Wall clock time and date at job start Mon Mar 30 2020 02:15:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35970 * 125.47462 * 2 1 4 4 C 1.39303 * 108.08865 * 180.10368 * 3 2 1 5 5 C 1.50697 * 126.47307 * 179.88589 * 4 3 2 6 6 C 1.52997 * 109.47466 * 299.68911 * 5 4 3 7 7 C 1.52999 * 109.46961 * 59.69261 * 5 4 3 8 8 C 1.39745 * 107.05377 * 359.62701 * 4 3 2 9 9 C 1.39946 * 126.35830 * 180.26429 * 8 4 3 10 10 H 1.08008 * 119.99717 * 359.97438 * 9 8 4 11 11 C 1.40064 * 120.00282 * 179.97438 * 9 8 4 12 12 N 1.30862 * 119.99922 * 359.97438 * 11 9 8 13 13 Si 1.86804 * 120.00037 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.46968 * 59.99904 * 13 11 9 15 15 H 1.48496 * 109.47005 * 180.02562 * 13 11 9 16 16 H 1.48497 * 109.47156 * 300.00223 * 13 11 9 17 17 N 1.36159 * 125.47081 * 179.67539 * 2 1 3 18 18 H 0.96997 * 125.74574 * 0.04537 * 17 2 1 19 19 H 1.09003 * 109.47478 * 270.29794 * 1 2 3 20 20 H 1.09003 * 109.46625 * 30.29330 * 1 2 3 21 21 H 1.08998 * 109.47296 * 150.29408 * 1 2 3 22 22 H 1.07998 * 125.95612 * 359.97438 * 3 2 1 23 23 H 1.09002 * 109.47120 * 179.68663 * 5 4 3 24 24 H 1.09002 * 109.47153 * 59.99773 * 6 5 4 25 25 H 1.09001 * 109.46832 * 299.99964 * 6 5 4 26 26 H 1.09004 * 109.47261 * 179.97438 * 6 5 4 27 27 H 1.09000 * 109.47486 * 59.99568 * 7 5 4 28 28 H 1.09001 * 109.47362 * 180.02562 * 7 5 4 29 29 H 1.09002 * 109.46716 * 299.99650 * 7 5 4 30 30 H 0.96995 * 119.99867 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2961 1.1073 0.0000 4 6 3.6255 0.6911 -0.0024 5 6 4.8425 1.5798 -0.0057 6 6 4.8304 2.4565 -1.2595 7 6 4.8275 2.4695 1.2390 8 6 3.6174 -0.7064 0.0048 9 6 4.7396 -1.5425 0.0105 10 1 5.7315 -1.1150 0.0091 11 6 4.5765 -2.9336 0.0181 12 7 3.3747 -3.4514 0.0204 13 14 6.0745 -4.0496 0.0249 14 1 6.8891 -3.7773 1.2364 15 1 5.6350 -5.4680 0.0319 16 1 6.8903 -3.7906 -1.1885 17 7 2.2971 -1.1089 0.0063 18 1 1.9848 -2.0272 0.0109 19 1 -0.3634 0.0053 1.0277 20 1 -0.3633 0.8874 -0.5184 21 1 -0.3634 -0.8926 -0.5092 22 1 1.9522 2.1311 -0.0004 23 1 5.7420 0.9642 -0.0014 24 1 3.9309 3.0722 -1.2638 25 1 4.8411 1.8226 -2.1461 26 1 5.7105 3.0997 -1.2616 27 1 4.8361 1.8449 2.1322 28 1 5.7075 3.1127 1.2364 29 1 3.9280 3.0851 1.2347 30 1 3.2618 -4.4148 0.0260 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259624133.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:08 Heat of formation + Delta-G solvation = -12.970543 kcal Electronic energy + Delta-G solvation = -12099.793710 eV Core-core repulsion = 10086.504827 eV Total energy + Delta-G solvation = -2013.288884 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 193.116 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.01680 -35.99188 -35.37940 -31.82211 -30.09575 -28.98360 -27.72821 -25.05357 -22.38398 -20.61178 -19.90479 -18.64862 -16.89339 -16.05923 -15.30253 -14.89567 -14.61875 -14.24866 -13.94849 -13.76461 -13.46524 -13.16390 -12.85769 -12.68081 -12.63260 -12.58272 -12.18480 -11.91753 -11.77447 -11.34537 -11.13730 -11.06701 -8.88541 -8.69301 -8.64588 -6.06352 1.32072 1.38576 1.50342 2.04369 2.23026 2.47328 3.41714 3.45717 4.35962 4.49453 4.67257 4.69406 4.70364 4.93020 4.98565 5.00549 5.11903 5.15924 5.18822 5.23644 5.35504 5.55936 5.59208 5.71769 5.83248 6.07281 6.29397 6.40372 6.88301 7.17185 7.33445 7.84692 8.40123 Molecular weight = 193.12amu Principal moments of inertia in cm(-1) A = 0.029789 B = 0.014561 C = 0.010480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.707667 B = 1922.505689 C = 2671.156551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C -0.113 4.113 3 C -0.179 4.179 4 C -0.307 4.307 5 C -0.006 4.006 6 C -0.124 4.124 7 C -0.124 4.124 8 C 0.183 3.817 9 C -0.475 4.475 10 H 0.086 0.914 11 C 0.020 3.980 12 N -0.882 5.882 13 Si 0.996 3.004 14 H -0.262 1.262 15 H -0.271 1.271 16 H -0.262 1.262 17 N -0.561 5.561 18 H 0.412 0.588 19 H 0.058 0.942 20 H 0.079 0.921 21 H 0.049 0.951 22 H 0.117 0.883 23 H 0.043 0.957 24 H 0.049 0.951 25 H 0.032 0.968 26 H 0.064 0.936 27 H 0.031 0.969 28 H 0.064 0.936 29 H 0.049 0.951 30 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.537 3.857 -0.048 3.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.223 4.223 3 C -0.204 4.204 4 C -0.311 4.311 5 C -0.025 4.025 6 C -0.181 4.181 7 C -0.181 4.181 8 C 0.068 3.932 9 C -0.511 4.511 10 H 0.104 0.896 11 C -0.187 4.187 12 N -0.516 5.516 13 Si 0.818 3.182 14 H -0.187 1.187 15 H -0.196 1.196 16 H -0.187 1.187 17 N -0.167 5.167 18 H 0.258 0.742 19 H 0.076 0.924 20 H 0.098 0.902 21 H 0.068 0.932 22 H 0.135 0.865 23 H 0.061 0.939 24 H 0.068 0.932 25 H 0.051 0.949 26 H 0.083 0.917 27 H 0.051 0.949 28 H 0.083 0.917 29 H 0.068 0.932 30 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 0.303 3.525 -0.047 3.539 hybrid contribution 0.206 -1.132 0.018 1.151 sum 0.509 2.394 -0.030 2.447 Atomic orbital electron populations 1.20008 0.87999 1.02015 1.01282 1.20668 0.93969 0.87328 1.20308 1.20043 0.92863 0.95776 1.11746 1.19636 0.94365 0.91463 1.25674 1.19116 0.94118 0.94243 0.94993 1.21678 1.01041 0.98539 0.96839 1.21679 1.01046 0.98494 0.96889 1.18355 0.83730 0.92576 0.98575 1.18981 0.93414 0.91045 1.47632 0.89602 1.26739 1.00427 0.99849 0.91721 1.68882 1.24590 1.14686 1.43456 0.85003 0.77269 0.76183 0.79766 1.18678 1.19562 1.18684 1.42869 1.05643 1.08442 1.59776 0.74239 0.92357 0.90191 0.93189 0.86536 0.93855 0.93195 0.94915 0.91749 0.94928 0.91743 0.93199 0.89951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.03 10.41 71.24 0.74 -1.29 16 2 C -0.11 -5.44 7.15 41.36 0.30 -5.15 16 3 C -0.18 -8.54 10.17 22.00 0.22 -8.31 16 4 C -0.31 -15.51 4.94 -19.24 -0.10 -15.60 16 5 C -0.01 -0.24 3.25 -11.54 -0.04 -0.28 16 6 C -0.12 -4.48 9.09 71.98 0.65 -3.82 16 7 C -0.12 -4.49 9.08 71.98 0.65 -3.83 16 8 C 0.18 10.28 6.71 38.95 0.26 10.54 16 9 C -0.48 -26.37 9.08 23.13 0.21 -26.16 16 10 H 0.09 4.60 6.83 -2.91 -0.02 4.58 16 11 C 0.02 1.04 5.50 85.28 0.47 1.51 16 12 N -0.88 -46.14 10.69 21.86 0.23 -45.90 16 13 Si 1.00 39.67 29.56 68.60 2.03 41.69 16 14 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 15 H -0.27 -10.23 7.11 99.48 0.71 -9.53 16 16 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 17 N -0.56 -30.19 5.77 -175.02 -1.01 -31.20 16 18 H 0.41 22.26 6.28 -92.71 -0.58 21.68 16 19 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 20 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 21 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 22 H 0.12 4.95 8.06 -2.91 -0.02 4.92 16 23 H 0.04 1.94 6.89 -2.39 -0.02 1.92 16 24 H 0.05 1.73 8.05 -2.39 -0.02 1.71 16 25 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.06 1.92 8.14 -2.38 -0.02 1.90 16 27 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.05 1.73 8.03 -2.39 -0.02 1.71 16 30 H 0.29 13.82 8.30 -92.71 -0.77 13.05 16 Total: -1.00 -59.44 252.16 5.16 -54.28 By element: Atomic # 1 Polarization: 32.99 SS G_CDS: 0.54 Total: 33.52 kcal Atomic # 6 Polarization: -55.77 SS G_CDS: 3.38 Total: -52.39 kcal Atomic # 7 Polarization: -76.33 SS G_CDS: -0.78 Total: -77.11 kcal Atomic # 14 Polarization: 39.67 SS G_CDS: 2.03 Total: 41.69 kcal Total: -59.44 5.16 -54.28 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259624133.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.306 kcal (2) G-P(sol) polarization free energy of solvation -59.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds