Wall clock time and date at job start Mon Mar 30 2020 02:33:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30552 * 1 3 3 Si 1.86801 * 119.99811 * 2 1 4 4 H 1.48506 * 109.46703 * 239.99524 * 3 2 1 5 5 H 1.48493 * 109.47504 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47017 * 120.00508 * 3 2 1 7 7 C 1.40334 * 120.00237 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00156 * 179.97438 * 7 2 1 9 9 C 1.41246 * 119.99708 * 0.27361 * 7 2 1 10 10 N 1.33972 * 120.75229 * 24.75219 * 9 7 2 11 11 C 1.31344 * 120.73067 * 180.02562 * 10 9 7 12 12 N 1.32173 * 122.40967 * 0.02562 * 11 10 9 13 13 C 1.32136 * 121.44573 * 359.97438 * 12 11 10 14 14 C 1.39875 * 119.04945 * 359.72753 * 13 12 11 15 15 C 1.47392 * 121.06437 * 180.27180 * 14 13 12 16 16 O 1.21510 * 119.99566 * 185.83500 * 15 14 13 17 17 O 1.34780 * 119.99881 * 5.83835 * 15 14 13 18 18 H 0.97002 * 119.99893 * 359.97438 * 1 2 3 19 19 H 1.08004 * 118.79179 * 180.02562 * 11 10 9 20 20 H 1.07995 * 120.47571 * 180.02562 * 13 12 11 21 21 H 0.96709 * 116.99994 * 179.97438 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3055 0.0000 0.0000 3 14 2.2395 1.6178 0.0000 4 1 3.0933 1.6963 -1.2125 5 1 1.2746 2.7465 -0.0006 6 1 3.0933 1.6964 1.2124 7 6 2.0072 -1.2153 0.0005 8 1 3.0872 -1.2153 0.0001 9 6 1.3010 -2.4385 -0.0048 10 7 0.0550 -2.5080 -0.4921 11 6 -0.6015 -3.6456 -0.4964 12 7 -0.0800 -4.7662 -0.0281 13 6 1.1419 -4.8011 0.4735 14 6 1.8981 -3.6247 0.5021 15 6 3.2679 -3.6142 1.0462 16 8 3.8684 -2.5639 1.1598 17 8 3.8544 -4.7695 1.4175 18 1 -0.4850 0.8401 0.0004 19 1 -1.6042 -3.6660 -0.8972 20 1 1.5527 -5.7256 0.8515 21 1 4.7538 -4.7124 1.7683 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259590195.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:38 Heat of formation + Delta-G solvation = -56.008441 kcal Electronic energy + Delta-G solvation = -11688.664574 eV Core-core repulsion = 9336.417327 eV Total energy + Delta-G solvation = -2352.247247 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 194.048 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.49804 -38.29939 -35.18521 -34.12519 -31.62443 -30.85336 -26.81059 -23.99955 -22.26078 -20.63634 -18.03842 -17.23861 -16.09474 -15.78992 -14.95786 -14.71205 -14.59294 -12.96404 -12.88148 -12.66182 -12.30827 -11.47303 -11.33117 -11.12748 -10.64081 -10.42176 -10.09256 -9.76951 -8.94468 -8.80950 -8.25789 -7.65382 -6.87149 -4.96044 1.91421 2.70127 2.97773 3.02172 3.15153 3.78183 3.78902 4.09239 4.54776 5.45244 5.58482 5.86660 6.21656 6.34309 6.79390 6.86092 6.95301 7.34148 7.59095 8.09173 8.24591 8.51943 8.74221 9.00731 9.81176 9.94969 Molecular weight = 194.05amu Principal moments of inertia in cm(-1) A = 0.035640 B = 0.016687 C = 0.011527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.436722 B = 1677.511592 C = 2428.577987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.711 5.711 2 C 0.064 3.936 3 Si 0.925 3.075 4 H -0.259 1.259 5 H -0.275 1.275 6 H -0.258 1.258 7 C -0.373 4.373 8 H 0.121 0.879 9 C 0.287 3.713 10 N -0.513 5.513 11 C 0.299 3.701 12 N -0.628 5.628 13 C 0.215 3.785 14 C -0.350 4.350 15 C 0.532 3.468 16 O -0.527 6.527 17 O -0.533 6.533 18 H 0.285 0.715 19 H 0.164 0.836 20 H 0.143 0.857 21 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.049 -1.460 0.898 3.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.331 5.331 2 C -0.164 4.164 3 Si 0.747 3.253 4 H -0.183 1.183 5 H -0.200 1.200 6 H -0.182 1.182 7 C -0.403 4.403 8 H 0.138 0.862 9 C 0.162 3.838 10 N -0.230 5.230 11 C 0.008 3.992 12 N -0.352 5.352 13 C 0.047 3.953 14 C -0.361 4.361 15 C 0.380 3.620 16 O -0.419 6.419 17 O -0.344 6.344 18 H 0.096 0.904 19 H 0.181 0.819 20 H 0.160 0.840 21 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 1.686 -0.949 0.384 1.973 hybrid contribution 1.643 0.683 0.626 1.886 sum 3.329 -0.266 1.010 3.489 Atomic orbital electron populations 1.69858 1.07938 1.29821 1.25513 1.26411 0.94996 1.02280 0.92718 0.86083 0.79971 0.78540 0.80670 1.18348 1.19961 1.18244 1.20544 0.96694 0.88448 1.34652 0.86182 1.18512 0.87566 0.90977 0.86742 1.69258 1.08493 1.25672 1.19615 1.24565 0.98699 0.84572 0.91372 1.68239 1.13947 1.31103 1.21867 1.22809 0.89035 0.95702 0.87800 1.20203 0.94810 0.99216 1.21898 1.20711 0.86766 0.80065 0.74473 1.90737 1.65311 1.31982 1.53822 1.84627 1.34387 1.37889 1.77524 0.90370 0.81895 0.83979 0.74919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -18.19 11.87 55.57 0.66 -17.53 14 2 C 0.06 1.60 5.48 -17.31 -0.09 1.51 14 3 Si 0.92 18.56 29.56 -169.99 -5.03 13.54 14 4 H -0.26 -5.12 7.11 56.52 0.40 -4.72 14 5 H -0.27 -5.22 7.11 56.52 0.40 -4.82 14 6 H -0.26 -5.23 7.11 56.52 0.40 -4.83 14 7 C -0.37 -10.08 8.20 -37.65 -0.31 -10.39 14 8 H 0.12 3.25 5.50 -52.49 -0.29 2.96 14 9 C 0.29 7.84 6.43 -84.29 -0.54 7.30 14 10 N -0.51 -13.76 8.51 -12.27 -0.10 -13.87 14 11 C 0.30 7.14 12.25 -92.21 -1.13 6.01 14 12 N -0.63 -14.69 10.40 -14.31 -0.15 -14.84 14 13 C 0.21 4.88 10.90 -16.81 -0.18 4.69 14 14 C -0.35 -8.71 5.96 -104.06 -0.62 -9.33 14 15 C 0.53 12.08 8.24 34.46 0.28 12.36 14 16 O -0.53 -13.08 14.40 -19.27 -0.28 -13.36 14 17 O -0.53 -9.38 12.80 -40.71 -0.52 -9.90 14 18 H 0.29 6.51 8.29 -40.82 -0.34 6.17 14 19 H 0.16 3.30 8.06 -52.48 -0.42 2.88 14 20 H 0.14 2.76 7.72 -52.49 -0.41 2.36 14 21 H 0.39 4.86 9.11 45.56 0.42 5.27 14 LS Contribution 205.01 15.07 3.09 3.09 Total: -1.00 -30.68 205.01 -4.76 -35.43 By element: Atomic # 1 Polarization: 5.11 SS G_CDS: 0.16 Total: 5.28 kcal Atomic # 6 Polarization: 14.75 SS G_CDS: -2.59 Total: 12.16 kcal Atomic # 7 Polarization: -46.64 SS G_CDS: 0.41 Total: -46.24 kcal Atomic # 8 Polarization: -22.46 SS G_CDS: -0.80 Total: -23.26 kcal Atomic # 14 Polarization: 18.56 SS G_CDS: -5.03 Total: 13.54 kcal Total LS contribution 3.09 Total: 3.09 kcal Total: -30.68 -4.76 -35.43 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259590195.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.574 kcal (2) G-P(sol) polarization free energy of solvation -30.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds