Wall clock time and date at job start Mon Mar 30 2020 02:07:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.37858 * 127.04622 * 2 1 4 4 C 1.40127 * 126.65494 * 359.97438 * 3 2 1 5 5 H 1.08002 * 120.00410 * 0.02562 * 4 3 2 6 6 C 1.40247 * 119.99802 * 179.72219 * 4 3 2 7 7 N 1.30684 * 120.00113 * 0.27923 * 6 4 3 8 8 Si 1.86803 * 119.99956 * 180.27752 * 6 4 3 9 9 H 1.48496 * 109.47141 * 59.99852 * 8 6 4 10 10 H 1.48497 * 109.46778 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.46993 * 300.00129 * 8 6 4 12 12 N 1.33024 * 106.69018 * 180.24231 * 3 2 1 13 13 N 1.28573 * 109.35094 * 359.56275 * 12 3 2 14 14 C 1.31308 * 110.20556 * 0.44852 * 13 12 3 15 15 C 1.50700 * 126.07967 * 179.70261 * 14 13 12 16 16 C 1.53006 * 117.49585 * 8.77564 * 15 14 13 17 17 C 1.53005 * 117.49927 * 300.11836 * 15 14 13 18 18 H 1.08999 * 109.46900 * 90.02000 * 1 2 3 19 19 H 1.08995 * 109.47255 * 210.02871 * 1 2 3 20 20 H 1.09007 * 109.47103 * 330.02316 * 1 2 3 21 21 H 0.96996 * 120.00337 * 179.97438 * 7 6 4 22 22 H 1.08995 * 115.55730 * 154.44640 * 15 14 13 23 23 H 1.08997 * 117.49737 * 0.02562 * 16 15 14 24 24 H 1.09002 * 117.49913 * 145.02617 * 16 15 14 25 25 H 1.08999 * 117.49903 * 214.98233 * 17 15 14 26 26 H 1.09003 * 117.49270 * 359.96932 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2956 1.1003 0.0000 4 6 1.9023 2.4453 -0.0005 5 1 0.8530 2.7012 -0.0005 6 6 2.8713 3.4592 0.0055 7 7 4.1409 3.1496 0.0060 8 14 2.3471 5.2521 0.0126 9 1 1.5344 5.5254 1.2251 10 1 3.5520 6.1200 0.0177 11 1 1.5380 5.5361 -1.1999 12 7 3.5427 0.6376 -0.0054 13 7 3.5202 -0.6479 0.0007 14 6 2.2802 -1.0798 0.0005 15 6 1.8427 -2.5219 0.0002 16 6 2.9211 -3.5873 0.2072 17 6 2.2894 -3.3955 -1.1738 18 1 -0.3633 -0.0004 -1.0277 19 1 -0.3633 -0.8897 0.5142 20 1 -0.3634 0.8902 0.5135 21 1 4.8111 3.8508 0.0097 22 1 0.8572 -2.7144 0.4243 23 1 3.9469 -3.2451 0.3440 24 1 2.6450 -4.4809 0.7671 25 1 1.5978 -4.1627 -1.5219 26 1 2.8993 -2.9269 -1.9462 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259764449.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:20 Heat of formation + Delta-G solvation = 68.859279 kcal Electronic energy + Delta-G solvation = -11766.627449 eV Core-core repulsion = 9653.346629 eV Total energy + Delta-G solvation = -2113.280820 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.091 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.69208 -37.83467 -35.50142 -35.09330 -31.07931 -28.15830 -27.30765 -24.33261 -23.20326 -22.37256 -20.52932 -18.80957 -17.57326 -16.94843 -16.42780 -15.81496 -15.39573 -14.82159 -13.89882 -13.86443 -13.39631 -12.91372 -12.77576 -12.63119 -12.33668 -12.00678 -11.76573 -11.57476 -11.31647 -11.14030 -10.37885 -10.25130 -9.45053 -8.48786 -6.56572 1.30238 1.41369 1.57104 1.69809 2.17251 2.42025 2.49916 3.15599 3.40654 3.80196 3.97239 4.14641 4.22957 4.29351 4.54725 4.69308 4.81389 4.93391 5.05959 5.06693 5.34998 5.39713 5.41871 5.79391 6.27251 6.37548 6.82808 7.07989 8.48118 8.84170 Molecular weight = 193.09amu Principal moments of inertia in cm(-1) A = 0.071960 B = 0.010332 C = 0.009290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 389.013778 B = 2709.376082 C = 3013.296767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.530 5.530 3 C 0.302 3.698 4 C -0.481 4.481 5 H 0.101 0.899 6 C 0.027 3.973 7 N -0.796 5.796 8 Si 1.007 2.993 9 H -0.253 1.253 10 H -0.273 1.273 11 H -0.254 1.254 12 N -0.401 5.401 13 N -0.356 5.356 14 C 0.116 3.884 15 C -0.077 4.077 16 C -0.152 4.152 17 C -0.153 4.153 18 H 0.071 0.929 19 H 0.100 0.900 20 H 0.080 0.920 21 H 0.282 0.718 22 H 0.140 0.860 23 H 0.073 0.927 24 H 0.133 0.867 25 H 0.136 0.864 26 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.739 -5.617 -0.218 11.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.229 5.229 3 C 0.055 3.945 4 C -0.521 4.521 5 H 0.119 0.881 6 C -0.192 4.192 7 N -0.421 5.421 8 Si 0.825 3.175 9 H -0.177 1.177 10 H -0.198 1.198 11 H -0.178 1.178 12 N -0.245 5.245 13 N -0.196 5.196 14 C -0.151 4.151 15 C -0.097 4.097 16 C -0.190 4.190 17 C -0.191 4.191 18 H 0.090 0.910 19 H 0.119 0.881 20 H 0.099 0.901 21 H 0.092 0.908 22 H 0.158 0.842 23 H 0.092 0.908 24 H 0.151 0.849 25 H 0.154 0.846 26 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -7.976 -5.615 -0.216 9.757 hybrid contribution -1.085 0.958 -0.011 1.447 sum -9.061 -4.658 -0.227 10.191 Atomic orbital electron populations 1.21860 0.75467 1.04554 1.03177 1.46132 1.08546 1.05531 1.62693 1.22027 0.85642 0.90176 0.96638 1.18636 0.95690 0.86595 1.51197 0.88142 1.27003 0.93896 1.06478 0.91868 1.70119 1.02455 1.36874 1.32677 0.84917 0.78593 0.73642 0.80318 1.17720 1.19767 1.17779 1.75455 1.17647 0.99488 1.31885 1.73839 1.19214 1.06964 1.19601 1.23801 0.87858 0.91307 1.12152 1.20077 1.00555 0.82388 1.06723 1.22971 0.97179 0.99077 0.99728 1.23041 1.03507 1.01509 0.91043 0.91047 0.88114 0.90119 0.90769 0.84227 0.90826 0.84896 0.84641 0.91545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.08 10.84 127.77 1.38 4.46 15 2 N -0.53 -25.74 3.21 -534.25 -1.71 -27.45 15 3 C 0.30 17.85 7.53 133.51 1.01 18.86 15 4 C -0.48 -26.65 9.06 23.22 0.21 -26.44 15 5 H 0.10 4.91 7.30 -2.91 -0.02 4.88 15 6 C 0.03 1.46 5.50 85.35 0.47 1.93 15 7 N -0.80 -47.08 11.95 21.88 0.26 -46.81 15 8 Si 1.01 39.02 29.56 68.60 2.03 41.05 15 9 H -0.25 -9.20 7.11 99.48 0.71 -8.50 15 10 H -0.27 -10.27 7.11 99.48 0.71 -9.56 15 11 H -0.25 -9.25 7.11 99.48 0.71 -8.54 15 12 N -0.40 -26.17 10.53 -55.14 -0.58 -26.75 15 13 N -0.36 -21.09 11.81 -49.88 -0.59 -21.68 15 14 C 0.12 5.63 7.55 137.81 1.04 6.68 15 15 C -0.08 -2.61 5.95 -11.54 -0.07 -2.68 15 16 C -0.15 -4.54 10.15 30.62 0.31 -4.23 15 17 C -0.15 -4.39 10.24 30.62 0.31 -4.08 15 18 H 0.07 2.14 8.14 -2.39 -0.02 2.12 15 19 H 0.10 2.58 7.35 -2.39 -0.02 2.56 15 20 H 0.08 2.60 7.51 -2.38 -0.02 2.58 15 21 H 0.28 15.11 8.29 -92.71 -0.77 14.34 15 22 H 0.14 3.67 7.46 -2.39 -0.02 3.65 15 23 H 0.07 2.70 7.90 -2.39 -0.02 2.68 15 24 H 0.13 2.84 8.14 -2.39 -0.02 2.82 15 25 H 0.14 2.70 8.14 -2.39 -0.02 2.68 15 26 H 0.07 2.30 8.14 -2.39 -0.02 2.28 15 Total: -1.00 -78.39 233.58 5.25 -73.13 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: 1.18 Total: 14.02 kcal Atomic # 6 Polarization: -10.17 SS G_CDS: 4.67 Total: -5.51 kcal Atomic # 7 Polarization: -120.07 SS G_CDS: -2.62 Total: -122.69 kcal Atomic # 14 Polarization: 39.02 SS G_CDS: 2.03 Total: 41.05 kcal Total: -78.39 5.25 -73.13 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259764449.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.992 kcal (2) G-P(sol) polarization free energy of solvation -78.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds