Wall clock time and date at job start Mon Mar 30 2020 02:33:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30567 * 1 3 3 Si 1.86794 * 119.99917 * 2 1 4 4 H 1.48507 * 109.47248 * 269.99566 * 3 2 1 5 5 H 1.48497 * 109.47613 * 29.99695 * 3 2 1 6 6 H 1.48498 * 109.47296 * 149.99967 * 3 2 1 7 7 C 1.40390 * 119.99979 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99593 * 163.60923 * 7 2 1 9 9 C 1.40711 * 119.99973 * 343.89120 * 7 2 1 10 10 C 1.40764 * 120.60482 * 334.10594 * 9 7 2 11 11 C 1.37603 * 119.93634 * 179.72300 * 10 9 7 12 12 C 1.38567 * 121.27315 * 0.56611 * 11 10 9 13 13 C 1.38423 * 121.27149 * 359.71506 * 12 11 10 14 14 F 1.35101 * 120.02595 * 179.97438 * 13 12 11 15 15 C 1.39956 * 119.94200 * 359.97438 * 13 12 11 16 16 C 1.46404 * 120.60666 * 179.97438 * 15 13 12 17 17 O 1.21363 * 120.00076 * 0.02562 * 16 15 13 18 18 H 0.97001 * 120.00496 * 0.02562 * 1 2 3 19 19 H 1.08007 * 120.03310 * 359.97438 * 10 9 7 20 20 H 1.07999 * 119.36339 * 180.26154 * 11 10 9 21 21 H 1.08000 * 119.36171 * 179.74012 * 12 11 10 22 22 H 1.07993 * 119.99972 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3057 0.0000 0.0000 3 14 2.2396 1.6177 0.0000 4 1 2.4872 2.0464 -1.4001 5 1 1.4371 2.6527 0.6999 6 1 3.5372 1.4402 0.7000 7 6 2.0076 -1.2158 0.0005 8 1 3.0547 -1.2349 -0.2634 9 6 1.3455 -2.4103 0.3392 10 6 0.2100 -2.3893 1.1709 11 6 -0.4302 -3.5651 1.4887 12 6 0.0270 -4.7841 1.0142 13 6 1.1418 -4.8650 0.1977 14 9 1.5660 -6.0670 -0.2502 15 6 1.8291 -3.7006 -0.1634 16 6 3.0102 -3.7693 -1.0258 17 8 3.4014 -4.8429 -1.4347 18 1 -0.4851 0.8400 -0.0004 19 1 -0.1607 -1.4508 1.5560 20 1 -1.3031 -3.5379 2.1241 21 1 -0.4969 -5.6885 1.2864 22 1 3.5334 -2.8646 -1.2980 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259816681.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:14 Heat of formation + Delta-G solvation = -75.144440 kcal Electronic energy + Delta-G solvation = -11498.608945 eV Core-core repulsion = 9125.611937 eV Total energy + Delta-G solvation = -2372.997008 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 194.048 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -47.71560 -37.94842 -36.62203 -34.04016 -30.42665 -29.10306 -25.88477 -23.38256 -21.22997 -19.61253 -17.80782 -16.18922 -15.41257 -15.19629 -14.84319 -14.44227 -13.78753 -13.41776 -12.92292 -12.77101 -12.23991 -11.94907 -11.42062 -11.18881 -10.87386 -10.59393 -10.41156 -10.04610 -9.57238 -8.43581 -7.78393 -7.53847 -7.25486 -4.87069 1.90236 2.53870 2.84985 2.88500 2.97941 3.59255 3.72936 4.23437 5.27580 5.44607 5.65389 6.04930 6.31355 6.41400 6.65087 6.75251 6.77784 7.22719 7.41499 7.57535 7.68196 7.81192 8.17172 8.29496 8.50829 8.73974 9.64558 Molecular weight = 194.05amu Principal moments of inertia in cm(-1) A = 0.044900 B = 0.013194 C = 0.010475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.453395 B = 2121.709177 C = 2672.431013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.758 5.758 2 C 0.074 3.926 3 Si 0.920 3.080 4 H -0.263 1.263 5 H -0.271 1.271 6 H -0.254 1.254 7 C -0.428 4.428 8 H 0.093 0.907 9 C 0.164 3.836 10 C -0.184 4.184 11 C -0.054 4.054 12 C -0.297 4.297 13 C 0.185 3.815 14 F -0.146 7.146 15 C -0.357 4.357 16 C 0.387 3.613 17 O -0.517 6.517 18 H 0.292 0.708 19 H 0.126 0.874 20 H 0.100 0.900 21 H 0.102 0.898 22 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.042 3.401 1.943 3.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.380 5.380 2 C -0.150 4.150 3 Si 0.742 3.258 4 H -0.188 1.188 5 H -0.196 1.196 6 H -0.178 1.178 7 C -0.454 4.454 8 H 0.111 0.889 9 C 0.160 3.840 10 C -0.203 4.203 11 C -0.073 4.073 12 C -0.317 4.317 13 C 0.165 3.835 14 F -0.124 7.124 15 C -0.360 4.360 16 C 0.254 3.746 17 O -0.398 6.398 18 H 0.104 0.896 19 H 0.144 0.856 20 H 0.118 0.882 21 H 0.121 0.879 22 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -0.043 2.970 1.701 3.423 hybrid contribution 0.091 0.651 -0.002 0.658 sum 0.048 3.622 1.699 4.001 Atomic orbital electron populations 1.69688 1.08131 1.30821 1.29361 1.26217 0.94912 1.02286 0.91589 0.86087 0.80715 0.79044 0.79906 1.18794 1.19555 1.17759 1.19834 0.98228 0.90558 1.36788 0.88866 1.18497 0.89673 0.89867 0.85962 1.21372 0.99409 0.97137 1.02359 1.20552 0.97453 0.92172 0.97107 1.20207 1.02072 0.98226 1.11169 1.17804 0.93056 0.79181 0.93428 1.91416 1.89617 1.43923 1.87488 1.21417 1.06674 0.92959 1.14996 1.23270 0.82992 0.91581 0.76724 1.90440 1.65614 1.34070 1.49705 0.89629 0.85627 0.88152 0.87940 0.89922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -16.92 10.96 55.57 0.61 -16.31 14 2 C 0.07 1.59 5.18 -17.28 -0.09 1.50 14 3 Si 0.92 15.93 29.59 -169.99 -5.03 10.89 14 4 H -0.26 -4.54 7.11 56.52 0.40 -4.14 14 5 H -0.27 -4.59 7.11 56.52 0.40 -4.18 14 6 H -0.25 -4.38 7.11 56.52 0.40 -3.98 14 7 C -0.43 -9.89 8.52 -37.84 -0.32 -10.21 14 8 H 0.09 2.00 6.67 -52.48 -0.35 1.65 14 9 C 0.16 4.04 5.73 -104.61 -0.60 3.44 14 10 C -0.18 -4.34 8.69 -38.86 -0.34 -4.68 14 11 C -0.05 -1.18 9.96 -39.69 -0.40 -1.58 14 12 C -0.30 -6.75 9.97 -39.39 -0.39 -7.14 14 13 C 0.18 4.60 7.29 -38.87 -0.28 4.32 14 14 F -0.15 -3.68 15.58 2.25 0.04 -3.65 14 15 C -0.36 -8.93 6.07 -102.57 -0.62 -9.55 14 16 C 0.39 9.18 11.04 34.02 0.38 9.56 14 17 O -0.52 -13.46 16.19 5.49 0.09 -13.37 14 18 H 0.29 5.80 8.29 -40.82 -0.34 5.46 14 19 H 0.13 2.94 6.23 -52.48 -0.33 2.61 14 20 H 0.10 1.88 8.06 -52.49 -0.42 1.45 14 21 H 0.10 2.09 8.06 -52.49 -0.42 1.67 14 22 H 0.08 1.73 6.68 -52.49 -0.35 1.38 14 LS Contribution 210.07 15.07 3.17 3.17 Total: -1.00 -26.88 210.07 -4.81 -31.69 By element: Atomic # 1 Polarization: 2.92 SS G_CDS: -1.01 Total: 1.92 kcal Atomic # 6 Polarization: -11.68 SS G_CDS: -2.67 Total: -14.34 kcal Atomic # 7 Polarization: -16.92 SS G_CDS: 0.61 Total: -16.31 kcal Atomic # 8 Polarization: -13.46 SS G_CDS: 0.09 Total: -13.37 kcal Atomic # 9 Polarization: -3.68 SS G_CDS: 0.04 Total: -3.65 kcal Atomic # 14 Polarization: 15.93 SS G_CDS: -5.03 Total: 10.89 kcal Total LS contribution 3.17 Total: 3.17 kcal Total: -26.88 -4.81 -31.69 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259816681.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.456 kcal (2) G-P(sol) polarization free energy of solvation -26.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds