Wall clock time and date at job start Mon Mar 30 2020 02:36:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30871 * 1 3 3 Si 1.86802 * 120.00139 * 2 1 4 4 H 1.48493 * 109.46989 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46929 * 300.00756 * 3 2 1 6 6 H 1.48497 * 109.46978 * 60.00454 * 3 2 1 7 7 C 1.40065 * 119.99806 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00198 * 179.97438 * 7 2 1 9 9 C 1.39918 * 120.00416 * 359.97438 * 7 2 1 10 10 C 1.38277 * 125.40914 * 180.02562 * 9 7 2 11 11 C 1.36816 * 114.19816 * 179.97438 * 10 9 7 12 12 C 1.34532 * 115.34046 * 0.02562 * 11 10 9 13 13 C 1.50706 * 124.92539 * 179.97438 * 12 11 10 14 14 C 1.53002 * 117.49668 * 240.00092 * 13 12 11 15 15 C 1.53000 * 60.02940 * 252.51929 * 14 13 12 16 16 S 1.75793 * 110.14907 * 0.22684 * 12 11 10 17 17 H 0.96999 * 120.00004 * 359.97438 * 1 2 3 18 18 H 1.07996 * 122.90547 * 359.97438 * 10 9 7 19 19 H 1.08004 * 122.32673 * 180.02562 * 11 10 9 20 20 H 1.09000 * 115.55924 * 25.68498 * 13 12 11 21 21 H 1.09002 * 117.49918 * 145.01964 * 14 13 12 22 22 H 1.09002 * 117.49754 * 0.02562 * 14 13 12 23 23 H 1.09008 * 117.49673 * 107.47884 * 15 14 13 24 24 H 1.08999 * 117.49942 * 252.47315 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.7027 1.3463 -0.0006 5 1 1.8839 2.3965 -1.2124 6 1 1.8841 2.3963 1.2125 7 6 2.0090 -1.2130 -0.0005 8 1 3.0890 -1.2131 -0.0010 9 6 1.3094 -2.4248 -0.0005 10 6 1.8849 -3.6821 -0.0005 11 6 0.9836 -4.7114 0.0000 12 6 -0.3105 -4.3435 -0.0001 13 6 -1.4783 -5.2962 -0.0001 14 6 -2.4545 -5.2170 -1.1755 15 6 -2.8745 -4.7026 0.2029 16 16 -0.4417 -2.5905 -0.0074 17 1 -0.4850 0.8400 0.0004 18 1 2.9535 -3.8382 -0.0009 19 1 1.2897 -5.7471 0.0005 20 1 -1.2825 -6.2801 0.4262 21 1 -2.9011 -6.1488 -1.5225 22 1 -2.2519 -4.4761 -1.9490 23 1 -2.9479 -3.6232 0.3364 24 1 -3.5977 -5.2957 0.7625 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259816495.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:09 Heat of formation + Delta-G solvation = 11.167378 kcal Electronic energy + Delta-G solvation = -9665.901593 eV Core-core repulsion = 7862.860522 eV Total energy + Delta-G solvation = -1803.041070 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 194.046 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.49367 -37.16979 -35.48858 -30.85805 -27.22249 -24.08615 -23.15832 -21.93743 -20.18955 -19.27552 -17.16329 -16.45043 -15.97626 -15.24002 -14.61930 -14.08052 -13.67997 -13.41409 -12.98882 -12.84700 -12.50911 -12.35141 -11.95678 -11.72699 -11.58970 -11.12205 -11.01014 -10.74618 -9.14114 -8.79282 -8.67466 -6.42471 0.77054 1.36251 1.48296 1.54340 1.68135 2.06789 2.21706 2.25354 3.08170 3.27184 4.00794 4.14580 4.34710 4.71926 4.80337 4.90499 5.01621 5.12440 5.22950 5.33774 5.38841 5.68585 5.91003 6.16369 6.27285 6.64691 6.66964 8.07672 Molecular weight = 194.05amu Principal moments of inertia in cm(-1) A = 0.066342 B = 0.011360 C = 0.009970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 421.954828 B = 2464.170260 C = 2807.774350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.013 3.987 3 Si 1.011 2.989 4 H -0.255 1.255 5 H -0.259 1.259 6 H -0.259 1.259 7 C -0.426 4.426 8 H 0.093 0.907 9 C -0.002 4.002 10 C -0.383 4.383 11 C -0.083 4.083 12 C -0.349 4.349 13 C -0.066 4.066 14 C -0.174 4.174 15 C -0.179 4.179 16 S 0.117 5.883 17 H 0.306 0.694 18 H 0.098 0.902 19 H 0.111 0.889 20 H 0.113 0.887 21 H 0.119 0.881 22 H 0.073 0.927 23 H 0.074 0.926 24 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.134 -0.714 -0.301 3.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C -0.204 4.204 3 Si 0.829 3.171 4 H -0.179 1.179 5 H -0.184 1.184 6 H -0.183 1.183 7 C -0.461 4.461 8 H 0.111 0.889 9 C -0.122 4.122 10 C -0.408 4.408 11 C -0.112 4.112 12 C -0.465 4.465 13 C -0.086 4.086 14 C -0.211 4.211 15 C -0.216 4.216 16 S 0.376 5.624 17 H 0.119 0.881 18 H 0.116 0.884 19 H 0.129 0.871 20 H 0.130 0.870 21 H 0.137 0.863 22 H 0.092 0.908 23 H 0.093 0.907 24 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -4.529 0.337 -0.311 4.552 hybrid contribution 1.774 -0.478 0.009 1.838 sum -2.755 -0.141 -0.301 2.775 Atomic orbital electron populations 1.68907 1.08960 1.31983 1.33977 1.27183 0.95923 1.05655 0.91633 0.84693 0.78896 0.74090 0.79402 1.17881 1.18370 1.18337 1.19521 0.95699 0.89828 1.41074 0.88858 1.22286 0.96045 0.96699 0.97128 1.19925 0.98184 0.91829 1.30882 1.19390 0.92294 0.98076 1.01457 1.24170 0.96573 0.99683 1.26040 1.20136 0.87471 0.97582 1.03425 1.23049 1.03505 1.03243 0.91310 1.23014 0.97703 1.00517 1.00392 1.84177 1.04991 0.96743 1.76445 0.88095 0.88436 0.87094 0.86956 0.86332 0.90829 0.90741 0.86281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -40.56 10.65 21.86 0.23 -40.32 14 2 C 0.01 0.64 5.50 85.28 0.47 1.11 14 3 Si 1.01 36.32 29.56 68.60 2.03 38.35 14 4 H -0.26 -8.99 7.11 99.48 0.71 -8.28 14 5 H -0.26 -8.84 7.11 99.48 0.71 -8.13 14 6 H -0.26 -8.82 7.11 99.48 0.71 -8.11 14 7 C -0.43 -23.06 9.29 23.12 0.21 -22.85 14 8 H 0.09 4.83 7.85 -2.91 -0.02 4.81 14 9 C 0.00 -0.09 6.19 22.69 0.14 0.05 14 10 C -0.38 -20.99 10.20 21.95 0.22 -20.77 14 11 C -0.08 -4.20 10.00 21.09 0.21 -3.99 14 12 C -0.35 -16.98 6.16 24.84 0.15 -16.82 14 13 C -0.07 -2.57 6.21 -11.51 -0.07 -2.64 14 14 C -0.17 -5.80 10.23 30.60 0.31 -5.49 14 15 C -0.18 -6.06 10.04 30.62 0.31 -5.75 14 16 S 0.12 6.17 19.06 -56.49 -1.08 5.10 14 17 H 0.31 13.52 8.30 -92.71 -0.77 12.76 14 18 H 0.10 5.13 8.06 -2.91 -0.02 5.11 14 19 H 0.11 4.96 8.06 -2.91 -0.02 4.94 14 20 H 0.11 3.89 8.14 -2.39 -0.02 3.87 14 21 H 0.12 3.11 8.14 -2.39 -0.02 3.09 14 22 H 0.07 2.72 8.14 -2.39 -0.02 2.70 14 23 H 0.07 2.82 7.25 -2.38 -0.02 2.81 14 24 H 0.12 3.21 8.14 -2.39 -0.02 3.19 14 Total: -1.00 -59.63 226.49 4.33 -55.30 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: 1.19 Total: 18.74 kcal Atomic # 6 Polarization: -79.12 SS G_CDS: 1.96 Total: -77.16 kcal Atomic # 7 Polarization: -40.56 SS G_CDS: 0.23 Total: -40.32 kcal Atomic # 14 Polarization: 36.32 SS G_CDS: 2.03 Total: 38.35 kcal Atomic # 16 Polarization: 6.17 SS G_CDS: -1.08 Total: 5.10 kcal Total: -59.63 4.33 -55.30 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259816495.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.466 kcal (2) G-P(sol) polarization free energy of solvation -59.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.298 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds