Wall clock time and date at job start Mon Mar 30 2020 02:33:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30585 * 1 3 3 Si 1.86798 * 120.00070 * 2 1 4 4 H 1.48494 * 109.47319 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47180 * 300.00022 * 3 2 1 6 6 H 1.48499 * 109.47159 * 59.99825 * 3 2 1 7 7 C 1.40299 * 119.99715 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99722 * 180.02562 * 7 2 1 9 9 C 1.41041 * 120.00390 * 0.02562 * 7 2 1 10 10 N 1.33972 * 120.27120 * 334.63159 * 9 7 2 11 11 C 1.31529 * 119.89052 * 180.02562 * 10 9 7 12 12 C 1.39417 * 120.45978 * 0.02562 * 11 10 9 13 13 N 1.31812 * 120.56426 * 359.96194 * 12 11 10 14 14 C 1.32872 * 120.09792 * 0.04041 * 13 12 11 15 15 C 1.47739 * 120.23473 * 180.25246 * 14 13 12 16 16 O 1.21472 * 119.99715 * 173.97696 * 15 14 13 17 17 O 1.34760 * 120.00051 * 353.98287 * 15 14 13 18 18 H 0.97004 * 119.99822 * 0.02562 * 1 2 3 19 19 H 1.08001 * 119.77213 * 179.97438 * 11 10 9 20 20 H 1.08003 * 119.71673 * 180.02562 * 12 11 10 21 21 H 0.96696 * 116.99697 * 179.97438 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3058 0.0000 0.0000 3 14 2.2399 1.6177 0.0000 4 1 3.6998 1.3464 -0.0006 5 1 1.8811 2.3964 -1.2125 6 1 1.8811 2.3964 1.2125 7 6 2.0073 -1.2151 0.0005 8 1 3.0873 -1.2151 0.0010 9 6 1.3021 -2.4365 0.0005 10 7 0.0588 -2.4986 0.4958 11 6 -0.5918 -3.6417 0.4925 12 6 0.0035 -4.7922 -0.0229 13 7 1.2257 -4.7516 -0.5148 14 6 1.9033 -3.6087 -0.5226 15 6 3.2713 -3.5586 -1.0784 16 8 3.8452 -2.4932 -1.1841 17 8 3.8823 -4.6947 -1.4681 18 1 -0.4850 0.8401 -0.0004 19 1 -1.5938 -3.6896 0.8926 20 1 -0.5418 -5.7244 -0.0200 21 1 4.7768 -4.6116 -1.8257 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259867027.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:58 Heat of formation + Delta-G solvation = -75.432077 kcal Electronic energy + Delta-G solvation = -11707.819035 eV Core-core repulsion = 9354.729516 eV Total energy + Delta-G solvation = -2353.089519 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 194.048 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.37588 -40.10241 -36.91771 -35.99579 -34.19601 -32.31918 -28.40574 -26.11784 -24.13501 -22.56621 -19.73454 -19.06732 -18.02400 -17.73397 -16.87109 -16.44105 -16.05724 -15.10580 -14.74843 -14.44635 -13.65721 -13.35609 -13.07921 -13.02878 -12.32095 -12.05792 -11.87801 -11.68945 -11.20315 -10.99793 -9.89311 -9.53322 -8.74224 -6.83477 0.03796 0.82979 1.34931 1.45912 1.53151 1.89153 2.14334 2.41597 2.63958 3.61270 3.91483 4.06736 4.34604 4.68327 4.88395 4.98271 5.15920 5.61003 5.76657 6.15275 6.29042 6.53631 6.99541 7.38354 7.64982 8.07909 Molecular weight = 194.05amu Principal moments of inertia in cm(-1) A = 0.035899 B = 0.016868 C = 0.011645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.783963 B = 1659.558040 C = 2403.958234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.743 5.743 2 C 0.022 3.978 3 Si 0.997 3.003 4 H -0.260 1.260 5 H -0.258 1.258 6 H -0.252 1.252 7 C -0.399 4.399 8 H 0.114 0.886 9 C 0.204 3.796 10 N -0.476 5.476 11 C 0.106 3.894 12 C -0.093 4.093 13 N -0.389 5.389 14 C -0.154 4.154 15 C 0.546 3.454 16 O -0.544 6.544 17 O -0.507 6.507 18 H 0.297 0.703 19 H 0.184 0.816 20 H 0.183 0.817 21 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.847 -0.917 0.039 1.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.363 5.363 2 C -0.202 4.202 3 Si 0.815 3.185 4 H -0.183 1.183 5 H -0.182 1.182 6 H -0.176 1.176 7 C -0.426 4.426 8 H 0.132 0.868 9 C 0.083 3.917 10 N -0.192 5.192 11 C -0.071 4.071 12 C -0.263 4.263 13 N -0.105 5.105 14 C -0.292 4.292 15 C 0.394 3.606 16 O -0.436 6.436 17 O -0.319 6.319 18 H 0.108 0.892 19 H 0.200 0.800 20 H 0.200 0.800 21 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges 0.587 -0.412 0.112 0.726 hybrid contribution 0.660 0.417 -0.292 0.834 sum 1.247 0.005 -0.181 1.260 Atomic orbital electron populations 1.69872 1.09226 1.31466 1.25726 1.27309 0.95872 1.05252 0.91805 0.84939 0.79207 0.74636 0.79740 1.18320 1.18183 1.17560 1.20845 0.96844 0.89702 1.35212 0.86799 1.19312 0.89603 0.93041 0.89771 1.69396 1.07489 1.25494 1.16858 1.24488 1.00562 0.89276 0.92801 1.23567 0.93245 1.00814 1.08635 1.67672 1.07805 1.26473 1.08520 1.20384 0.96242 0.93524 1.19022 1.20283 0.85460 0.80775 0.74111 1.90712 1.66403 1.31307 1.55136 1.84675 1.35587 1.35890 1.75770 0.89165 0.79951 0.79986 0.72277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -37.69 11.84 21.88 0.26 -37.43 14 2 C 0.02 1.11 5.47 85.38 0.47 1.58 14 3 Si 1.00 37.64 29.56 68.60 2.03 39.67 14 4 H -0.26 -10.03 7.11 99.48 0.71 -9.32 14 5 H -0.26 -9.18 7.11 99.48 0.71 -8.47 14 6 H -0.25 -8.73 7.11 99.48 0.71 -8.03 14 7 C -0.40 -22.03 8.09 23.46 0.19 -21.84 14 8 H 0.11 6.38 5.40 -2.91 -0.02 6.36 14 9 C 0.20 11.47 6.39 40.37 0.26 11.73 14 10 N -0.48 -25.16 8.53 -187.67 -1.60 -26.76 14 11 C 0.11 4.58 11.23 85.02 0.95 5.54 14 12 C -0.09 -3.88 11.23 84.98 0.95 -2.92 14 13 N -0.39 -19.02 10.27 -182.43 -1.87 -20.89 14 14 C -0.15 -8.18 6.81 42.37 0.29 -7.89 14 15 C 0.55 26.74 8.28 70.33 0.58 27.32 14 16 O -0.54 -28.06 14.23 19.92 0.28 -27.78 14 17 O -0.51 -19.88 13.27 -56.70 -0.75 -20.63 14 18 H 0.30 13.19 8.29 -92.71 -0.77 12.43 14 19 H 0.18 6.05 8.06 -2.91 -0.02 6.03 14 20 H 0.18 5.83 8.06 -2.91 -0.02 5.80 14 21 H 0.42 11.05 9.11 -74.06 -0.67 10.37 14 Total: -1.00 -67.80 205.42 2.65 -65.15 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: 0.61 Total: 15.17 kcal Atomic # 6 Polarization: 9.82 SS G_CDS: 3.69 Total: 13.51 kcal Atomic # 7 Polarization: -81.87 SS G_CDS: -3.21 Total: -85.08 kcal Atomic # 8 Polarization: -47.94 SS G_CDS: -0.47 Total: -48.41 kcal Atomic # 14 Polarization: 37.64 SS G_CDS: 2.03 Total: 39.67 kcal Total: -67.80 2.65 -65.15 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259867027.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.283 kcal (2) G-P(sol) polarization free energy of solvation -67.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds