Wall clock time and date at job start Mon Mar 30 2020 02:48:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.36494 * 119.98410 * 2 1 4 4 C 1.39112 * 120.35894 * 180.02562 * 3 2 1 5 5 O 1.35739 * 119.84216 * 179.97438 * 4 3 2 6 6 C 1.39859 * 120.32096 * 359.97438 * 4 3 2 7 7 O 1.35968 * 120.02201 * 179.97438 * 6 4 3 8 8 C 1.37784 * 119.96034 * 0.02562 * 6 4 3 9 9 C 1.40813 * 119.98595 * 180.02562 * 2 1 3 10 10 C 1.41203 * 120.15512 * 359.95941 * 9 2 1 11 11 H 1.08000 * 120.00356 * 25.57168 * 10 9 2 12 12 C 1.39873 * 119.99650 * 205.57179 * 10 9 2 13 13 N 1.30886 * 120.00393 * 15.40003 * 12 10 9 14 14 Si 1.86801 * 119.99530 * 195.40224 * 12 10 9 15 15 H 1.48503 * 109.47262 * 90.00381 * 14 12 10 16 16 H 1.48509 * 109.46663 * 209.99959 * 14 12 10 17 17 H 1.48494 * 109.47504 * 329.99856 * 14 12 10 18 18 H 1.09005 * 109.46850 * 89.99549 * 1 2 3 19 19 H 1.08995 * 109.47275 * 209.99868 * 1 2 3 20 20 H 1.09000 * 109.46825 * 330.00250 * 1 2 3 21 21 H 1.07995 * 119.82287 * 359.74103 * 3 2 1 22 22 H 0.96700 * 114.00344 * 89.99641 * 5 4 3 23 23 H 0.96698 * 114.00738 * 270.02844 * 7 6 4 24 24 H 1.08004 * 120.17531 * 180.02562 * 8 6 4 25 25 H 0.97003 * 119.99997 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1892 1.1823 0.0000 4 6 3.5803 1.1914 -0.0005 5 8 4.2480 2.3732 -0.0011 6 6 4.2942 -0.0113 -0.0005 7 8 5.6538 0.0047 -0.0016 8 6 3.6190 -1.2123 -0.0005 9 6 2.2108 -1.2197 -0.0005 10 6 1.5078 -2.4442 -0.0002 11 1 0.5070 -2.4925 -0.4033 12 6 2.1076 -3.5948 0.5222 13 7 3.1745 -3.4931 1.2735 14 14 1.3860 -5.2765 0.1474 15 1 2.0051 -5.8164 -1.0897 16 1 1.6604 -6.1965 1.2804 17 1 -0.0812 -5.1537 -0.0463 18 1 -0.3633 0.0001 -1.0277 19 1 -0.3633 -0.8899 0.5138 20 1 -0.3633 0.8900 0.5138 21 1 1.6460 2.1157 -0.0042 22 1 4.4418 2.7159 0.8822 23 1 6.0465 0.0094 -0.8852 24 1 4.1668 -2.1431 -0.0001 25 1 3.5902 -4.2910 1.6361 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259800890.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:24 Heat of formation + Delta-G solvation = -81.738022 kcal Electronic energy + Delta-G solvation = -11893.884142 eV Core-core repulsion = 9644.061520 eV Total energy + Delta-G solvation = -2249.822622 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 194.073 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.68488 -36.00574 -35.76033 -33.40133 -30.26324 -29.12690 -25.89304 -24.34608 -21.27125 -20.09024 -17.85483 -17.02002 -16.17241 -15.37166 -14.55118 -14.08187 -13.90720 -12.84132 -12.66012 -12.41498 -11.96543 -11.65984 -11.41239 -11.22134 -10.86296 -10.65576 -10.27146 -10.00309 -9.60500 -9.25335 -8.89007 -7.43234 -7.19429 -6.81526 -4.45164 2.53093 2.81088 3.01930 3.05297 3.07538 3.84940 4.37906 5.21288 5.42646 5.66433 6.15077 6.32774 6.50676 6.60666 6.84171 6.97777 7.03559 7.20835 7.31183 7.52053 7.80612 7.88323 8.04477 8.34129 8.55684 8.70240 8.76180 9.06293 10.07969 Molecular weight = 194.07amu Principal moments of inertia in cm(-1) A = 0.044218 B = 0.013020 C = 0.010368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.071073 B = 2150.088519 C = 2699.984146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.193 4.193 3 C -0.095 4.095 4 C -0.063 4.063 5 O -0.499 6.499 6 C 0.091 3.909 7 O -0.506 6.506 8 C -0.177 4.177 9 C 0.117 3.883 10 C -0.450 4.450 11 H 0.084 0.916 12 C 0.072 3.928 13 N -0.786 5.786 14 Si 0.912 3.088 15 H -0.267 1.267 16 H -0.277 1.277 17 H -0.261 1.261 18 H 0.043 0.957 19 H 0.063 0.937 20 H 0.039 0.961 21 H 0.098 0.902 22 H 0.355 0.645 23 H 0.371 0.629 24 H 0.130 0.870 25 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.130 1.108 -1.470 2.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.194 4.194 3 C -0.114 4.114 4 C -0.108 4.108 5 O -0.306 6.306 6 C 0.047 3.953 7 O -0.314 6.314 8 C -0.197 4.197 9 C 0.115 3.885 10 C -0.479 4.479 11 H 0.103 0.897 12 C -0.147 4.147 13 N -0.411 5.411 14 Si 0.736 3.264 15 H -0.192 1.192 16 H -0.202 1.202 17 H -0.185 1.185 18 H 0.062 0.938 19 H 0.082 0.918 20 H 0.058 0.942 21 H 0.116 0.884 22 H 0.207 0.793 23 H 0.224 0.776 24 H 0.148 0.852 25 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.086 0.887 -1.322 1.927 hybrid contribution -0.039 -0.690 -0.007 0.692 sum -1.126 0.197 -1.329 1.753 Atomic orbital electron populations 1.20412 0.93063 1.00788 0.99879 1.19450 0.94769 0.92522 1.12680 1.20347 0.92514 0.96894 1.01640 1.18377 0.89770 0.83522 1.19178 1.84778 1.77663 1.36603 1.31539 1.18792 0.81362 0.92351 1.02798 1.84733 1.17762 1.96789 1.32115 1.21536 0.94723 0.96008 1.07404 1.17379 0.91085 0.91939 0.88141 1.19596 1.01728 0.92215 1.34389 0.89749 1.26002 0.94346 1.01682 0.92684 1.69846 1.17394 1.31854 1.22005 0.86243 0.80490 0.80650 0.78988 1.19194 1.20209 1.18471 0.93812 0.91792 0.94191 0.88404 0.79348 0.77617 0.85192 0.90603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.72 9.39 36.01 0.34 -1.38 15 2 C -0.19 -4.64 5.90 -104.28 -0.62 -5.26 15 3 C -0.10 -2.22 9.54 -39.89 -0.38 -2.60 15 4 C -0.06 -1.52 6.74 -38.65 -0.26 -1.78 15 5 O -0.50 -10.73 13.27 -33.44 -0.44 -11.17 15 6 C 0.09 2.28 6.71 -39.14 -0.26 2.01 15 7 O -0.51 -11.37 13.28 -34.15 -0.45 -11.82 15 8 C -0.18 -4.68 8.61 -38.77 -0.33 -5.01 15 9 C 0.12 3.08 5.57 -106.82 -0.60 2.49 15 10 C -0.45 -11.49 8.12 -37.84 -0.31 -11.80 15 11 H 0.08 2.04 6.84 -52.49 -0.36 1.68 15 12 C 0.07 1.75 5.18 -17.34 -0.09 1.66 15 13 N -0.79 -20.11 10.87 55.54 0.60 -19.50 15 14 Si 0.91 18.11 29.59 -169.99 -5.03 13.08 15 15 H -0.27 -5.25 7.11 56.52 0.40 -4.85 15 16 H -0.28 -5.41 7.11 56.52 0.40 -5.01 15 17 H -0.26 -5.08 7.11 56.52 0.40 -4.68 15 18 H 0.04 0.82 8.14 -51.93 -0.42 0.40 15 19 H 0.06 1.31 6.75 -51.93 -0.35 0.96 15 20 H 0.04 0.72 8.08 -51.93 -0.42 0.30 15 21 H 0.10 2.04 8.06 -52.49 -0.42 1.62 15 22 H 0.36 6.19 9.06 45.56 0.41 6.60 15 23 H 0.37 6.54 9.06 45.56 0.41 6.95 15 24 H 0.13 3.55 6.14 -52.48 -0.32 3.23 15 25 H 0.28 6.59 8.30 -40.82 -0.34 6.25 15 LS Contribution 224.53 15.07 3.38 3.38 Total: -1.00 -29.21 224.53 -5.05 -34.26 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: -0.61 Total: 13.45 kcal Atomic # 6 Polarization: -19.17 SS G_CDS: -2.51 Total: -21.67 kcal Atomic # 7 Polarization: -20.11 SS G_CDS: 0.60 Total: -19.50 kcal Atomic # 8 Polarization: -22.10 SS G_CDS: -0.90 Total: -23.00 kcal Atomic # 14 Polarization: 18.11 SS G_CDS: -5.03 Total: 13.08 kcal Total LS contribution 3.38 Total: 3.38 kcal Total: -29.21 -5.05 -34.26 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259800890.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.478 kcal (2) G-P(sol) polarization free energy of solvation -29.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds