Wall clock time and date at job start Mon Mar 30 2020 02:43:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86798 * 119.99872 * 2 1 4 4 H 1.48502 * 109.47342 * 269.99871 * 3 2 1 5 5 H 1.48500 * 109.47456 * 29.99620 * 3 2 1 6 6 H 1.48499 * 109.47324 * 149.99926 * 3 2 1 7 7 C 1.39927 * 120.00484 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00765 * 197.87714 * 7 2 1 9 9 C 1.41410 * 119.99283 * 17.87363 * 7 2 1 10 10 C 1.40769 * 120.21335 * 204.40605 * 9 7 2 11 11 C 1.37634 * 119.85445 * 179.75114 * 10 9 7 12 12 C 1.38560 * 120.30320 * 0.54941 * 11 10 9 13 13 C 1.50702 * 119.77904 * 179.72168 * 12 11 10 14 14 O 1.42898 * 109.46937 * 359.72817 * 13 12 11 15 15 C 1.39119 * 120.44318 * 359.44496 * 12 11 10 16 16 O 1.35908 * 119.93142 * 180.29575 * 15 12 11 17 17 C 1.38137 * 120.13600 * 0.28088 * 15 12 11 18 18 H 0.97003 * 120.00016 * 359.97438 * 1 2 3 19 19 H 1.08003 * 120.07802 * 0.02562 * 10 9 7 20 20 H 1.08000 * 119.85025 * 180.26879 * 11 10 9 21 21 H 1.08998 * 109.46971 * 239.72602 * 13 12 11 22 22 H 1.09003 * 109.46776 * 119.72664 * 13 12 11 23 23 H 0.96700 * 113.99994 * 179.97438 * 14 13 12 24 24 H 0.96696 * 113.99723 * 89.99932 * 16 15 12 25 25 H 1.07996 * 120.15522 * 179.97438 * 17 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.4898 2.0465 -1.4001 5 1 1.4397 2.6527 0.6999 6 1 3.5398 1.4403 0.7000 7 6 2.0080 -1.2117 0.0005 8 1 3.0489 -1.2343 0.2877 9 6 1.3521 -2.4070 -0.3748 10 6 1.8261 -3.6499 0.0858 11 6 1.1790 -4.8082 -0.2800 12 6 0.0697 -4.7575 -1.1088 13 6 -0.6260 -6.0336 -1.5069 14 8 0.0446 -7.1470 -0.9131 15 6 -0.4095 -3.5361 -1.5712 16 8 -1.5019 -3.4980 -2.3788 17 6 0.2226 -2.3618 -1.2110 18 1 -0.4850 0.8401 0.0004 19 1 2.6930 -3.6941 0.7284 20 1 1.5401 -5.7614 0.0770 21 1 -0.6069 -6.1345 -2.5920 22 1 -1.6599 -6.0064 -1.1626 23 1 -0.3502 -8.0035 -1.1266 24 1 -2.3403 -3.4233 -1.9029 25 1 -0.1488 -1.4135 -1.5701 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258101994.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:59 Heat of formation + Delta-G solvation = -107.571438 kcal Electronic energy + Delta-G solvation = -11727.013947 eV Core-core repulsion = 9476.071104 eV Total energy + Delta-G solvation = -2250.942843 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 194.073 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.26553 -37.61520 -37.39966 -35.30983 -32.02029 -30.25626 -28.57623 -25.30945 -23.01137 -21.89253 -19.73833 -18.25182 -18.05381 -17.02479 -16.31430 -15.93988 -15.64338 -15.36724 -14.62308 -14.36229 -13.73311 -13.28710 -13.05214 -12.66046 -12.54564 -12.18816 -11.94566 -11.63163 -11.21731 -11.02550 -10.88154 -9.29819 -9.17240 -8.67595 -6.40392 0.79379 1.00688 1.37749 1.49520 1.51520 2.19203 2.61413 3.49689 3.55990 3.72526 4.35320 4.46927 4.62656 4.72698 4.92214 5.11582 5.27342 5.37961 5.53555 5.80391 6.01213 6.08112 6.23462 6.49021 6.84612 6.88465 7.05444 7.15459 8.28241 Molecular weight = 194.07amu Principal moments of inertia in cm(-1) A = 0.064637 B = 0.010226 C = 0.009062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 433.087755 B = 2737.447499 C = 3088.933224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.035 3.965 3 Si 0.986 3.014 4 H -0.263 1.263 5 H -0.265 1.265 6 H -0.257 1.257 7 C -0.498 4.498 8 H 0.080 0.920 9 C 0.090 3.910 10 C -0.251 4.251 11 C -0.060 4.060 12 C -0.251 4.251 13 C 0.155 3.845 14 O -0.585 6.585 15 C 0.118 3.882 16 O -0.511 6.511 17 C -0.217 4.217 18 H 0.290 0.710 19 H 0.102 0.898 20 H 0.120 0.880 21 H 0.049 0.951 22 H 0.056 0.944 23 H 0.395 0.605 24 H 0.395 0.605 25 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.530 -4.337 -1.418 5.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.181 4.181 3 Si 0.806 3.194 4 H -0.188 1.188 5 H -0.190 1.190 6 H -0.180 1.180 7 C -0.526 4.526 8 H 0.098 0.902 9 C 0.088 3.912 10 C -0.271 4.271 11 C -0.078 4.078 12 C -0.253 4.253 13 C 0.077 3.923 14 O -0.393 6.393 15 C 0.074 3.926 16 O -0.322 6.322 17 C -0.237 4.237 18 H 0.101 0.899 19 H 0.120 0.880 20 H 0.138 0.862 21 H 0.067 0.933 22 H 0.074 0.926 23 H 0.245 0.755 24 H 0.251 0.749 25 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -1.958 -3.769 -1.613 4.543 hybrid contribution -0.472 0.426 0.218 0.672 sum -2.429 -3.343 -1.395 4.361 Atomic orbital electron populations 1.69862 1.09100 1.30780 1.34934 1.26816 0.95555 1.04689 0.91004 0.85144 0.79118 0.75566 0.79531 1.18778 1.18962 1.18028 1.19884 0.98551 0.92347 1.41865 0.90222 1.17853 0.91227 0.93292 0.88854 1.21267 1.04774 0.92994 1.08046 1.20496 0.94391 0.97079 0.95819 1.19721 1.03286 0.93619 1.08629 1.20332 0.93485 0.83070 0.95376 1.86425 1.59093 1.17857 1.75936 1.18136 0.89805 0.91808 0.92865 1.84633 1.16075 1.96296 1.35202 1.21466 1.02176 0.96611 1.03419 0.89934 0.88017 0.86230 0.93258 0.92613 0.75499 0.74863 0.87437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.17 10.96 21.82 0.24 -42.94 15 2 C 0.03 1.77 5.14 85.25 0.44 2.21 15 3 Si 0.99 38.38 29.59 68.60 2.03 40.41 15 4 H -0.26 -10.00 7.11 99.48 0.71 -9.29 15 5 H -0.27 -9.70 7.11 99.48 0.71 -8.99 15 6 H -0.26 -9.69 7.11 99.48 0.71 -8.99 15 7 C -0.50 -27.42 9.05 23.46 0.21 -27.21 15 8 H 0.08 4.22 7.91 -2.91 -0.02 4.19 15 9 C 0.09 5.06 5.57 -21.30 -0.12 4.94 15 10 C -0.25 -13.01 9.79 22.75 0.22 -12.79 15 11 C -0.06 -2.83 9.35 22.20 0.21 -2.62 15 12 C -0.25 -11.39 5.92 -19.57 -0.12 -11.50 15 13 C 0.15 5.35 6.89 71.24 0.49 5.84 15 14 O -0.58 -18.29 12.11 -148.98 -1.80 -20.10 15 15 C 0.12 5.70 6.66 22.46 0.15 5.84 15 16 O -0.51 -20.82 12.91 -92.51 -1.19 -22.02 15 17 C -0.22 -11.88 8.63 22.82 0.20 -11.68 15 18 H 0.29 13.67 8.30 -92.71 -0.77 12.91 15 19 H 0.10 4.95 8.06 -2.91 -0.02 4.92 15 20 H 0.12 5.21 6.98 -2.91 -0.02 5.19 15 21 H 0.05 1.62 8.14 -2.39 -0.02 1.61 15 22 H 0.06 1.70 8.14 -2.39 -0.02 1.68 15 23 H 0.40 7.36 9.12 -74.06 -0.68 6.69 15 24 H 0.39 12.23 9.06 -74.06 -0.67 11.56 15 25 H 0.11 6.17 6.16 -2.91 -0.02 6.15 15 Total: -1.00 -64.81 225.76 0.84 -63.98 By element: Atomic # 1 Polarization: 27.73 SS G_CDS: -0.12 Total: 27.61 kcal Atomic # 6 Polarization: -48.64 SS G_CDS: 1.68 Total: -46.96 kcal Atomic # 7 Polarization: -43.17 SS G_CDS: 0.24 Total: -42.94 kcal Atomic # 8 Polarization: -39.11 SS G_CDS: -3.00 Total: -42.11 kcal Atomic # 14 Polarization: 38.38 SS G_CDS: 2.03 Total: 40.41 kcal Total: -64.81 0.84 -63.98 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258101994.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.593 kcal (2) G-P(sol) polarization free energy of solvation -64.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds