Wall clock time and date at job start Mon Mar 30 2020 02:51:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35288 * 126.38622 * 2 1 4 4 O 1.33833 * 109.05668 * 179.83468 * 3 2 1 5 5 C 1.35026 * 109.43124 * 0.43717 * 4 3 2 6 6 C 1.41316 * 126.11633 * 179.75125 * 5 4 3 7 7 O 1.21439 * 119.99409 * 179.97438 * 6 5 4 8 8 C 1.50691 * 120.00374 * 359.97438 * 6 5 4 9 9 C 1.50705 * 109.47553 * 179.97438 * 8 6 5 10 10 H 1.07999 * 119.99556 * 0.02562 * 9 8 6 11 11 C 1.37870 * 119.99895 * 180.02562 * 9 8 6 12 12 N 1.31511 * 120.00443 * 359.97438 * 11 9 8 13 13 Si 1.86811 * 119.99564 * 180.02562 * 11 9 8 14 14 H 1.48495 * 109.46992 * 89.99781 * 13 11 9 15 15 H 1.48502 * 109.46978 * 209.99694 * 13 11 9 16 16 H 1.48494 * 109.46863 * 329.99465 * 13 11 9 17 17 C 1.38063 * 107.76343 * 359.73791 * 5 4 3 18 18 H 1.09001 * 109.46953 * 269.68665 * 1 2 3 19 19 H 1.09000 * 109.47318 * 29.68263 * 1 2 3 20 20 H 1.09000 * 109.47161 * 149.68893 * 1 2 3 21 21 H 1.07998 * 125.47075 * 359.97438 * 3 2 1 22 22 H 1.09002 * 109.47333 * 299.99956 * 8 6 5 23 23 H 1.09004 * 109.47085 * 59.99437 * 8 6 5 24 24 H 0.97006 * 119.99774 * 180.02562 * 12 11 9 25 25 H 1.08004 * 126.73977 * 180.02562 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3096 1.0891 0.0000 4 8 3.5872 0.6905 0.0037 5 6 3.6367 -0.6589 -0.0036 6 6 4.8081 -1.4494 -0.0076 7 8 4.7230 -2.6607 -0.0137 8 6 6.1627 -0.7892 -0.0043 9 6 7.2369 -1.8463 -0.0090 10 1 6.9656 -2.8916 -0.0143 11 6 8.5657 -1.4788 -0.0065 12 7 8.8960 -0.2058 -0.0005 13 14 9.8971 -2.7892 -0.0130 14 1 10.2504 -3.1288 -1.4147 15 1 11.1001 -2.2760 0.6902 16 1 9.3991 -4.0042 0.6804 17 6 2.3383 -1.1280 -0.0062 18 1 -0.3633 -0.0056 1.0277 19 1 -0.3634 0.8928 -0.5089 20 1 -0.3633 -0.8872 -0.5187 21 1 1.9733 2.1154 -0.0004 22 1 6.2643 -0.1636 -0.8911 23 1 6.2642 -0.1725 0.8888 24 1 9.8309 0.0527 0.0009 25 1 2.0248 -2.1616 -0.0114 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259845530.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:18 Heat of formation + Delta-G solvation = -33.895052 kcal Electronic energy + Delta-G solvation = -11449.513313 eV Core-core repulsion = 9201.765318 eV Total energy + Delta-G solvation = -2247.747995 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 194.073 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.35162 -38.24355 -34.08071 -32.92274 -30.53570 -29.04215 -27.11947 -24.44317 -21.98278 -20.80425 -18.51637 -16.94496 -16.19961 -16.01279 -15.09319 -14.55243 -13.73660 -13.63885 -13.17702 -13.12982 -12.76517 -12.51860 -12.03642 -11.63575 -11.21343 -10.79608 -10.62448 -10.03541 -9.47120 -9.28897 -8.74506 -8.43349 -8.27594 -6.03933 -4.05242 1.25826 2.47448 3.24040 3.35353 3.40586 3.47305 3.64222 4.45551 4.82484 4.90085 5.03128 5.33553 5.44633 5.56290 5.69655 5.83149 6.04791 6.17997 6.52373 6.62668 7.12296 7.33662 7.36204 7.93964 8.20150 8.53619 9.03701 9.59452 11.08115 Molecular weight = 194.07amu Principal moments of inertia in cm(-1) A = 0.089015 B = 0.007934 C = 0.007324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 314.478586 B = 3528.309559 C = 3822.341522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.204 4.204 3 C -0.018 4.018 4 O -0.143 6.143 5 C -0.080 4.080 6 C 0.423 3.577 7 O -0.447 6.447 8 C -0.020 4.020 9 C -0.518 4.518 10 H 0.074 0.926 11 C 0.057 3.943 12 N -0.898 5.898 13 Si 0.900 3.100 14 H -0.280 1.280 15 H -0.286 1.286 16 H -0.272 1.272 17 C -0.139 4.139 18 H 0.065 0.935 19 H 0.064 0.936 20 H 0.065 0.935 21 H 0.204 0.796 22 H 0.057 0.943 23 H 0.057 0.943 24 H 0.262 0.738 25 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.584 3.310 0.012 13.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.205 4.205 3 C -0.089 4.089 4 O -0.036 6.036 5 C -0.130 4.130 6 C 0.303 3.697 7 O -0.324 6.324 8 C -0.057 4.057 9 C -0.556 4.556 10 H 0.092 0.908 11 C -0.144 4.144 12 N -0.537 5.537 13 Si 0.728 3.272 14 H -0.206 1.206 15 H -0.212 1.212 16 H -0.197 1.197 17 C -0.159 4.159 18 H 0.084 0.916 19 H 0.083 0.917 20 H 0.084 0.916 21 H 0.221 0.779 22 H 0.075 0.925 23 H 0.075 0.925 24 H 0.071 0.929 25 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -13.196 2.969 0.015 13.526 hybrid contribution 0.544 -0.443 -0.009 0.702 sum -12.652 2.527 0.006 12.902 Atomic orbital electron populations 1.20134 0.89058 1.02463 1.01968 1.20424 0.97364 0.92809 1.09891 1.24207 0.80697 0.99845 1.04137 1.84174 1.28147 1.22335 1.68978 1.22723 0.97994 0.80896 1.11413 1.20983 0.89777 0.88025 0.70928 1.90484 1.89124 1.15499 1.37268 1.19564 0.88285 0.97861 0.99983 1.21178 0.90058 0.93610 1.50772 0.90831 1.25009 0.98825 0.95542 0.95057 1.69970 1.17756 1.15231 1.50778 0.86453 0.80828 0.81773 0.78184 1.20568 1.21218 1.19655 1.22329 0.91325 1.00100 1.02100 0.91584 0.91735 0.91575 0.77939 0.92507 0.92500 0.92855 0.82723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.76 10.39 36.01 0.37 -0.39 15 2 C -0.20 -2.79 6.13 -104.96 -0.64 -3.44 15 3 C -0.02 -0.25 11.98 29.68 0.36 0.11 15 4 O -0.14 -2.58 10.47 4.93 0.05 -2.53 15 5 C -0.08 -1.58 6.89 -38.48 -0.26 -1.85 15 6 C 0.42 10.03 6.93 -33.14 -0.23 9.80 15 7 O -0.45 -11.39 15.90 5.42 0.09 -11.30 15 8 C -0.02 -0.54 5.18 -29.04 -0.15 -0.69 15 9 C -0.52 -15.24 8.92 -34.44 -0.31 -15.54 15 10 H 0.07 2.20 6.75 -52.49 -0.35 1.85 15 11 C 0.06 1.65 5.46 -17.82 -0.10 1.55 15 12 N -0.90 -26.86 13.29 55.43 0.74 -26.12 15 13 Si 0.90 22.23 29.54 -169.99 -5.02 17.21 15 14 H -0.28 -6.79 7.11 56.52 0.40 -6.39 15 15 H -0.29 -6.92 7.11 56.52 0.40 -6.51 15 16 H -0.27 -6.66 7.11 56.52 0.40 -6.26 15 17 C -0.14 -2.34 10.56 -38.94 -0.41 -2.75 15 18 H 0.07 0.57 8.14 -51.93 -0.42 0.15 15 19 H 0.06 0.50 8.14 -51.93 -0.42 0.08 15 20 H 0.07 0.60 8.14 -51.93 -0.42 0.18 15 21 H 0.20 1.78 8.06 -52.49 -0.42 1.35 15 22 H 0.06 1.55 8.14 -51.93 -0.42 1.12 15 23 H 0.06 1.55 8.14 -51.93 -0.42 1.12 15 24 H 0.26 7.37 8.31 -40.82 -0.34 7.03 15 25 H 0.16 2.43 8.06 -52.48 -0.42 2.01 15 LS Contribution 234.84 15.07 3.54 3.54 Total: -1.00 -32.24 234.84 -4.43 -36.68 By element: Atomic # 1 Polarization: -1.82 SS G_CDS: -2.45 Total: -4.27 kcal Atomic # 6 Polarization: -11.83 SS G_CDS: -1.38 Total: -13.20 kcal Atomic # 7 Polarization: -26.86 SS G_CDS: 0.74 Total: -26.12 kcal Atomic # 8 Polarization: -13.97 SS G_CDS: 0.14 Total: -13.83 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 3.54 Total: 3.54 kcal Total: -32.24 -4.43 -36.68 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259845530.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.781 kcal (2) G-P(sol) polarization free energy of solvation -32.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds