Wall clock time and date at job start Mon Mar 30 2020 02:35:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86796 * 119.99705 * 2 1 4 4 H 1.48507 * 109.47175 * 240.00105 * 3 2 1 5 5 H 1.48494 * 109.47386 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47191 * 120.00595 * 3 2 1 7 7 C 1.37870 * 119.99949 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99992 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00148 * 359.97438 * 7 2 1 10 10 H 1.08996 * 110.35525 * 60.70365 * 9 7 2 11 11 C 1.54203 * 110.31716 * 182.94973 * 9 7 2 12 12 C 1.54033 * 102.46893 * 146.81374 * 11 9 7 13 13 C 1.52689 * 105.12248 * 332.17150 * 12 11 9 14 14 C 1.34839 * 136.31390 * 197.91010 * 13 12 11 15 15 S 1.75388 * 110.17123 * 180.02562 * 14 13 12 16 16 C 1.75380 * 91.00428 * 0.02562 * 15 14 13 17 17 C 1.34844 * 110.17241 * 0.02562 * 16 15 14 18 18 H 0.97001 * 120.00077 * 359.97438 * 1 2 3 19 19 H 1.08997 * 111.00030 * 28.49973 * 11 9 7 20 20 H 1.09005 * 110.66495 * 264.97427 * 11 9 7 21 21 H 1.09002 * 110.31242 * 213.25762 * 12 11 9 22 22 H 1.08999 * 110.39259 * 91.12845 * 12 11 9 23 23 H 1.08001 * 124.91680 * 359.97438 * 14 13 12 24 24 H 1.07998 * 124.91475 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 1 0.6280 -2.5773 -0.8915 11 6 2.2340 -3.6849 0.0732 12 6 1.4415 -4.7237 0.8890 13 6 0.5014 -3.9048 1.7706 14 6 -0.2240 -4.1208 2.8865 15 16 -1.0901 -2.6635 3.3363 16 6 -0.4190 -1.8037 1.9629 17 6 0.3921 -2.6169 1.2564 18 1 -0.4850 0.8400 0.0004 19 1 3.1494 -3.4017 0.5927 20 1 2.4554 -4.0637 -0.9246 21 1 2.1174 -5.3166 1.5052 22 1 0.8692 -5.3716 0.2251 23 1 -0.2663 -5.0560 3.4249 24 1 -0.6261 -0.7725 1.7179 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259785564.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:32 Heat of formation + Delta-G solvation = 12.941253 kcal Electronic energy + Delta-G solvation = -10106.931919 eV Core-core repulsion = 8303.967770 eV Total energy + Delta-G solvation = -1802.964149 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 194.046 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.07535 -35.01127 -33.68058 -30.61494 -28.16129 -25.02445 -24.55180 -20.96437 -19.08264 -17.95307 -17.71174 -16.54745 -16.24658 -15.36167 -14.03050 -13.86649 -13.49810 -13.35495 -12.94839 -12.78848 -12.64976 -12.40772 -12.28178 -11.94164 -11.36988 -11.03758 -11.00557 -10.47520 -9.15413 -8.78552 -8.11135 -6.22119 0.45359 1.14549 1.31496 1.41527 1.42530 1.49608 2.18542 2.43623 3.14615 4.05463 4.26455 4.47574 4.51524 4.81459 4.99038 5.07708 5.18769 5.24445 5.46259 5.59428 5.74244 5.84320 5.90643 6.22325 6.33123 6.85602 7.42340 8.93113 Molecular weight = 194.05amu Principal moments of inertia in cm(-1) A = 0.040501 B = 0.015454 C = 0.011970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.166938 B = 1811.413517 C = 2338.623036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.015 3.985 3 Si 0.953 3.047 4 H -0.269 1.269 5 H -0.284 1.284 6 H -0.275 1.275 7 C -0.524 4.524 8 H 0.058 0.942 9 C 0.081 3.919 10 H 0.010 0.990 11 C -0.108 4.108 12 C -0.046 4.046 13 C -0.138 4.138 14 C -0.227 4.227 15 S 0.049 5.951 16 C -0.211 4.211 17 C -0.097 4.097 18 H 0.261 0.739 19 H 0.060 0.940 20 H 0.077 0.923 21 H 0.089 0.911 22 H 0.086 0.914 23 H 0.183 0.817 24 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.679 -6.486 3.901 7.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.183 4.183 3 Si 0.778 3.222 4 H -0.194 1.194 5 H -0.210 1.210 6 H -0.201 1.201 7 C -0.562 4.562 8 H 0.076 0.924 9 C 0.061 3.939 10 H 0.028 0.972 11 C -0.146 4.146 12 C -0.086 4.086 13 C -0.152 4.152 14 C -0.362 4.362 15 S 0.313 5.687 16 C -0.345 4.345 17 C -0.108 4.108 18 H 0.070 0.930 19 H 0.079 0.921 20 H 0.095 0.905 21 H 0.107 0.893 22 H 0.104 0.896 23 H 0.200 0.800 24 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -0.493 -5.959 5.105 7.862 hybrid contribution 1.035 0.945 -1.185 1.836 sum 0.542 -5.013 3.920 6.387 Atomic orbital electron populations 1.69975 1.07024 1.26961 1.50483 1.25704 0.95689 1.02203 0.94740 0.85694 0.78493 0.79220 0.78752 1.19422 1.20983 1.20084 1.21551 0.93091 0.91666 1.49875 0.92384 1.18396 0.91728 0.94061 0.89760 0.97205 1.22247 0.97780 0.94760 0.99784 1.20957 0.95464 0.96208 0.95931 1.21082 1.00672 0.96890 0.96545 1.25113 1.06092 1.02444 1.02535 1.83337 1.50277 1.04431 1.30691 1.26376 1.05009 1.04728 0.98356 1.21097 0.97592 0.92557 0.99561 0.93009 0.92143 0.90464 0.89285 0.89589 0.80017 0.81831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -51.40 9.65 21.44 0.21 -51.19 14 2 C 0.01 0.81 5.15 84.65 0.44 1.25 14 3 Si 0.95 43.43 29.54 68.60 2.03 45.45 14 4 H -0.27 -11.87 7.11 99.48 0.71 -11.16 14 5 H -0.28 -12.74 7.11 99.48 0.71 -12.03 14 6 H -0.28 -12.40 7.11 99.48 0.71 -11.69 14 7 C -0.52 -28.82 8.54 25.60 0.22 -28.60 14 8 H 0.06 3.10 7.65 -2.91 -0.02 3.08 14 9 C 0.08 4.14 2.82 -11.24 -0.03 4.11 14 10 H 0.01 0.56 8.14 -2.39 -0.02 0.54 14 11 C -0.11 -4.29 6.51 31.35 0.20 -4.09 14 12 C -0.05 -1.58 6.79 30.84 0.21 -1.37 14 13 C -0.14 -5.69 6.44 -19.79 -0.13 -5.82 14 14 C -0.23 -8.29 11.22 67.04 0.75 -7.54 14 15 S 0.05 1.89 23.30 -56.49 -1.32 0.57 14 16 C -0.21 -10.47 10.15 67.04 0.68 -9.79 14 17 C -0.10 -4.81 5.54 -19.79 -0.11 -4.92 14 18 H 0.26 14.16 8.31 -92.71 -0.77 13.39 14 19 H 0.06 2.40 7.84 -2.39 -0.02 2.38 14 20 H 0.08 2.71 8.14 -2.38 -0.02 2.69 14 21 H 0.09 2.52 8.14 -2.39 -0.02 2.50 14 22 H 0.09 2.62 8.14 -2.39 -0.02 2.60 14 23 H 0.18 5.13 8.06 -2.91 -0.02 5.11 14 24 H 0.16 8.96 5.46 -2.91 -0.02 8.95 14 Total: -1.00 -59.93 216.84 4.34 -55.59 By element: Atomic # 1 Polarization: 5.16 SS G_CDS: 1.19 Total: 6.35 kcal Atomic # 6 Polarization: -59.00 SS G_CDS: 2.23 Total: -56.77 kcal Atomic # 7 Polarization: -51.40 SS G_CDS: 0.21 Total: -51.19 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.45 kcal Atomic # 16 Polarization: 1.89 SS G_CDS: -1.32 Total: 0.57 kcal Total: -59.93 4.34 -55.59 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259785564.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.529 kcal (2) G-P(sol) polarization free energy of solvation -59.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.588 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds