Wall clock time and date at job start Mon Mar 30 2020 02:56:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30767 * 1 3 3 Si 1.86804 * 119.99789 * 2 1 4 4 H 1.48503 * 109.47044 * 269.99627 * 3 2 1 5 5 H 1.48496 * 109.47108 * 29.99837 * 3 2 1 6 6 H 1.48504 * 109.47075 * 149.99697 * 3 2 1 7 7 C 1.40157 * 120.00264 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00372 * 179.97438 * 7 2 1 9 9 C 1.39430 * 119.99863 * 0.02562 * 7 2 1 10 10 N 1.32939 * 125.56207 * 179.97438 * 9 7 2 11 11 C 1.32802 * 108.88271 * 179.97438 * 10 9 7 12 12 C 1.50697 * 126.17553 * 180.02562 * 11 10 9 13 13 C 1.52997 * 117.49906 * 8.72907 * 12 11 10 14 14 C 1.52993 * 117.50329 * 300.06557 * 12 11 10 15 15 C 1.38481 * 107.64469 * 0.02562 * 11 10 9 16 16 N 1.37629 * 126.52561 * 179.97438 * 15 11 10 17 17 O 1.34831 * 106.94553 * 0.23940 * 15 11 10 18 18 H 0.97004 * 120.00171 * 0.02562 * 1 2 3 19 19 H 1.09002 * 115.55000 * 154.39302 * 12 11 10 20 20 H 1.09001 * 117.50193 * 359.97438 * 13 12 11 21 21 H 1.08999 * 117.49914 * 145.01990 * 13 12 11 22 22 H 1.08993 * 117.50391 * 214.97924 * 14 12 11 23 23 H 1.09000 * 117.49866 * 359.97438 * 14 12 11 24 24 H 0.97001 * 120.00377 * 0.02562 * 16 15 11 25 25 H 0.97005 * 119.99898 * 179.72460 * 16 15 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3077 0.0000 0.0000 3 14 2.2416 1.6178 0.0000 4 1 2.4892 2.0464 -1.4001 5 1 1.4390 2.6527 0.7000 6 1 3.5392 1.4403 0.7001 7 6 2.0085 -1.2138 0.0005 8 1 3.0885 -1.2138 0.0001 9 6 1.3114 -2.4213 0.0005 10 7 1.8614 -3.6316 0.0005 11 6 0.8952 -4.5427 0.0011 12 6 1.0827 -6.0380 0.0018 13 6 2.5016 -6.5719 0.2079 14 6 1.8451 -6.6550 -1.1724 15 6 -0.3155 -3.8706 0.0009 16 7 -1.5685 -4.4401 0.0008 17 8 -0.0332 -2.5522 -0.0052 18 1 -0.4850 0.8401 -0.0004 19 1 0.2613 -6.6145 0.4273 20 1 3.2996 -5.8417 0.3426 21 1 2.6136 -7.5000 0.7685 22 1 1.5255 -7.6376 -1.5193 23 1 2.2107 -5.9795 -1.9457 24 1 -1.6625 -5.4055 0.0013 25 1 -2.3576 -3.8760 0.0047 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259466953.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:42 Heat of formation + Delta-G solvation = 32.649548 kcal Electronic energy + Delta-G solvation = -11825.736902 eV Core-core repulsion = 9613.167249 eV Total energy + Delta-G solvation = -2212.569653 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 194.080 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.86319 -36.45360 -33.96600 -33.05598 -32.20563 -28.22896 -24.95146 -22.18203 -21.74779 -20.43864 -19.12548 -17.36062 -15.99986 -15.67546 -14.93772 -14.69885 -14.47471 -13.99991 -13.14887 -12.07789 -11.37911 -11.30401 -10.93434 -10.88403 -10.77708 -10.42669 -10.27661 -10.07644 -9.70577 -9.24605 -8.86357 -8.45731 -6.78613 -6.48017 -4.27002 2.96511 3.09076 3.14961 3.46050 3.93093 4.06854 4.09896 4.74677 5.36037 5.41943 5.58364 5.62379 5.78625 6.03027 6.16660 6.38199 6.69285 6.84880 6.95955 7.14632 7.45542 7.70205 8.21260 8.44679 8.69658 8.72299 8.89417 10.01066 10.25778 Molecular weight = 194.08amu Principal moments of inertia in cm(-1) A = 0.055088 B = 0.010784 C = 0.009252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.151309 B = 2595.780173 C = 3025.580768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.069 3.931 3 Si 0.929 3.071 4 H -0.268 1.268 5 H -0.277 1.277 6 H -0.259 1.259 7 C -0.432 4.432 8 H 0.109 0.891 9 C 0.337 3.663 10 N -0.585 5.585 11 C -0.046 4.046 12 C -0.049 4.049 13 C -0.168 4.168 14 C -0.180 4.180 15 C 0.119 3.881 16 N -0.845 5.845 17 O -0.192 6.192 18 H 0.282 0.718 19 H 0.095 0.905 20 H 0.103 0.897 21 H 0.082 0.918 22 H 0.083 0.917 23 H 0.091 0.909 24 H 0.405 0.595 25 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.352 -4.982 -0.273 5.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.151 4.151 3 Si 0.753 3.247 4 H -0.193 1.193 5 H -0.202 1.202 6 H -0.183 1.183 7 C -0.469 4.469 8 H 0.127 0.873 9 C 0.147 3.853 10 N -0.318 5.318 11 C -0.172 4.172 12 C -0.068 4.068 13 C -0.206 4.206 14 C -0.217 4.217 15 C -0.036 4.036 16 N -0.398 5.398 17 O -0.082 6.082 18 H 0.092 0.908 19 H 0.113 0.887 20 H 0.121 0.879 21 H 0.100 0.900 22 H 0.101 0.899 23 H 0.110 0.890 24 H 0.235 0.765 25 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -0.760 -4.880 -0.274 4.946 hybrid contribution -1.034 0.718 -0.001 1.258 sum -1.793 -4.162 -0.275 4.540 Atomic orbital electron populations 1.69759 1.07453 1.29452 1.35462 1.26011 0.95004 1.01708 0.92379 0.85970 0.80094 0.79426 0.79245 1.19303 1.20212 1.18282 1.18170 0.94563 0.85769 1.48381 0.87315 1.21589 0.74688 0.93543 0.95433 1.70487 1.30907 0.97457 1.32988 1.19883 0.87599 0.93143 1.16615 1.19788 0.94712 0.90027 1.02224 1.22822 0.97152 1.01721 0.98876 1.22914 1.05554 1.00917 0.92336 1.19486 0.87725 0.83132 1.13260 1.40236 1.02256 1.07647 1.89634 1.84793 1.28164 1.21008 1.74249 0.90759 0.88715 0.87895 0.89973 0.89865 0.89028 0.76467 0.78379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -21.49 11.95 55.56 0.66 -20.82 15 2 C 0.07 1.80 5.50 -17.28 -0.10 1.70 15 3 Si 0.93 19.07 29.56 -169.99 -5.03 14.05 15 4 H -0.27 -5.39 7.11 56.52 0.40 -4.99 15 5 H -0.28 -5.52 7.11 56.52 0.40 -5.12 15 6 H -0.26 -5.21 7.11 56.52 0.40 -4.81 15 7 C -0.43 -12.17 9.43 -38.42 -0.36 -12.53 15 8 H 0.11 2.92 7.85 -52.49 -0.41 2.51 15 9 C 0.34 9.95 7.63 -16.63 -0.13 9.82 15 10 N -0.58 -16.49 10.94 -9.14 -0.10 -16.59 15 11 C -0.05 -1.14 6.71 -82.08 -0.55 -1.69 15 12 C -0.05 -0.96 6.05 -91.78 -0.55 -1.51 15 13 C -0.17 -3.03 10.15 -26.69 -0.27 -3.30 15 14 C -0.18 -3.15 10.24 -26.70 -0.27 -3.42 15 15 C 0.12 2.97 8.59 -14.86 -0.13 2.84 15 16 N -0.85 -15.99 9.03 31.16 0.28 -15.71 15 17 O -0.19 -5.55 9.03 2.01 0.02 -5.53 15 18 H 0.28 6.87 8.29 -40.82 -0.34 6.54 15 19 H 0.09 1.60 7.85 -51.93 -0.41 1.19 15 20 H 0.10 2.09 7.91 -51.93 -0.41 1.68 15 21 H 0.08 1.22 8.14 -51.93 -0.42 0.80 15 22 H 0.08 1.19 8.14 -51.93 -0.42 0.77 15 23 H 0.09 1.78 8.14 -51.93 -0.42 1.35 15 24 H 0.41 6.26 8.43 -40.82 -0.34 5.91 15 25 H 0.39 6.73 8.95 -40.82 -0.37 6.37 15 LS Contribution 229.82 15.07 3.46 3.46 Total: -1.00 -31.62 229.82 -5.40 -37.02 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: -2.34 Total: 12.22 kcal Atomic # 6 Polarization: -5.73 SS G_CDS: -2.36 Total: -8.09 kcal Atomic # 7 Polarization: -53.97 SS G_CDS: 0.85 Total: -53.12 kcal Atomic # 8 Polarization: -5.55 SS G_CDS: 0.02 Total: -5.53 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -5.03 Total: 14.05 kcal Total LS contribution 3.46 Total: 3.46 kcal Total: -31.62 -5.40 -37.02 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259466953.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.670 kcal (2) G-P(sol) polarization free energy of solvation -31.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds