Wall clock time and date at job start Mon Mar 30 2020 02:28:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50703 * 115.55974 * 2 1 4 4 H 1.07995 * 120.00187 * 99.50734 * 3 2 1 5 5 C 1.37879 * 119.99681 * 279.49828 * 3 2 1 6 6 N 1.31524 * 119.99877 * 5.33223 * 5 3 2 7 7 Si 1.86798 * 120.00055 * 185.33316 * 5 3 2 8 8 H 1.48498 * 109.46929 * 359.97438 * 7 5 3 9 9 H 1.48492 * 109.47133 * 120.00077 * 7 5 3 10 10 H 1.48501 * 109.46836 * 240.00382 * 7 5 3 11 11 C 1.53001 * 117.49954 * 214.30427 * 2 1 3 12 12 C 1.52999 * 60.00075 * 252.51240 * 11 2 1 13 13 Cl 1.80305 * 117.50009 * 107.48759 * 12 11 2 14 14 Cl 1.80299 * 117.50352 * 252.48883 * 12 11 2 15 15 H 1.08994 * 109.47053 * 199.82610 * 1 2 3 16 16 H 1.08989 * 109.47295 * 319.83245 * 1 2 3 17 17 H 1.08998 * 109.46430 * 79.83138 * 1 2 3 18 18 H 0.97003 * 119.99521 * 179.97438 * 6 5 3 19 19 H 1.09002 * 117.49773 * 145.02636 * 11 2 1 20 20 H 1.08994 * 117.49939 * 0.02562 * 11 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1803 1.3595 0.0000 4 1 2.5526 1.7801 0.9224 5 6 2.2999 2.0664 -1.1777 6 7 1.7546 1.6029 -2.2812 7 14 3.2365 3.6824 -1.2061 8 1 3.7491 3.9813 0.1551 9 1 4.3758 3.5776 -2.1527 10 1 2.3284 4.7731 -1.6431 11 6 2.2365 -1.1211 -0.7649 12 6 2.2365 -1.1209 0.7651 13 17 1.2022 -2.3407 1.5978 14 17 3.7833 -0.7148 1.5978 15 1 -0.3633 -0.9667 0.3485 16 1 -0.3633 0.7852 0.6628 17 1 -0.3632 0.1814 -1.0115 18 1 1.8385 2.1004 -3.1097 19 1 3.1717 -0.8753 -1.2681 20 1 1.6113 -1.8583 -1.2684 RHF calculation, no. of doubly occupied orbitals= 29 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238852658.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:25 Heat of formation + Delta-G solvation = -13.579506 kcal Electronic energy + Delta-G solvation = -8691.575338 eV Core-core repulsion = 6747.151512 eV Total energy + Delta-G solvation = -1944.423826 eV No. of doubly occupied orbitals = 29 Molecular weight (most abundant/longest-lived isotopes) = 193.996 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -38.91683 -36.68215 -36.41421 -33.94136 -29.15233 -27.33730 -22.88668 -21.12357 -18.20132 -16.80925 -16.43472 -15.38935 -14.29236 -13.99925 -13.68996 -13.24031 -12.91344 -12.80193 -12.60496 -12.26282 -11.96000 -11.91921 -11.60045 -11.37338 -10.68171 -10.36238 -10.08476 -8.15560 -6.25061 0.47842 1.42742 1.47322 1.56718 1.68396 2.43751 2.90088 3.16307 3.85214 4.19459 4.76774 4.86848 4.94680 5.15732 5.31358 5.69068 5.79200 6.23980 6.77465 7.42866 8.93486 Molecular weight = 194.00amu Principal moments of inertia in cm(-1) A = 0.050390 B = 0.015262 C = 0.012905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.528886 B = 1834.156425 C = 2169.212507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.065 3.935 3 C -0.507 4.507 4 H 0.061 0.939 5 C 0.036 3.964 6 N -0.902 5.902 7 Si 0.948 3.052 8 H -0.270 1.270 9 H -0.281 1.281 10 H -0.280 1.280 11 C -0.128 4.128 12 C -0.003 4.003 13 Cl -0.124 7.124 14 Cl -0.122 7.122 15 H 0.057 0.943 16 H 0.047 0.953 17 H 0.052 0.948 18 H 0.264 0.736 19 H 0.089 0.911 20 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.158 -4.038 3.406 5.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.063 3.937 3 C -0.545 4.545 4 H 0.079 0.921 5 C -0.165 4.165 6 N -0.539 5.539 7 Si 0.774 3.226 8 H -0.195 1.195 9 H -0.207 1.207 10 H -0.206 1.206 11 C -0.166 4.166 12 C -0.054 4.054 13 Cl -0.098 7.098 14 Cl -0.095 7.095 15 H 0.076 0.924 16 H 0.066 0.934 17 H 0.071 0.929 18 H 0.073 0.927 19 H 0.107 0.893 20 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 0.175 -4.067 3.355 5.276 hybrid contribution 0.624 0.651 -0.067 0.904 sum 0.798 -3.417 3.288 4.808 Atomic orbital electron populations 1.21361 0.93472 1.00426 1.01014 1.19970 0.93055 0.89483 0.91151 1.20605 1.38990 1.00380 0.94477 0.92061 1.25489 0.95572 1.00367 0.95119 1.70070 1.43645 1.40038 1.00147 0.85652 0.78634 0.80141 0.78170 1.19467 1.20709 1.20585 1.23654 1.03544 1.02381 0.87030 1.27767 0.87396 0.99622 0.90576 1.98649 1.69124 1.60077 1.81906 1.98654 1.35253 1.94019 1.81611 0.92421 0.93353 0.92910 0.92720 0.89277 0.87805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.48 9.63 71.98 0.69 -3.78 14 2 C 0.06 2.98 1.85 -52.92 -0.10 2.88 14 3 C -0.51 -25.86 7.89 25.60 0.20 -25.66 14 4 H 0.06 3.20 7.71 -2.91 -0.02 3.18 14 5 C 0.04 1.85 5.42 84.65 0.46 2.31 14 6 N -0.90 -47.79 13.10 21.45 0.28 -47.51 14 7 Si 0.95 41.53 29.54 68.60 2.03 43.55 14 8 H -0.27 -11.74 7.11 99.48 0.71 -11.04 14 9 H -0.28 -12.20 7.11 99.48 0.71 -11.49 14 10 H -0.28 -12.05 7.11 99.48 0.71 -11.34 14 11 C -0.13 -5.47 9.38 30.59 0.29 -5.18 14 12 C 0.00 -0.12 3.60 30.59 0.11 -0.01 14 13 Cl -0.12 -4.43 27.33 -2.72 -0.07 -4.50 14 14 Cl -0.12 -4.94 28.23 -2.72 -0.08 -5.02 14 15 H 0.06 2.16 6.25 -2.39 -0.01 2.15 14 16 H 0.05 2.03 8.13 -2.39 -0.02 2.01 14 17 H 0.05 2.36 8.14 -2.39 -0.02 2.34 14 18 H 0.26 13.37 8.31 -92.71 -0.77 12.60 14 19 H 0.09 4.06 8.14 -2.39 -0.02 4.05 14 20 H 0.10 4.07 8.14 -2.39 -0.02 4.05 14 Total: -1.00 -51.46 212.13 5.05 -46.41 By element: Atomic # 1 Polarization: -4.73 SS G_CDS: 1.24 Total: -3.49 kcal Atomic # 6 Polarization: -31.09 SS G_CDS: 1.65 Total: -29.44 kcal Atomic # 7 Polarization: -47.79 SS G_CDS: 0.28 Total: -47.51 kcal Atomic # 14 Polarization: 41.53 SS G_CDS: 2.03 Total: 43.55 kcal Atomic # 17 Polarization: -9.37 SS G_CDS: -0.15 Total: -9.52 kcal Total: -51.46 5.05 -46.41 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238852658.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.831 kcal (2) G-P(sol) polarization free energy of solvation -51.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds