 -32.79 8.75 25.60 0.22 -32.57 15 8 H 0.04 2.63 7.74 -2.91 -0.02 2.60 15 9 C 0.27 14.45 2.79 29.10 0.08 14.53 15 10 H 0.03 1.96 7.69 -2.38 -0.02 1.94 15 11 O -0.58 -30.75 12.38 -148.98 -1.84 -32.60 15 12 C -0.13 -5.97 5.02 -19.77 -0.10 -6.07 15 13 C -0.12 -4.47 9.30 22.25 0.21 -4.26 15 14 C -0.13 -3.63 10.04 22.28 0.22 -3.41 15 15 C -0.12 -3.12 10.04 22.26 0.22 -2.90 15 16 C -0.15 -4.73 9.99 22.37 0.22 -4.51 15 17 C 0.08 3.28 6.68 22.51 0.15 3.43 15 18 O -0.51 -20.51 12.64 -92.39 -1.17 -21.68 15 19 H 0.26 15.03 8.31 -92.71 -0.77 14.26 15 20 H 0.36 16.66 7.32 -74.05 -0.54 16.12 15 21 H 0.13 4.40 6.41 -2.91 -0.02 4.38 15 22 H 0.15 3.21 8.06 -2.91 -0.02 3.19 15 23 H 0.16 2.87 8.06 -2.91 -0.02 2.85 15 24 H 0.14 3.69 8.06 -2.91 -0.02 3.67 15 25 H 0.40 12.18 9.06 -74.06 -0.67 11.51 15 Total: -1.00 -71.12 227.42 0.99 -70.13 By element: Atomic # 1 Polarization: 25.24 SS G_CDS: 0.01 Total: 25.24 kcal Atomic # 6 Polarization: -35.46 SS G_CDS: 1.69 Total: -33.77 kcal Atomic # 7 Polarization: -54.78 SS G_CDS: 0.28 Total: -54.50 kcal Atomic # 8 Polarization: -51.26 SS G_CDS: -3.01 Total: -54.27 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.17 kcal Total: -71.12 0.99 -70.13 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238694261.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.612 kcal (2) G-P(sol) polarization free energy of solvation -71.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds