Wall clock time and date at job start Mon Mar 30 2020 02:47:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86807 * 119.99717 * 2 1 4 4 H 1.48500 * 109.47229 * 264.84586 * 3 2 1 5 5 H 1.48503 * 109.47216 * 24.84588 * 3 2 1 6 6 H 1.48502 * 109.46804 * 144.84652 * 3 2 1 7 7 C 1.37874 * 120.00336 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99902 * 5.40468 * 7 2 1 9 9 C 1.50700 * 120.00050 * 185.40283 * 7 2 1 10 10 H 1.08999 * 110.86703 * 38.64493 * 9 7 2 11 11 C 1.54460 * 110.93840 * 162.41365 * 9 7 2 12 12 C 1.51442 * 104.99264 * 143.73133 * 11 9 7 13 13 O 1.34746 * 141.55188 * 163.13613 * 12 11 9 14 14 C 1.34193 * 109.54824 * 179.97438 * 13 12 11 15 15 C 1.34447 * 108.42809 * 0.26900 * 14 13 12 16 16 C 1.34293 * 110.25197 * 343.08323 * 12 11 9 17 17 C 1.51200 * 110.57970 * 0.04605 * 16 12 11 18 18 H 1.09003 * 110.34970 * 135.69321 * 17 16 12 19 19 O 1.42895 * 110.34985 * 257.86408 * 17 16 12 20 20 H 0.97000 * 120.00463 * 0.02562 * 1 2 3 21 21 H 1.08994 * 110.36035 * 24.83992 * 11 9 7 22 22 H 1.09001 * 110.32106 * 262.59502 * 11 9 7 23 23 H 1.07995 * 125.78149 * 180.02562 * 14 13 12 24 24 H 1.07994 * 126.59796 * 179.71635 * 15 14 13 25 25 H 0.96700 * 113.99847 * 298.54846 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6055 1.9837 -1.3944 5 1 1.3963 2.6818 0.5883 6 1 3.4880 1.4741 0.8061 7 6 2.0046 -1.1940 0.0005 8 1 1.4683 -2.1272 -0.0871 9 6 3.5066 -1.1968 0.1234 10 1 3.8401 -0.4325 0.8254 11 6 4.0239 -2.5918 0.5382 12 6 5.3304 -2.7630 -0.2083 13 8 6.4532 -3.5080 -0.2131 14 6 7.2543 -3.1061 -1.2118 15 6 6.6532 -2.0909 -1.8566 16 6 5.4115 -1.8757 -1.2130 17 6 4.1740 -1.0080 -1.2569 18 1 4.4484 0.0363 -1.4057 19 8 3.2982 -1.4439 -2.2985 20 1 -0.4851 0.8400 -0.0004 21 1 3.3138 -3.3634 0.2410 22 1 4.1950 -2.6275 1.6142 23 1 8.2201 -3.5243 -1.4538 24 1 7.0420 -1.5464 -2.7043 25 1 3.6832 -1.3911 -3.1840 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259881220.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:42 Heat of formation + Delta-G solvation = -13.177484 kcal Electronic energy + Delta-G solvation = -12138.610660 eV Core-core repulsion = 9891.761046 eV Total energy + Delta-G solvation = -2246.849614 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 194.073 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.23957 -37.46189 -33.82238 -32.51592 -31.59486 -28.26293 -26.06427 -24.34633 -20.87763 -19.64556 -19.43930 -17.45793 -16.47000 -15.83868 -15.53455 -14.38170 -13.96846 -13.60283 -12.89468 -12.55903 -12.43065 -12.14932 -11.50213 -11.16831 -10.86615 -10.24361 -10.07587 -9.78717 -9.36844 -9.27107 -9.07580 -8.49366 -7.85371 -6.05361 -4.02375 2.15787 2.99419 3.07921 3.29937 3.35277 3.37337 4.42324 4.87044 5.27954 5.33494 5.40889 5.50361 5.83490 5.92894 6.03309 6.32285 6.37295 6.52496 6.76949 6.77391 6.95396 7.11274 7.62844 7.64236 8.44552 8.67504 9.00204 9.55649 11.07865 Molecular weight = 194.07amu Principal moments of inertia in cm(-1) A = 0.059533 B = 0.012461 C = 0.011872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 470.212205 B = 2246.483667 C = 2357.986526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.078 3.922 3 Si 0.870 3.130 4 H -0.275 1.275 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.481 4.481 8 H 0.079 0.921 9 C 0.024 3.976 10 H 0.062 0.938 11 C -0.015 4.015 12 C -0.016 4.016 13 O -0.171 6.171 14 C -0.063 4.063 15 C -0.187 4.187 16 C -0.250 4.250 17 C 0.162 3.838 18 H 0.038 0.962 19 O -0.520 6.520 20 H 0.264 0.736 21 H 0.092 0.908 22 H 0.071 0.929 23 H 0.199 0.801 24 H 0.140 0.860 25 H 0.350 0.650 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.037 -2.389 -2.180 12.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.124 4.124 3 Si 0.697 3.303 4 H -0.201 1.201 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.519 4.519 8 H 0.097 0.903 9 C 0.005 3.995 10 H 0.080 0.920 11 C -0.052 4.052 12 C -0.067 4.067 13 O -0.068 6.068 14 C -0.130 4.130 15 C -0.207 4.207 16 C -0.251 4.251 17 C 0.103 3.897 18 H 0.055 0.945 19 O -0.321 6.321 20 H 0.074 0.926 21 H 0.110 0.890 22 H 0.090 0.910 23 H 0.216 0.784 24 H 0.158 0.842 25 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 11.494 -2.590 -1.446 11.871 hybrid contribution 1.177 1.124 -0.946 1.883 sum 12.671 -1.466 -2.393 12.978 Atomic orbital electron populations 1.69879 1.06177 1.26900 1.50503 1.24907 0.94619 0.98660 0.94249 0.87026 0.80249 0.84176 0.78816 1.20073 1.21409 1.19023 1.20572 0.87128 0.94982 1.49175 0.90298 1.20167 0.97710 0.91808 0.89781 0.92029 1.21108 0.85172 1.01079 0.97811 1.23915 0.89316 0.92379 1.01050 1.83826 1.25582 1.51656 1.45703 1.23834 0.97510 1.00114 0.91559 1.21215 0.95423 1.00846 1.03170 1.22365 0.98180 1.04347 1.00239 1.21199 0.83257 0.92429 0.92861 0.94453 1.86922 1.40860 1.88582 1.15731 0.92607 0.89026 0.91025 0.78393 0.84205 0.80732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.30 13.96 55.43 0.77 -26.52 15 2 C 0.08 2.22 5.47 -17.82 -0.10 2.13 15 3 Si 0.87 21.36 26.41 -169.99 -4.49 16.87 15 4 H -0.27 -6.71 7.11 56.52 0.40 -6.31 15 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 15 6 H -0.27 -6.15 6.20 56.52 0.35 -5.80 15 7 C -0.48 -13.40 7.98 -34.44 -0.27 -13.68 15 8 H 0.08 2.40 7.82 -52.49 -0.41 1.99 15 9 C 0.02 0.57 2.43 -90.23 -0.22 0.36 15 10 H 0.06 1.44 6.07 -51.93 -0.32 1.13 15 11 C -0.01 -0.30 6.34 -26.75 -0.17 -0.47 15 12 C -0.02 -0.32 8.21 -35.34 -0.29 -0.61 15 13 O -0.17 -3.09 10.66 4.78 0.05 -3.04 15 14 C -0.06 -0.94 12.08 29.39 0.36 -0.59 15 15 C -0.19 -3.07 10.92 -39.68 -0.43 -3.50 15 16 C -0.25 -4.99 6.62 -104.52 -0.69 -5.68 15 17 C 0.16 3.60 3.48 -26.86 -0.09 3.51 15 18 H 0.04 0.82 7.32 -51.93 -0.38 0.44 15 19 O -0.52 -11.83 12.23 -35.23 -0.43 -12.26 15 20 H 0.26 7.54 8.31 -40.82 -0.34 7.20 15 21 H 0.09 1.93 7.73 -51.93 -0.40 1.53 15 22 H 0.07 1.31 8.14 -51.93 -0.42 0.89 15 23 H 0.20 1.96 8.06 -52.49 -0.42 1.53 15 24 H 0.14 1.89 8.06 -52.49 -0.42 1.47 15 25 H 0.35 6.16 9.10 45.56 0.41 6.58 15 LS Contribution 217.81 15.07 3.28 3.28 Total: -1.00 -31.91 217.81 -4.28 -36.18 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: -1.55 Total: 4.04 kcal Atomic # 6 Polarization: -16.63 SS G_CDS: -1.91 Total: -18.55 kcal Atomic # 7 Polarization: -27.30 SS G_CDS: 0.77 Total: -26.52 kcal Atomic # 8 Polarization: -14.92 SS G_CDS: -0.38 Total: -15.30 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.49 Total: 16.87 kcal Total LS contribution 3.28 Total: 3.28 kcal Total: -31.91 -4.28 -36.18 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259881220.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.007 kcal (2) G-P(sol) polarization free energy of solvation -31.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds