Wall clock time and date at job start Mon Mar 30 2020 02:17:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52994 * 109.47085 * 2 1 4 4 C 1.50709 * 109.46997 * 180.02562 * 3 2 1 5 5 C 1.39299 * 126.46894 * 264.68456 * 4 3 2 6 6 C 1.35977 * 108.08501 * 179.89084 * 5 4 3 7 7 N 1.36158 * 109.05345 * 0.38185 * 6 5 4 8 8 C 1.46502 * 125.74545 * 179.76547 * 7 6 5 9 9 C 1.38027 * 108.51540 * 359.75846 * 7 6 5 10 10 C 1.39947 * 126.35719 * 179.97438 * 9 7 6 11 11 H 1.08000 * 119.99954 * 138.32000 * 10 9 7 12 12 C 1.40063 * 119.99905 * 318.31924 * 10 9 7 13 13 N 1.30858 * 120.00163 * 342.70698 * 12 10 9 14 14 Si 1.86804 * 119.99902 * 162.70822 * 12 10 9 15 15 H 1.48499 * 109.47145 * 0.02562 * 14 12 10 16 16 H 1.48504 * 109.47284 * 119.99935 * 14 12 10 17 17 H 1.48494 * 109.47240 * 239.99997 * 14 12 10 18 18 H 1.08998 * 109.47580 * 59.99859 * 1 2 3 19 19 H 1.09004 * 109.47281 * 180.02562 * 1 2 3 20 20 H 1.09009 * 109.47500 * 299.99885 * 1 2 3 21 21 H 1.09004 * 109.46949 * 120.00313 * 2 1 3 22 22 H 1.09003 * 109.47096 * 239.99526 * 2 1 3 23 23 H 1.09002 * 109.47170 * 299.99558 * 3 2 1 24 24 H 1.08995 * 109.47337 * 60.00026 * 3 2 1 25 25 H 1.08001 * 125.95876 * 0.02562 * 5 4 3 26 26 H 1.07998 * 125.47142 * 180.17618 * 6 5 4 27 27 H 1.09004 * 109.46849 * 275.60832 * 8 7 6 28 28 H 1.09003 * 109.46686 * 35.60224 * 8 7 6 29 29 H 1.08997 * 109.47267 * 155.60322 * 8 7 6 30 30 H 0.97005 * 120.00134 * 185.06699 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 3.5470 1.4424 -0.0006 5 6 4.3755 1.5460 1.1144 6 6 5.6656 1.5039 0.6871 7 7 5.6810 1.3849 -0.6692 8 6 6.8796 1.3119 -1.5084 9 6 4.3772 1.3446 -1.1204 10 6 3.9635 1.2280 -2.4523 11 1 3.1370 0.5809 -2.7063 12 6 4.6213 1.9506 -3.4557 13 7 5.3771 2.9708 -3.1389 14 14 4.4196 1.4581 -5.2463 15 1 3.5191 0.2808 -5.3374 16 1 3.8325 2.5897 -6.0079 17 1 5.7461 1.1126 -5.8171 18 1 -0.3634 0.5138 -0.8899 19 1 -0.3634 -1.0277 0.0005 20 1 -0.3634 0.5138 0.8900 21 1 1.8933 -0.5139 0.8900 22 1 1.8933 -0.5139 -0.8900 23 1 1.6766 1.9563 -0.8900 24 1 1.6766 1.9563 0.8899 25 1 4.0498 1.6409 2.1398 26 1 6.5380 1.5595 1.3213 27 1 7.2341 2.3199 -1.7240 28 1 7.6576 0.7578 -0.9832 29 1 6.6390 0.8038 -2.4422 30 1 5.7735 3.5159 -3.8365 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259819322.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:11 Heat of formation + Delta-G solvation = 18.116956 kcal Electronic energy + Delta-G solvation = -12146.647358 eV Core-core repulsion = 10134.706529 eV Total energy + Delta-G solvation = -2011.940828 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 193.116 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.15582 -34.20380 -33.28954 -30.93834 -28.60063 -26.86281 -24.36103 -23.40819 -20.61468 -19.17271 -17.96930 -16.45168 -15.07524 -14.56099 -14.12023 -13.58588 -13.04191 -12.66508 -12.29456 -11.93513 -11.80540 -11.41572 -11.23506 -11.00394 -10.88680 -10.60303 -10.42335 -10.10302 -10.01568 -9.83689 -9.45551 -8.88353 -6.89441 -6.62010 -6.35201 -4.17055 3.00491 3.14588 3.20783 3.91839 4.07818 4.40048 4.69595 5.23519 5.79919 5.85668 6.00076 6.05030 6.39264 6.47629 6.50077 6.52983 6.75003 6.77250 6.80939 6.93168 7.10406 7.23729 7.32697 7.39008 7.76412 7.92342 8.23502 8.42848 8.83130 9.00495 9.24054 9.45396 10.43783 Molecular weight = 193.12amu Principal moments of inertia in cm(-1) A = 0.028524 B = 0.015688 C = 0.010887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.377582 B = 1784.333854 C = 2571.154361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.116 4.116 3 C -0.011 4.011 4 C -0.289 4.289 5 C -0.174 4.174 6 C -0.115 4.115 7 N -0.447 5.447 8 C 0.109 3.891 9 C 0.248 3.752 10 C -0.473 4.473 11 H 0.085 0.915 12 C 0.076 3.924 13 N -0.828 5.828 14 Si 0.898 3.102 15 H -0.262 1.262 16 H -0.277 1.277 17 H -0.277 1.277 18 H 0.050 0.950 19 H 0.041 0.959 20 H 0.045 0.955 21 H 0.049 0.951 22 H 0.058 0.942 23 H 0.052 0.948 24 H 0.038 0.962 25 H 0.100 0.900 26 H 0.124 0.876 27 H 0.062 0.938 28 H 0.040 0.960 29 H 0.069 0.931 30 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.349 -2.971 1.021 3.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.154 4.154 3 C -0.049 4.049 4 C -0.293 4.293 5 C -0.200 4.200 6 C -0.241 4.241 7 N -0.126 5.126 8 C -0.034 4.034 9 C 0.136 3.864 10 C -0.509 4.509 11 H 0.103 0.897 12 C -0.137 4.137 13 N -0.458 5.458 14 Si 0.724 3.276 15 H -0.186 1.186 16 H -0.203 1.203 17 H -0.202 1.202 18 H 0.069 0.931 19 H 0.061 0.939 20 H 0.064 0.936 21 H 0.068 0.932 22 H 0.077 0.923 23 H 0.070 0.930 24 H 0.056 0.944 25 H 0.118 0.882 26 H 0.142 0.858 27 H 0.081 0.919 28 H 0.059 0.941 29 H 0.088 0.912 30 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.837 -2.860 0.786 3.082 hybrid contribution 0.182 0.021 -0.859 0.878 sum -0.655 -2.839 -0.073 2.915 Atomic orbital electron populations 1.21817 0.97668 1.00195 1.01040 1.21533 0.93370 0.99122 1.01336 1.19422 0.92130 0.94040 0.99333 1.19379 0.93041 1.24226 0.92669 1.20101 0.92540 1.10831 0.96542 1.21054 0.97153 1.21942 0.83908 1.44165 1.05995 1.57564 1.04868 1.21517 0.85612 1.01517 0.94710 1.17718 0.80288 0.95502 0.92902 1.18445 1.16214 1.26841 0.89412 0.89703 1.25747 0.93492 0.93923 1.00564 1.69827 1.28050 1.13044 1.34875 0.86421 0.78713 0.79626 0.82880 1.18630 1.20291 1.20243 0.93136 0.93949 0.93556 0.93210 0.92304 0.92961 0.94367 0.88171 0.85833 0.91939 0.94144 0.91198 0.91540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.36 9.91 37.15 0.37 -1.99 16 2 C -0.12 -2.24 5.92 -26.74 -0.16 -2.40 16 3 C -0.01 -0.25 5.49 -27.88 -0.15 -0.40 16 4 C -0.29 -7.41 5.50 -103.66 -0.57 -7.98 16 5 C -0.17 -4.27 10.74 -40.00 -0.43 -4.69 16 6 C -0.11 -2.78 11.42 -16.44 -0.19 -2.97 16 7 N -0.45 -11.48 3.13 -121.44 -0.38 -11.86 16 8 C 0.11 2.46 9.29 59.85 0.56 3.01 16 9 C 0.25 6.77 6.05 -83.87 -0.51 6.27 16 10 C -0.47 -12.76 8.68 -38.26 -0.33 -13.09 16 11 H 0.09 2.25 7.90 -52.49 -0.41 1.84 16 12 C 0.08 1.95 4.10 -17.28 -0.07 1.88 16 13 N -0.83 -21.78 10.98 55.56 0.61 -21.17 16 14 Si 0.90 19.19 29.60 -169.99 -5.03 14.15 16 15 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 16 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 17 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 18 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 19 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 20 H 0.05 0.67 8.14 -51.92 -0.42 0.25 16 21 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 22 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 23 H 0.05 1.20 8.08 -51.93 -0.42 0.78 16 24 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.10 2.19 8.06 -52.49 -0.42 1.77 16 26 H 0.12 2.61 8.06 -52.49 -0.42 2.19 16 27 H 0.06 1.43 7.42 -51.93 -0.39 1.05 16 28 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.07 1.61 6.79 -51.93 -0.35 1.25 16 30 H 0.27 6.66 8.30 -40.82 -0.34 6.33 16 LS Contribution 253.76 15.07 3.82 3.82 Total: -1.00 -28.50 253.76 -6.98 -35.48 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: -4.51 Total: 1.94 kcal Atomic # 6 Polarization: -20.88 SS G_CDS: -1.49 Total: -22.37 kcal Atomic # 7 Polarization: -33.26 SS G_CDS: 0.23 Total: -33.03 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -5.03 Total: 14.15 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -28.50 -6.98 -35.48 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259819322.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.594 kcal (2) G-P(sol) polarization free energy of solvation -28.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.477 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds