Wall clock time and date at job start Mon Mar 30 2020 02:17:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52994 * 109.47085 * 2 1 4 4 C 1.50709 * 109.46997 * 180.02562 * 3 2 1 5 5 C 1.39299 * 126.46894 * 264.68456 * 4 3 2 6 6 C 1.35977 * 108.08501 * 179.89084 * 5 4 3 7 7 N 1.36158 * 109.05345 * 0.38185 * 6 5 4 8 8 C 1.46502 * 125.74545 * 179.76547 * 7 6 5 9 9 C 1.38027 * 108.51540 * 359.75846 * 7 6 5 10 10 C 1.39947 * 126.35719 * 179.97438 * 9 7 6 11 11 H 1.08000 * 119.99954 * 138.32000 * 10 9 7 12 12 C 1.40063 * 119.99905 * 318.31924 * 10 9 7 13 13 N 1.30858 * 120.00163 * 342.70698 * 12 10 9 14 14 Si 1.86804 * 119.99902 * 162.70822 * 12 10 9 15 15 H 1.48499 * 109.47145 * 0.02562 * 14 12 10 16 16 H 1.48504 * 109.47284 * 119.99935 * 14 12 10 17 17 H 1.48494 * 109.47240 * 239.99997 * 14 12 10 18 18 H 1.08998 * 109.47580 * 59.99859 * 1 2 3 19 19 H 1.09004 * 109.47281 * 180.02562 * 1 2 3 20 20 H 1.09009 * 109.47500 * 299.99885 * 1 2 3 21 21 H 1.09004 * 109.46949 * 120.00313 * 2 1 3 22 22 H 1.09003 * 109.47096 * 239.99526 * 2 1 3 23 23 H 1.09002 * 109.47170 * 299.99558 * 3 2 1 24 24 H 1.08995 * 109.47337 * 60.00026 * 3 2 1 25 25 H 1.08001 * 125.95876 * 0.02562 * 5 4 3 26 26 H 1.07998 * 125.47142 * 180.17618 * 6 5 4 27 27 H 1.09004 * 109.46849 * 275.60832 * 8 7 6 28 28 H 1.09003 * 109.46686 * 35.60224 * 8 7 6 29 29 H 1.08997 * 109.47267 * 155.60322 * 8 7 6 30 30 H 0.97005 * 120.00134 * 185.06699 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 3.5470 1.4424 -0.0006 5 6 4.3755 1.5460 1.1144 6 6 5.6656 1.5039 0.6871 7 7 5.6810 1.3849 -0.6692 8 6 6.8796 1.3119 -1.5084 9 6 4.3772 1.3446 -1.1204 10 6 3.9635 1.2280 -2.4523 11 1 3.1370 0.5809 -2.7063 12 6 4.6213 1.9506 -3.4557 13 7 5.3771 2.9708 -3.1389 14 14 4.4196 1.4581 -5.2463 15 1 3.5191 0.2808 -5.3374 16 1 3.8325 2.5897 -6.0079 17 1 5.7461 1.1126 -5.8171 18 1 -0.3634 0.5138 -0.8899 19 1 -0.3634 -1.0277 0.0005 20 1 -0.3634 0.5138 0.8900 21 1 1.8933 -0.5139 0.8900 22 1 1.8933 -0.5139 -0.8900 23 1 1.6766 1.9563 -0.8900 24 1 1.6766 1.9563 0.8899 25 1 4.0498 1.6409 2.1398 26 1 6.5380 1.5595 1.3213 27 1 7.2341 2.3199 -1.7240 28 1 7.6576 0.7578 -0.9832 29 1 6.6390 0.8038 -2.4422 30 1 5.7735 3.5159 -3.8365 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259819322.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:10 Heat of formation + Delta-G solvation = 3.458768 kcal Electronic energy + Delta-G solvation = -12147.282985 eV Core-core repulsion = 10134.706529 eV Total energy + Delta-G solvation = -2012.576455 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 193.116 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.05797 -35.84541 -35.23077 -32.70683 -30.51560 -28.54887 -26.26155 -25.18714 -22.20910 -21.08270 -19.85723 -18.39891 -16.97984 -16.36242 -15.68777 -15.43887 -14.76997 -14.26772 -13.99637 -13.66446 -13.50247 -13.19101 -12.92927 -12.77337 -12.66343 -12.31034 -12.13536 -11.77914 -11.74253 -11.54931 -11.19010 -10.80194 -8.80643 -8.55709 -8.30685 -6.16957 1.29865 1.40130 1.53346 2.01042 2.28105 2.49562 2.83877 3.27359 4.29588 4.35506 4.45185 4.57998 4.65489 4.70484 4.86484 4.97333 5.07958 5.12059 5.20262 5.29551 5.38259 5.46400 5.48315 5.68420 5.88301 6.01802 6.27291 6.46774 6.86039 7.10485 7.28887 7.51503 8.52875 Molecular weight = 193.12amu Principal moments of inertia in cm(-1) A = 0.028524 B = 0.015688 C = 0.010887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.377582 B = 1784.333854 C = 2571.154361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.108 4.108 3 C -0.010 4.010 4 C -0.307 4.307 5 C -0.192 4.192 6 C -0.117 4.117 7 N -0.459 5.459 8 C 0.112 3.888 9 C 0.206 3.794 10 C -0.501 4.501 11 H 0.075 0.925 12 C 0.042 3.958 13 N -0.855 5.855 14 Si 0.967 3.033 15 H -0.263 1.263 16 H -0.272 1.272 17 H -0.266 1.266 18 H 0.049 0.951 19 H 0.062 0.938 20 H 0.061 0.939 21 H 0.051 0.949 22 H 0.036 0.964 23 H 0.033 0.967 24 H 0.052 0.948 25 H 0.123 0.877 26 H 0.156 0.844 27 H 0.054 0.946 28 H 0.076 0.924 29 H 0.057 0.943 30 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.454 -3.415 1.095 3.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.146 4.146 3 C -0.048 4.048 4 C -0.312 4.312 5 C -0.217 4.217 6 C -0.243 4.243 7 N -0.137 5.137 8 C -0.030 4.030 9 C 0.093 3.907 10 C -0.536 4.536 11 H 0.093 0.907 12 C -0.170 4.170 13 N -0.486 5.486 14 Si 0.790 3.210 15 H -0.187 1.187 16 H -0.198 1.198 17 H -0.191 1.191 18 H 0.068 0.932 19 H 0.081 0.919 20 H 0.080 0.920 21 H 0.070 0.930 22 H 0.055 0.945 23 H 0.052 0.948 24 H 0.070 0.930 25 H 0.141 0.859 26 H 0.173 0.827 27 H 0.073 0.927 28 H 0.094 0.906 29 H 0.076 0.924 30 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.937 -3.305 0.866 3.542 hybrid contribution 0.246 0.180 -0.788 0.845 sum -0.691 -3.124 0.078 3.201 Atomic orbital electron populations 1.21744 0.94585 1.01848 1.01791 1.21406 0.96030 0.96826 1.00324 1.19456 0.90462 0.95878 0.99005 1.19977 0.94843 1.23457 0.92924 1.20456 0.92686 1.11152 0.97449 1.21647 0.98405 1.20493 0.83787 1.44427 1.06320 1.57273 1.05690 1.21552 0.85526 1.01413 0.94528 1.18112 0.81480 0.97374 0.93691 1.18547 1.17017 1.27709 0.90351 0.90711 1.26431 0.92821 0.93290 1.04415 1.69882 1.28591 1.13688 1.36433 0.85374 0.78995 0.79130 0.77519 1.18670 1.19773 1.19072 0.93172 0.91865 0.92034 0.93006 0.94487 0.94801 0.92963 0.85872 0.82708 0.92741 0.90596 0.92382 0.90938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.21 9.91 71.98 0.71 -3.49 16 2 C -0.11 -4.12 5.92 30.59 0.18 -3.94 16 3 C -0.01 -0.44 5.49 29.85 0.16 -0.28 16 4 C -0.31 -15.86 5.50 -19.24 -0.11 -15.97 16 5 C -0.19 -9.22 10.74 22.00 0.24 -8.98 16 6 C -0.12 -5.54 11.42 83.50 0.95 -4.59 16 7 N -0.46 -23.43 3.13 -538.13 -1.68 -25.11 16 8 C 0.11 4.97 9.29 127.77 1.19 6.16 16 9 C 0.21 11.40 6.05 38.95 0.24 11.63 16 10 C -0.50 -27.58 8.68 23.13 0.20 -27.38 16 11 H 0.07 4.11 7.90 -2.91 -0.02 4.09 16 12 C 0.04 2.14 4.10 85.28 0.35 2.49 16 13 N -0.86 -45.22 10.98 21.85 0.24 -44.98 16 14 Si 0.97 39.41 29.60 68.60 2.03 41.44 16 15 H -0.26 -10.61 7.11 99.48 0.71 -9.91 16 16 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 17 H -0.27 -10.29 7.11 99.48 0.71 -9.59 16 18 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 19 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 20 H 0.06 1.63 8.14 -2.38 -0.02 1.61 16 21 H 0.05 1.92 8.14 -2.38 -0.02 1.91 16 22 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 23 H 0.03 1.58 8.08 -2.39 -0.02 1.56 16 24 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 25 H 0.12 5.18 8.06 -2.91 -0.02 5.16 16 26 H 0.16 6.15 8.06 -2.91 -0.02 6.13 16 27 H 0.05 2.48 7.42 -2.39 -0.02 2.46 16 28 H 0.08 2.75 8.14 -2.39 -0.02 2.73 16 29 H 0.06 2.67 6.79 -2.39 -0.02 2.65 16 30 H 0.28 13.61 8.30 -92.70 -0.77 12.84 16 Total: -1.00 -60.63 253.76 5.79 -54.83 By element: Atomic # 1 Polarization: 17.08 SS G_CDS: 1.09 Total: 18.17 kcal Atomic # 6 Polarization: -48.47 SS G_CDS: 4.12 Total: -44.35 kcal Atomic # 7 Polarization: -68.65 SS G_CDS: -1.44 Total: -70.09 kcal Atomic # 14 Polarization: 39.41 SS G_CDS: 2.03 Total: 41.44 kcal Total: -60.63 5.79 -54.83 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259819322.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.292 kcal (2) G-P(sol) polarization free energy of solvation -60.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.833 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds