Wall clock time and date at job start Mon Mar 30 2020 02:49:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38272 * 119.73394 * 2 1 4 4 C 1.38370 * 120.23119 * 179.72653 * 3 2 1 5 5 O 1.35698 * 120.15102 * 180.02562 * 4 3 2 6 6 C 1.41348 * 119.69694 * 359.97438 * 4 3 2 7 7 C 1.41140 * 120.26502 * 180.02562 * 6 4 3 8 8 H 1.08006 * 119.99421 * 334.54455 * 7 6 4 9 9 C 1.39912 * 120.00524 * 154.53695 * 7 6 4 10 10 N 1.30870 * 119.99819 * 343.07856 * 9 7 6 11 11 Si 1.86799 * 120.00089 * 163.06825 * 9 7 6 12 12 H 1.48495 * 109.47216 * 0.02562 * 11 9 7 13 13 H 1.48506 * 109.47016 * 120.00669 * 11 9 7 14 14 H 1.48500 * 109.47168 * 240.00290 * 11 9 7 15 15 C 1.40660 * 119.47889 * 0.02562 * 6 4 3 16 16 C 1.37939 * 119.76289 * 359.97438 * 15 6 4 17 17 O 1.35952 * 119.85133 * 180.02562 * 16 15 6 18 18 H 1.08998 * 109.47459 * 90.00295 * 1 2 3 19 19 H 1.09003 * 109.47542 * 210.00515 * 1 2 3 20 20 H 1.09004 * 109.46929 * 330.00388 * 1 2 3 21 21 H 1.08005 * 119.88376 * 359.74040 * 3 2 1 22 22 H 0.96706 * 113.99437 * 89.99777 * 5 4 3 23 23 H 0.97006 * 120.00115 * 179.97438 * 10 9 7 24 24 H 1.08005 * 120.11834 * 179.97438 * 15 6 4 25 25 H 0.96703 * 114.00291 * 269.97514 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1928 1.2007 0.0000 4 6 3.5764 1.2127 0.0057 5 8 4.2478 2.3919 0.0062 6 6 4.2873 -0.0090 0.0121 7 6 5.6987 -0.0107 0.0185 8 1 6.2415 0.8321 -0.3833 9 6 6.3946 -1.1042 0.5454 10 7 5.7783 -1.9607 1.3194 11 14 8.2034 -1.3415 0.1439 12 1 8.6615 -0.2434 -0.7446 13 1 8.9957 -1.3247 1.3999 14 1 8.3913 -2.6450 -0.5423 15 6 3.5771 -1.2231 0.0120 16 6 2.1978 -1.2096 0.0063 17 8 1.5095 -2.3820 0.0067 18 1 -0.3634 -0.0001 -1.0276 19 1 -0.3634 -0.8899 0.5139 20 1 -0.3633 0.8901 0.5138 21 1 1.6466 2.1324 -0.0042 22 1 4.4387 2.7354 0.8899 23 1 6.2607 -2.7191 1.6844 24 1 4.1098 -2.1626 0.0164 25 1 1.3137 -2.7235 -0.8766 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258062409.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:39 Heat of formation + Delta-G solvation = -104.208825 kcal Electronic energy + Delta-G solvation = -11886.818285 eV Core-core repulsion = 9636.021256 eV Total energy + Delta-G solvation = -2250.797029 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 194.073 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.41640 -38.45331 -36.38455 -35.51132 -32.69195 -29.41198 -29.23134 -25.60352 -23.08313 -22.05891 -19.69353 -18.74857 -17.96938 -17.04200 -16.38395 -15.90325 -15.72905 -14.68481 -14.40194 -13.88343 -13.70110 -13.31448 -13.22947 -12.87470 -12.76680 -12.27151 -11.95905 -11.91298 -11.41331 -11.00558 -10.74933 -9.35311 -9.02510 -8.65876 -6.38883 0.71760 0.90497 1.36715 1.45863 1.52932 2.18097 2.56878 3.37059 3.67888 3.95740 4.40505 4.51196 4.74893 4.95379 5.08018 5.11397 5.26561 5.36374 5.46963 5.71894 5.96264 6.03753 6.17305 6.39951 6.76685 6.82514 7.10334 7.36282 8.25481 Molecular weight = 194.07amu Principal moments of inertia in cm(-1) A = 0.044032 B = 0.013079 C = 0.010413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.753788 B = 2140.271799 C = 2688.409219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.225 4.225 3 C -0.101 4.101 4 C -0.043 4.043 5 O -0.502 6.502 6 C 0.068 3.932 7 C -0.482 4.482 8 H 0.078 0.922 9 C 0.033 3.967 10 N -0.820 5.820 11 Si 0.987 3.013 12 H -0.259 1.259 13 H -0.263 1.263 14 H -0.263 1.263 15 C -0.203 4.203 16 C 0.105 3.895 17 O -0.510 6.510 18 H 0.065 0.935 19 H 0.058 0.942 20 H 0.064 0.936 21 H 0.126 0.874 22 H 0.376 0.624 23 H 0.290 0.710 24 H 0.108 0.892 25 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.900 0.764 -1.751 3.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.227 4.227 3 C -0.120 4.120 4 C -0.088 4.088 5 O -0.311 6.311 6 C 0.065 3.935 7 C -0.511 4.511 8 H 0.096 0.904 9 C -0.182 4.182 10 N -0.446 5.446 11 Si 0.807 3.193 12 H -0.183 1.183 13 H -0.187 1.187 14 H -0.187 1.187 15 C -0.223 4.223 16 C 0.061 3.939 17 O -0.321 6.321 18 H 0.084 0.916 19 H 0.077 0.923 20 H 0.083 0.917 21 H 0.144 0.856 22 H 0.230 0.770 23 H 0.101 0.899 24 H 0.126 0.874 25 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -2.876 0.555 -1.605 3.340 hybrid contribution 0.880 -0.258 0.067 0.920 sum -1.996 0.297 -1.538 2.537 Atomic orbital electron populations 1.20348 0.89605 1.01964 1.01615 1.19767 0.97031 0.91356 1.14526 1.20865 0.92619 0.97463 1.01023 1.18735 0.89956 0.85034 1.15112 1.84655 1.77673 1.35645 1.33080 1.18100 0.94474 0.90870 0.90099 1.19696 0.91700 1.03810 1.35904 0.90435 1.26854 1.05849 0.93786 0.91727 1.69908 1.40725 1.11761 1.22203 0.85093 0.75587 0.79331 0.79308 1.18288 1.18744 1.18735 1.21407 0.92620 0.98443 1.09812 1.18312 0.89404 0.84900 1.01307 1.84685 1.76047 1.37265 1.34144 0.91625 0.92335 0.91680 0.85592 0.77012 0.89916 0.87435 0.74999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.60 9.78 71.24 0.70 -1.91 15 2 C -0.23 -9.76 5.91 -19.60 -0.12 -9.87 15 3 C -0.10 -4.52 9.60 22.31 0.21 -4.30 15 4 C -0.04 -2.17 6.74 23.07 0.16 -2.02 15 5 O -0.50 -23.01 12.79 -90.18 -1.15 -24.17 15 6 C 0.07 3.73 5.58 -21.21 -0.12 3.62 15 7 C -0.48 -26.48 8.71 23.39 0.20 -26.28 15 8 H 0.08 4.23 7.66 -2.91 -0.02 4.21 15 9 C 0.03 1.69 5.15 85.24 0.44 2.13 15 10 N -0.82 -43.40 10.97 21.82 0.24 -43.16 15 11 Si 0.99 38.44 29.59 68.60 2.03 40.47 15 12 H -0.26 -10.01 7.11 99.48 0.71 -9.30 15 13 H -0.26 -9.70 7.11 99.48 0.71 -9.00 15 14 H -0.26 -9.79 7.11 99.48 0.71 -9.09 15 15 C -0.20 -10.95 8.61 22.79 0.20 -10.75 15 16 C 0.10 4.98 6.66 22.45 0.15 5.13 15 17 O -0.51 -20.86 12.51 -93.01 -1.16 -22.03 15 18 H 0.07 1.90 8.14 -2.39 -0.02 1.88 15 19 H 0.06 1.91 7.50 -2.39 -0.02 1.89 15 20 H 0.06 1.91 8.08 -2.38 -0.02 1.89 15 21 H 0.13 4.84 8.06 -2.91 -0.02 4.81 15 22 H 0.38 14.03 9.06 -74.05 -0.67 13.35 15 23 H 0.29 13.80 8.30 -92.70 -0.77 13.03 15 24 H 0.11 6.11 6.20 -2.91 -0.02 6.09 15 25 H 0.39 11.81 9.06 -74.06 -0.67 11.14 15 Total: -1.00 -63.89 225.96 1.66 -62.22 By element: Atomic # 1 Polarization: 31.02 SS G_CDS: -0.11 Total: 30.91 kcal Atomic # 6 Polarization: -46.08 SS G_CDS: 1.82 Total: -44.26 kcal Atomic # 7 Polarization: -43.40 SS G_CDS: 0.24 Total: -43.16 kcal Atomic # 8 Polarization: -43.88 SS G_CDS: -2.32 Total: -46.19 kcal Atomic # 14 Polarization: 38.44 SS G_CDS: 2.03 Total: 40.47 kcal Total: -63.89 1.66 -62.22 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258062409.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.985 kcal (2) G-P(sol) polarization free energy of solvation -63.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds