Wall clock time and date at job start Mon Mar 30 2020 02:48:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.36494 * 119.98410 * 2 1 4 4 C 1.39112 * 120.35894 * 180.02562 * 3 2 1 5 5 O 1.35739 * 119.84216 * 179.97438 * 4 3 2 6 6 C 1.39859 * 120.32096 * 359.97438 * 4 3 2 7 7 O 1.35968 * 120.02201 * 179.97438 * 6 4 3 8 8 C 1.37784 * 119.96034 * 0.02562 * 6 4 3 9 9 C 1.40813 * 119.98595 * 180.02562 * 2 1 3 10 10 C 1.41203 * 120.15512 * 359.95941 * 9 2 1 11 11 H 1.08000 * 120.00356 * 25.57168 * 10 9 2 12 12 C 1.39873 * 119.99650 * 205.57179 * 10 9 2 13 13 N 1.30886 * 120.00393 * 15.40003 * 12 10 9 14 14 Si 1.86801 * 119.99530 * 195.40224 * 12 10 9 15 15 H 1.48503 * 109.47262 * 90.00381 * 14 12 10 16 16 H 1.48509 * 109.46663 * 209.99959 * 14 12 10 17 17 H 1.48494 * 109.47504 * 329.99856 * 14 12 10 18 18 H 1.09005 * 109.46850 * 89.99549 * 1 2 3 19 19 H 1.08995 * 109.47275 * 209.99868 * 1 2 3 20 20 H 1.09000 * 109.46825 * 330.00250 * 1 2 3 21 21 H 1.07995 * 119.82287 * 359.74103 * 3 2 1 22 22 H 0.96700 * 114.00344 * 89.99641 * 5 4 3 23 23 H 0.96698 * 114.00738 * 270.02844 * 7 6 4 24 24 H 1.08004 * 120.17531 * 180.02562 * 8 6 4 25 25 H 0.97003 * 119.99997 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1892 1.1823 0.0000 4 6 3.5803 1.1914 -0.0005 5 8 4.2480 2.3732 -0.0011 6 6 4.2942 -0.0113 -0.0005 7 8 5.6538 0.0047 -0.0016 8 6 3.6190 -1.2123 -0.0005 9 6 2.2108 -1.2197 -0.0005 10 6 1.5078 -2.4442 -0.0002 11 1 0.5070 -2.4925 -0.4033 12 6 2.1076 -3.5948 0.5222 13 7 3.1745 -3.4931 1.2735 14 14 1.3860 -5.2765 0.1474 15 1 2.0051 -5.8164 -1.0897 16 1 1.6604 -6.1965 1.2804 17 1 -0.0812 -5.1537 -0.0463 18 1 -0.3633 0.0001 -1.0277 19 1 -0.3633 -0.8899 0.5138 20 1 -0.3633 0.8900 0.5138 21 1 1.6460 2.1157 -0.0042 22 1 4.4418 2.7159 0.8822 23 1 6.0465 0.0094 -0.8852 24 1 4.1668 -2.1431 -0.0001 25 1 3.5902 -4.2910 1.6361 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259800890.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:24 Heat of formation + Delta-G solvation = -102.835162 kcal Electronic energy + Delta-G solvation = -11894.798982 eV Core-core repulsion = 9644.061520 eV Total energy + Delta-G solvation = -2250.737463 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 194.073 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.51189 -37.81169 -37.52389 -35.23222 -32.04781 -30.99112 -27.69310 -26.16869 -23.14663 -21.91149 -19.69474 -18.80045 -18.01045 -17.14918 -16.33945 -15.88132 -15.65420 -14.58373 -14.44392 -14.12213 -13.70039 -13.38388 -13.14149 -12.83382 -12.62371 -12.24915 -12.06328 -11.74332 -11.40284 -11.06743 -10.70013 -9.32464 -9.06087 -8.63665 -6.36732 0.70722 0.93715 1.39806 1.48569 1.53685 2.19284 2.56879 3.40671 3.65064 3.86979 4.37914 4.65667 4.84072 5.03373 5.07496 5.15755 5.30494 5.33256 5.52457 5.71375 5.94644 6.01803 6.18186 6.48256 6.82613 6.86724 6.93441 7.30659 8.28624 Molecular weight = 194.07amu Principal moments of inertia in cm(-1) A = 0.044218 B = 0.013020 C = 0.010368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.071073 B = 2150.088519 C = 2699.984146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.202 4.202 3 C -0.100 4.100 4 C -0.066 4.066 5 O -0.500 6.500 6 C 0.082 3.918 7 O -0.512 6.512 8 C -0.205 4.205 9 C 0.088 3.912 10 C -0.476 4.476 11 H 0.091 0.909 12 C 0.030 3.970 13 N -0.823 5.823 14 Si 0.986 3.014 15 H -0.264 1.264 16 H -0.271 1.271 17 H -0.252 1.252 18 H 0.059 0.941 19 H 0.056 0.944 20 H 0.064 0.936 21 H 0.126 0.874 22 H 0.378 0.622 23 H 0.392 0.608 24 H 0.111 0.889 25 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.088 1.378 -1.725 3.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.204 4.204 3 C -0.118 4.118 4 C -0.111 4.111 5 O -0.309 6.309 6 C 0.038 3.962 7 O -0.322 6.322 8 C -0.226 4.226 9 C 0.085 3.915 10 C -0.505 4.505 11 H 0.109 0.891 12 C -0.186 4.186 13 N -0.448 5.448 14 Si 0.807 3.193 15 H -0.188 1.188 16 H -0.196 1.196 17 H -0.175 1.175 18 H 0.077 0.923 19 H 0.075 0.925 20 H 0.083 0.917 21 H 0.144 0.856 22 H 0.231 0.769 23 H 0.248 0.752 24 H 0.128 0.872 25 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.033 1.185 -1.579 2.834 hybrid contribution 0.342 -0.640 0.080 0.730 sum -1.690 0.546 -1.499 2.324 Atomic orbital electron populations 1.20418 0.90508 1.01664 1.01116 1.19908 0.96853 0.92068 1.11545 1.20648 0.92456 0.97815 1.00901 1.18503 0.90304 0.83880 1.18427 1.84699 1.77378 1.35407 1.33399 1.18919 0.82187 0.92447 1.02656 1.84655 1.16816 1.96736 1.34034 1.21493 0.95275 0.95906 1.09876 1.17778 0.91373 0.93397 0.88955 1.19874 1.02323 0.92932 1.35335 0.89068 1.26904 0.94472 1.05374 0.91822 1.69922 1.18788 1.33193 1.22925 0.85131 0.79954 0.75471 0.78781 1.18834 1.19569 1.17504 0.92258 0.92514 0.91687 0.85632 0.76874 0.75227 0.87162 0.90067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.10 9.39 71.24 0.67 -2.43 15 2 C -0.20 -9.54 5.90 -19.64 -0.12 -9.66 15 3 C -0.10 -4.46 9.54 22.07 0.21 -4.25 15 4 C -0.07 -3.07 6.74 22.87 0.15 -2.91 15 5 O -0.50 -20.33 13.27 -76.75 -1.02 -21.35 15 6 C 0.08 4.11 6.71 22.55 0.15 4.26 15 7 O -0.51 -22.81 13.28 -79.31 -1.05 -23.86 15 8 C -0.21 -11.11 8.61 22.79 0.20 -10.92 15 9 C 0.09 4.65 5.57 -21.29 -0.12 4.53 15 10 C -0.48 -24.45 8.12 23.39 0.19 -24.26 15 11 H 0.09 4.39 6.84 -2.91 -0.02 4.37 15 12 C 0.03 1.45 5.18 85.23 0.44 1.89 15 13 N -0.82 -42.92 10.87 21.82 0.24 -42.69 15 14 Si 0.99 36.87 29.59 68.60 2.03 38.90 15 15 H -0.26 -9.63 7.11 99.48 0.71 -8.93 15 16 H -0.27 -9.77 7.11 99.48 0.71 -9.06 15 17 H -0.25 -8.95 7.11 99.48 0.71 -8.24 15 18 H 0.06 2.08 8.14 -2.38 -0.02 2.07 15 19 H 0.06 2.25 6.75 -2.39 -0.02 2.23 15 20 H 0.06 2.14 8.08 -2.39 -0.02 2.12 15 21 H 0.13 4.83 8.06 -2.91 -0.02 4.81 15 22 H 0.38 12.15 9.06 -74.06 -0.67 11.48 15 23 H 0.39 13.56 9.06 -74.06 -0.67 12.89 15 24 H 0.11 6.28 6.14 -2.91 -0.02 6.26 15 25 H 0.29 13.67 8.30 -92.71 -0.77 12.91 15 Total: -1.00 -61.71 224.53 1.87 -59.84 By element: Atomic # 1 Polarization: 33.02 SS G_CDS: -0.11 Total: 32.91 kcal Atomic # 6 Polarization: -45.53 SS G_CDS: 1.78 Total: -43.75 kcal Atomic # 7 Polarization: -42.92 SS G_CDS: 0.24 Total: -42.69 kcal Atomic # 8 Polarization: -43.14 SS G_CDS: -2.07 Total: -45.21 kcal Atomic # 14 Polarization: 36.87 SS G_CDS: 2.03 Total: 38.90 kcal Total: -61.71 1.87 -59.84 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259800890.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.996 kcal (2) G-P(sol) polarization free energy of solvation -61.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds