Wall clock time and date at job start Mon Mar 30 2020 02:56:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30767 * 1 3 3 Si 1.86804 * 119.99789 * 2 1 4 4 H 1.48503 * 109.47044 * 269.99627 * 3 2 1 5 5 H 1.48496 * 109.47108 * 29.99837 * 3 2 1 6 6 H 1.48504 * 109.47075 * 149.99697 * 3 2 1 7 7 C 1.40157 * 120.00264 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00372 * 179.97438 * 7 2 1 9 9 C 1.39430 * 119.99863 * 0.02562 * 7 2 1 10 10 N 1.32939 * 125.56207 * 179.97438 * 9 7 2 11 11 C 1.32802 * 108.88271 * 179.97438 * 10 9 7 12 12 C 1.50697 * 126.17553 * 180.02562 * 11 10 9 13 13 C 1.52997 * 117.49906 * 8.72907 * 12 11 10 14 14 C 1.52993 * 117.50329 * 300.06557 * 12 11 10 15 15 C 1.38481 * 107.64469 * 0.02562 * 11 10 9 16 16 N 1.37629 * 126.52561 * 179.97438 * 15 11 10 17 17 O 1.34831 * 106.94553 * 0.23940 * 15 11 10 18 18 H 0.97004 * 120.00171 * 0.02562 * 1 2 3 19 19 H 1.09002 * 115.55000 * 154.39302 * 12 11 10 20 20 H 1.09001 * 117.50193 * 359.97438 * 13 12 11 21 21 H 1.08999 * 117.49914 * 145.01990 * 13 12 11 22 22 H 1.08993 * 117.50391 * 214.97924 * 14 12 11 23 23 H 1.09000 * 117.49866 * 359.97438 * 14 12 11 24 24 H 0.97001 * 120.00377 * 0.02562 * 16 15 11 25 25 H 0.97005 * 119.99898 * 179.72460 * 16 15 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3077 0.0000 0.0000 3 14 2.2416 1.6178 0.0000 4 1 2.4892 2.0464 -1.4001 5 1 1.4390 2.6527 0.7000 6 1 3.5392 1.4403 0.7001 7 6 2.0085 -1.2138 0.0005 8 1 3.0885 -1.2138 0.0001 9 6 1.3114 -2.4213 0.0005 10 7 1.8614 -3.6316 0.0005 11 6 0.8952 -4.5427 0.0011 12 6 1.0827 -6.0380 0.0018 13 6 2.5016 -6.5719 0.2079 14 6 1.8451 -6.6550 -1.1724 15 6 -0.3155 -3.8706 0.0009 16 7 -1.5685 -4.4401 0.0008 17 8 -0.0332 -2.5522 -0.0052 18 1 -0.4850 0.8401 -0.0004 19 1 0.2613 -6.6145 0.4273 20 1 3.2996 -5.8417 0.3426 21 1 2.6136 -7.5000 0.7685 22 1 1.5255 -7.6376 -1.5193 23 1 2.2107 -5.9795 -1.9457 24 1 -1.6625 -5.4055 0.0013 25 1 -2.3576 -3.8760 0.0047 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259466953.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:42 Heat of formation + Delta-G solvation = 6.714384 kcal Electronic energy + Delta-G solvation = -11826.861535 eV Core-core repulsion = 9613.167249 eV Total energy + Delta-G solvation = -2213.694287 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 194.080 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.89524 -37.99256 -35.85178 -34.90369 -34.21818 -30.23276 -26.84618 -23.95999 -23.17192 -22.41768 -20.99757 -19.27508 -17.86505 -17.38430 -16.73523 -16.66354 -16.22040 -15.57784 -14.87777 -13.87685 -13.24854 -13.00003 -12.85188 -12.51742 -12.32705 -12.13175 -11.94255 -11.86927 -11.20051 -11.08277 -10.71786 -10.52184 -8.74380 -8.41478 -6.29368 1.21933 1.40917 1.57999 1.62821 2.20046 2.20508 2.29314 3.13203 3.39925 3.85302 3.89735 4.11863 4.24487 4.43126 4.83452 4.97415 5.00370 5.14449 5.30817 5.43833 5.57579 5.82668 6.16596 6.56183 6.73850 6.79512 7.21427 7.97546 8.32065 Molecular weight = 194.08amu Principal moments of inertia in cm(-1) A = 0.055088 B = 0.010784 C = 0.009252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.151309 B = 2595.780173 C = 3025.580768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C 0.026 3.974 3 Si 1.012 2.988 4 H -0.258 1.258 5 H -0.263 1.263 6 H -0.253 1.253 7 C -0.467 4.467 8 H 0.108 0.892 9 C 0.296 3.704 10 N -0.606 5.606 11 C -0.066 4.066 12 C -0.069 4.069 13 C -0.163 4.163 14 C -0.162 4.162 15 C 0.106 3.894 16 N -0.821 5.821 17 O -0.217 6.217 18 H 0.292 0.708 19 H 0.129 0.871 20 H 0.070 0.930 21 H 0.122 0.878 22 H 0.127 0.873 23 H 0.063 0.937 24 H 0.424 0.576 25 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.582 -5.629 -0.264 5.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C -0.191 4.191 3 Si 0.830 3.170 4 H -0.182 1.182 5 H -0.187 1.187 6 H -0.177 1.177 7 C -0.504 4.504 8 H 0.126 0.874 9 C 0.107 3.893 10 N -0.341 5.341 11 C -0.193 4.193 12 C -0.088 4.088 13 C -0.200 4.200 14 C -0.200 4.200 15 C -0.049 4.049 16 N -0.377 5.377 17 O -0.108 6.108 18 H 0.103 0.897 19 H 0.146 0.854 20 H 0.088 0.912 21 H 0.140 0.860 22 H 0.145 0.855 23 H 0.082 0.918 24 H 0.258 0.742 25 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -1.035 -5.577 -0.267 5.679 hybrid contribution -1.022 0.818 -0.009 1.310 sum -2.058 -4.759 -0.276 5.192 Atomic orbital electron populations 1.69820 1.09212 1.31206 1.35420 1.27081 0.95886 1.05224 0.90866 0.84758 0.78593 0.73817 0.79791 1.18226 1.18713 1.17680 1.18537 0.94862 0.86875 1.50126 0.87421 1.22091 0.75244 0.94589 0.97398 1.70458 1.32342 0.97934 1.33318 1.20677 0.86957 0.95436 1.16246 1.20033 0.96873 0.87135 1.04729 1.22855 0.94999 1.02317 0.99869 1.22948 1.03919 1.01963 0.91128 1.20070 0.90002 0.82138 1.12659 1.40171 1.00418 1.08712 1.88414 1.84723 1.28150 1.23224 1.74733 0.89716 0.85353 0.91175 0.85997 0.85503 0.91795 0.74224 0.77252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -45.59 11.95 21.87 0.26 -45.33 15 2 C 0.03 1.37 5.50 85.32 0.47 1.84 15 3 Si 1.01 38.99 29.56 68.60 2.03 41.02 15 4 H -0.26 -9.46 7.11 99.48 0.71 -8.76 15 5 H -0.26 -9.45 7.11 99.48 0.71 -8.74 15 6 H -0.25 -9.43 7.11 99.48 0.71 -8.72 15 7 C -0.47 -27.29 9.43 23.02 0.22 -27.07 15 8 H 0.11 6.03 7.85 -2.91 -0.02 6.01 15 9 C 0.30 18.20 7.63 84.81 0.65 18.85 15 10 N -0.61 -35.33 10.94 -295.67 -3.23 -38.57 15 11 C -0.07 -3.34 6.71 42.47 0.28 -3.05 15 12 C -0.07 -2.59 6.05 -11.54 -0.07 -2.66 15 13 C -0.16 -5.56 10.15 30.62 0.31 -5.25 15 14 C -0.16 -5.31 10.24 30.62 0.31 -4.99 15 15 C 0.11 5.34 8.59 83.84 0.72 6.06 15 16 N -0.82 -29.99 9.03 -165.77 -1.50 -31.48 15 17 O -0.22 -12.98 9.03 -15.72 -0.14 -13.13 15 18 H 0.29 14.31 8.29 -92.70 -0.77 13.54 15 19 H 0.13 3.88 7.85 -2.39 -0.02 3.86 15 20 H 0.07 2.86 7.91 -2.39 -0.02 2.84 15 21 H 0.12 3.17 8.14 -2.39 -0.02 3.15 15 22 H 0.13 3.05 8.14 -2.39 -0.02 3.04 15 23 H 0.06 2.45 8.14 -2.39 -0.02 2.43 15 24 H 0.42 12.03 8.43 -92.71 -0.78 11.25 15 25 H 0.40 13.29 8.95 -92.70 -0.83 12.46 15 Total: -1.00 -71.35 229.82 -0.07 -71.42 By element: Atomic # 1 Polarization: 32.72 SS G_CDS: -0.38 Total: 32.34 kcal Atomic # 6 Polarization: -19.17 SS G_CDS: 2.89 Total: -16.28 kcal Atomic # 7 Polarization: -110.91 SS G_CDS: -4.47 Total: -115.38 kcal Atomic # 8 Polarization: -12.98 SS G_CDS: -0.14 Total: -13.13 kcal Atomic # 14 Polarization: 38.99 SS G_CDS: 2.03 Total: 41.02 kcal Total: -71.35 -0.07 -71.42 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259466953.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.132 kcal (2) G-P(sol) polarization free energy of solvation -71.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.418 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds