Wall clock time and date at job start Mon Mar 30 2020 02:37:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 119.99772 * 2 1 4 4 H 1.48495 * 109.47246 * 270.00025 * 3 2 1 5 5 H 1.48501 * 109.46833 * 30.00258 * 3 2 1 6 6 H 1.48505 * 109.47000 * 149.99870 * 3 2 1 7 7 C 1.37879 * 120.00250 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00025 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00128 * 0.02562 * 7 2 1 10 10 H 1.09000 * 110.86188 * 62.35307 * 9 7 2 11 11 C 1.54128 * 110.98193 * 186.19772 * 9 7 2 12 12 C 1.52798 * 105.04933 * 144.70016 * 11 9 7 13 13 C 1.40125 * 136.54091 * 162.46722 * 12 11 9 14 14 C 1.32629 * 115.63437 * 179.91801 * 13 12 11 15 15 S 1.75580 * 109.65193 * 0.02562 * 14 13 12 16 16 C 1.33821 * 109.75208 * 342.42897 * 12 11 9 17 17 C 1.52110 * 110.67747 * 0.09595 * 16 12 11 18 18 H 0.96999 * 120.00492 * 359.97438 * 1 2 3 19 19 H 1.09003 * 110.31727 * 25.81848 * 11 9 7 20 20 H 1.08994 * 110.33883 * 263.60133 * 11 9 7 21 21 H 1.08000 * 122.17949 * 359.65079 * 13 12 11 22 22 H 1.08001 * 125.17304 * 179.97438 * 14 13 12 23 23 H 1.08997 * 110.36360 * 136.23164 * 17 16 12 24 24 H 1.08998 * 110.36530 * 258.43855 * 17 16 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0017 10 1 0.6481 -2.5985 -0.9042 11 6 2.2142 -3.6925 0.1532 12 6 1.4487 -4.7137 0.9934 13 6 1.5497 -6.0836 1.2702 14 6 0.6301 -6.5724 2.0915 15 16 -0.4622 -5.2896 2.5855 16 6 0.4246 -4.1139 1.6117 17 6 0.3787 -2.6341 1.2627 18 1 -0.4851 0.8400 0.0004 19 1 3.1221 -3.3815 0.6701 20 1 2.4580 -4.1118 -0.8229 21 1 2.3233 -6.7019 0.8394 22 1 0.5629 -7.6029 2.4075 23 1 -0.6453 -2.3258 1.0518 24 1 0.7931 -2.0394 2.0768 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259601447.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:01 Heat of formation + Delta-G solvation = 12.109363 kcal Electronic energy + Delta-G solvation = -9830.830714 eV Core-core repulsion = 8027.830492 eV Total energy + Delta-G solvation = -1803.000223 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 194.046 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.11296 -36.07568 -33.83400 -29.66008 -28.59400 -26.12036 -23.27630 -21.56081 -19.22484 -18.27919 -17.90324 -16.47237 -15.97265 -15.43668 -14.62674 -13.83397 -13.63589 -13.38204 -13.26846 -12.76626 -12.52686 -12.40205 -12.33650 -11.87130 -11.58228 -11.21974 -10.99153 -10.57406 -9.36098 -9.10382 -8.15719 -6.26857 0.23202 0.69687 1.21941 1.43350 1.43736 1.54298 1.88128 2.42741 3.16430 3.83538 4.08884 4.41188 4.59021 4.66965 4.82721 5.04620 5.08931 5.17827 5.23339 5.48877 5.65571 5.71697 5.81088 5.87850 6.30179 6.82297 7.41603 8.93970 Molecular weight = 194.05amu Principal moments of inertia in cm(-1) A = 0.076379 B = 0.009890 C = 0.009115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 366.505509 B = 2830.361234 C = 3071.185552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.013 3.987 3 Si 0.960 3.040 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.266 1.266 7 C -0.533 4.533 8 H 0.062 0.938 9 C 0.047 3.953 10 H 0.007 0.993 11 C -0.045 4.045 12 C -0.143 4.143 13 C -0.124 4.124 14 C -0.208 4.208 15 S 0.092 5.908 16 C -0.223 4.223 17 C -0.010 4.010 18 H 0.262 0.738 19 H 0.069 0.931 20 H 0.067 0.933 21 H 0.161 0.839 22 H 0.203 0.797 23 H 0.039 0.961 24 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.684 -10.112 3.745 10.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.187 4.187 3 Si 0.785 3.215 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.190 1.190 7 C -0.571 4.571 8 H 0.081 0.919 9 C 0.027 3.973 10 H 0.025 0.975 11 C -0.085 4.085 12 C -0.154 4.154 13 C -0.154 4.154 14 C -0.342 4.342 15 S 0.356 5.644 16 C -0.339 4.339 17 C -0.050 4.050 18 H 0.071 0.929 19 H 0.088 0.912 20 H 0.086 0.914 21 H 0.179 0.821 22 H 0.220 0.780 23 H 0.058 0.942 24 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 0.244 -9.978 4.719 11.041 hybrid contribution 1.240 1.099 -0.945 1.907 sum 1.483 -8.879 3.775 9.761 Atomic orbital electron populations 1.70096 1.07406 1.27528 1.50818 1.25828 0.95695 1.02704 0.94441 0.85529 0.78706 0.78933 0.78356 1.19913 1.21024 1.19016 1.21445 0.93238 0.91162 1.51214 0.91937 1.19312 0.92713 0.92936 0.92316 0.97492 1.21089 0.97702 0.92243 0.97425 1.21085 0.98207 0.94585 1.01545 1.19904 1.01752 0.93044 1.00707 1.25642 0.99724 1.03564 1.05260 1.83646 1.32837 0.99259 1.48662 1.26410 1.01508 1.01911 1.04076 1.20661 0.99820 0.85909 0.98628 0.92877 0.91241 0.91440 0.82144 0.78046 0.94188 0.93496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.78 12.34 21.45 0.26 -53.51 14 2 C 0.01 0.70 5.34 84.66 0.45 1.15 14 3 Si 0.96 43.43 29.54 68.60 2.03 45.46 14 4 H -0.27 -12.03 7.11 99.48 0.71 -11.32 14 5 H -0.28 -12.70 7.11 99.48 0.71 -12.00 14 6 H -0.27 -11.60 7.11 99.48 0.71 -10.89 14 7 C -0.53 -29.46 8.43 25.60 0.22 -29.25 14 8 H 0.06 3.34 7.67 -2.91 -0.02 3.31 14 9 C 0.05 2.45 3.02 -10.75 -0.03 2.42 14 10 H 0.01 0.39 8.14 -2.39 -0.02 0.37 14 11 C -0.05 -1.95 6.35 30.91 0.20 -1.75 14 12 C -0.14 -5.63 6.54 -19.73 -0.13 -5.76 14 13 C -0.12 -3.79 10.17 21.57 0.22 -3.57 14 14 C -0.21 -5.58 11.18 66.66 0.75 -4.83 14 15 S 0.09 3.00 23.35 -56.49 -1.32 1.68 14 16 C -0.22 -9.46 7.35 25.13 0.18 -9.27 14 17 C -0.01 -0.51 5.42 30.71 0.17 -0.34 14 18 H 0.26 14.55 8.31 -92.71 -0.77 13.78 14 19 H 0.07 2.94 7.81 -2.39 -0.02 2.92 14 20 H 0.07 2.64 8.14 -2.39 -0.02 2.62 14 21 H 0.16 3.86 8.06 -2.91 -0.02 3.84 14 22 H 0.20 3.62 8.06 -2.91 -0.02 3.60 14 23 H 0.04 2.16 7.90 -2.39 -0.02 2.14 14 24 H 0.05 2.50 7.90 -2.39 -0.02 2.48 14 Total: -1.00 -60.89 222.32 4.18 -56.71 By element: Atomic # 1 Polarization: -0.33 SS G_CDS: 1.19 Total: 0.86 kcal Atomic # 6 Polarization: -53.22 SS G_CDS: 2.02 Total: -51.20 kcal Atomic # 7 Polarization: -53.78 SS G_CDS: 0.26 Total: -53.51 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Atomic # 16 Polarization: 3.00 SS G_CDS: -1.32 Total: 1.68 kcal Total: -60.89 4.18 -56.71 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259601447.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.820 kcal (2) G-P(sol) polarization free energy of solvation -60.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.711 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds