Wall clock time and date at job start Mon Mar 30 2020 02:50:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35283 * 125.46596 * 2 1 4 4 C 1.40122 * 107.22727 * 179.97438 * 3 2 1 5 5 C 1.38067 * 106.51778 * 0.02562 * 4 3 2 6 6 C 1.41307 * 126.11798 * 179.97438 * 5 4 3 7 7 O 1.21446 * 120.00259 * 359.97438 * 6 5 4 8 8 C 1.50708 * 120.00033 * 179.97438 * 6 5 4 9 9 C 1.50703 * 109.46911 * 179.97438 * 8 6 5 10 10 H 1.07997 * 120.00499 * 0.02562 * 9 8 6 11 11 C 1.37882 * 119.99765 * 179.97438 * 9 8 6 12 12 N 1.31515 * 119.99950 * 180.02562 * 11 9 8 13 13 Si 1.86803 * 119.99678 * 0.02562 * 11 9 8 14 14 H 1.48502 * 109.46989 * 90.00203 * 13 11 9 15 15 H 1.48500 * 109.46978 * 209.99834 * 13 11 9 16 16 H 1.48498 * 109.47556 * 329.99878 * 13 11 9 17 17 O 1.33834 * 125.47155 * 179.69574 * 2 1 3 18 18 H 1.08999 * 109.47015 * 90.00221 * 1 2 3 19 19 H 1.09000 * 109.46646 * 209.99373 * 1 2 3 20 20 H 1.09000 * 109.47248 * 330.00091 * 1 2 3 21 21 H 1.08007 * 126.38959 * 359.97438 * 3 2 1 22 22 H 1.07994 * 126.74221 * 180.02562 * 4 3 2 23 23 H 1.08993 * 109.47002 * 299.99181 * 8 6 5 24 24 H 1.08993 * 109.47107 * 59.99732 * 8 6 5 25 25 H 0.96998 * 119.99421 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2920 1.1018 0.0000 4 6 3.6228 0.6633 0.0006 5 6 3.5814 -0.7168 0.0003 6 6 4.6973 -1.5836 0.0003 7 8 5.8221 -1.1255 -0.0001 8 6 4.4918 -3.0766 0.0006 9 6 5.8309 -3.7680 -0.0002 10 1 6.7398 -3.1847 -0.0005 11 6 5.8956 -5.1453 0.0004 12 7 7.0641 -5.7487 0.0002 13 14 4.3234 -6.1541 0.0016 14 1 3.9062 -6.4221 -1.3982 15 1 4.5619 -7.4416 0.7021 16 1 3.2522 -5.4007 0.7017 17 8 2.2837 -1.0899 0.0058 18 1 -0.3633 0.0000 -1.0277 19 1 -0.3632 -0.8901 0.5138 20 1 -0.3634 0.8900 0.5138 21 1 1.9557 2.1282 -0.0004 22 1 4.5073 1.2830 0.0011 23 1 3.9336 -3.3663 0.8907 24 1 3.9330 -3.3666 -0.8892 25 1 7.1096 -6.7176 0.0003 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259445831.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:47 Heat of formation + Delta-G solvation = -28.067131 kcal Electronic energy + Delta-G solvation = -11537.216738 eV Core-core repulsion = 9289.721461 eV Total energy + Delta-G solvation = -2247.495277 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 194.073 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.45163 -38.36751 -33.28106 -32.77741 -31.88631 -29.94948 -27.29464 -23.70440 -21.46420 -21.19502 -19.29528 -17.10513 -16.25282 -16.12694 -14.81489 -14.61644 -13.92747 -13.66580 -13.17907 -13.04043 -12.97392 -12.80171 -12.24325 -11.92233 -11.55481 -10.88505 -10.56313 -9.92745 -9.85524 -9.28852 -8.91246 -8.57148 -8.26480 -6.03264 -4.03337 1.13919 2.42732 2.98429 3.29062 3.36953 3.38261 3.54156 4.42918 4.65454 4.84858 5.03028 5.23002 5.28270 5.29111 5.53960 5.78010 5.84856 6.06523 6.39415 6.51683 6.69875 6.94895 7.13507 7.62071 8.31634 8.55543 9.11863 9.55475 11.09682 Molecular weight = 194.07amu Principal moments of inertia in cm(-1) A = 0.049735 B = 0.010069 C = 0.008425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.854251 B = 2780.126053 C = 3322.533706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.008 3.992 3 C -0.228 4.228 4 C -0.132 4.132 5 C -0.089 4.089 6 C 0.432 3.568 7 O -0.433 6.433 8 C -0.056 4.056 9 C -0.521 4.521 10 H 0.091 0.909 11 C 0.070 3.930 12 N -0.897 5.897 13 Si 0.873 3.127 14 H -0.275 1.275 15 H -0.285 1.285 16 H -0.265 1.265 17 O -0.148 6.148 18 H 0.084 0.916 19 H 0.079 0.921 20 H 0.089 0.911 21 H 0.152 0.848 22 H 0.158 0.842 23 H 0.055 0.945 24 H 0.050 0.950 25 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.454 10.788 0.021 18.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.045 4.045 3 C -0.247 4.247 4 C -0.152 4.152 5 C -0.139 4.139 6 C 0.310 3.690 7 O -0.309 6.309 8 C -0.093 4.093 9 C -0.558 4.558 10 H 0.109 0.891 11 C -0.131 4.131 12 N -0.536 5.536 13 Si 0.700 3.300 14 H -0.201 1.201 15 H -0.211 1.211 16 H -0.189 1.189 17 O -0.043 6.043 18 H 0.102 0.898 19 H 0.098 0.902 20 H 0.107 0.893 21 H 0.169 0.831 22 H 0.175 0.825 23 H 0.073 0.927 24 H 0.068 0.932 25 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -13.856 10.526 0.028 17.400 hybrid contribution -0.800 -0.443 -0.022 0.915 sum -14.655 10.082 0.006 17.789 Atomic orbital electron populations 1.20376 0.84965 1.04242 1.03735 1.22861 0.94384 0.84559 1.02712 1.21510 0.92701 0.99402 1.11096 1.22451 0.98294 0.93623 1.00838 1.22626 0.83310 0.95312 1.12636 1.20399 0.84807 0.92143 0.71644 1.90533 1.24344 1.79658 1.36325 1.20005 1.00687 0.89572 0.99026 1.21024 0.91815 0.91808 1.51197 0.89127 1.24972 0.95972 0.97627 0.94561 1.69901 1.23709 1.09366 1.50595 0.86888 0.84359 0.80031 0.78704 1.20052 1.21076 1.18930 1.84084 1.16367 1.34207 1.69595 0.89775 0.90203 0.89253 0.83068 0.82459 0.92738 0.93178 0.92585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.65 10.41 36.01 0.37 -0.27 15 2 C 0.01 0.11 7.30 -35.36 -0.26 -0.15 15 3 C -0.23 -3.01 10.75 -39.93 -0.43 -3.44 15 4 C -0.13 -2.16 10.61 -38.94 -0.41 -2.57 15 5 C -0.09 -1.71 6.88 -38.48 -0.26 -1.97 15 6 C 0.43 9.97 6.93 -33.14 -0.23 9.74 15 7 O -0.43 -11.06 15.90 5.41 0.09 -10.97 15 8 C -0.06 -1.39 4.25 -29.03 -0.12 -1.52 15 9 C -0.52 -15.52 9.48 -34.44 -0.33 -15.85 15 10 H 0.09 3.00 7.00 -52.49 -0.37 2.63 15 11 C 0.07 2.09 5.47 -17.82 -0.10 1.99 15 12 N -0.90 -28.16 13.96 55.43 0.77 -27.39 15 13 Si 0.87 21.48 27.47 -169.99 -4.67 16.81 15 14 H -0.27 -6.60 7.11 56.52 0.40 -6.20 15 15 H -0.28 -6.93 7.11 56.52 0.40 -6.53 15 16 H -0.26 -6.17 6.54 56.52 0.37 -5.80 15 17 O -0.15 -2.58 10.47 4.92 0.05 -2.53 15 18 H 0.08 0.59 8.14 -51.93 -0.42 0.17 15 19 H 0.08 0.64 8.14 -51.93 -0.42 0.22 15 20 H 0.09 0.54 8.14 -51.93 -0.42 0.12 15 21 H 0.15 1.48 8.06 -52.48 -0.42 1.05 15 22 H 0.16 2.36 8.06 -52.49 -0.42 1.94 15 23 H 0.05 1.32 7.20 -51.93 -0.37 0.94 15 24 H 0.05 1.19 7.57 -51.93 -0.39 0.80 15 25 H 0.26 7.69 8.31 -40.82 -0.34 7.35 15 LS Contribution 231.25 15.07 3.48 3.48 Total: -1.00 -33.48 231.25 -4.46 -37.93 By element: Atomic # 1 Polarization: -0.89 SS G_CDS: -2.41 Total: -3.30 kcal Atomic # 6 Polarization: -12.27 SS G_CDS: -1.77 Total: -14.04 kcal Atomic # 7 Polarization: -28.16 SS G_CDS: 0.77 Total: -27.39 kcal Atomic # 8 Polarization: -13.64 SS G_CDS: 0.14 Total: -13.50 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.67 Total: 16.81 kcal Total LS contribution 3.48 Total: 3.48 kcal Total: -33.48 -4.46 -37.93 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259445831.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.867 kcal (2) G-P(sol) polarization free energy of solvation -33.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds