Wall clock time and date at job start Mon Mar 30 2020 02:47:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86807 * 119.99717 * 2 1 4 4 H 1.48500 * 109.47229 * 264.84586 * 3 2 1 5 5 H 1.48503 * 109.47216 * 24.84588 * 3 2 1 6 6 H 1.48502 * 109.46804 * 144.84652 * 3 2 1 7 7 C 1.37874 * 120.00336 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99902 * 5.40468 * 7 2 1 9 9 C 1.50700 * 120.00050 * 185.40283 * 7 2 1 10 10 H 1.08999 * 110.86703 * 38.64493 * 9 7 2 11 11 C 1.54460 * 110.93840 * 162.41365 * 9 7 2 12 12 C 1.51442 * 104.99264 * 143.73133 * 11 9 7 13 13 O 1.34746 * 141.55188 * 163.13613 * 12 11 9 14 14 C 1.34193 * 109.54824 * 179.97438 * 13 12 11 15 15 C 1.34447 * 108.42809 * 0.26900 * 14 13 12 16 16 C 1.34293 * 110.25197 * 343.08323 * 12 11 9 17 17 C 1.51200 * 110.57970 * 0.04605 * 16 12 11 18 18 H 1.09003 * 110.34970 * 135.69321 * 17 16 12 19 19 O 1.42895 * 110.34985 * 257.86408 * 17 16 12 20 20 H 0.97000 * 120.00463 * 0.02562 * 1 2 3 21 21 H 1.08994 * 110.36035 * 24.83992 * 11 9 7 22 22 H 1.09001 * 110.32106 * 262.59502 * 11 9 7 23 23 H 1.07995 * 125.78149 * 180.02562 * 14 13 12 24 24 H 1.07994 * 126.59796 * 179.71635 * 15 14 13 25 25 H 0.96700 * 113.99847 * 298.54846 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6055 1.9837 -1.3944 5 1 1.3963 2.6818 0.5883 6 1 3.4880 1.4741 0.8061 7 6 2.0046 -1.1940 0.0005 8 1 1.4683 -2.1272 -0.0871 9 6 3.5066 -1.1968 0.1234 10 1 3.8401 -0.4325 0.8254 11 6 4.0239 -2.5918 0.5382 12 6 5.3304 -2.7630 -0.2083 13 8 6.4532 -3.5080 -0.2131 14 6 7.2543 -3.1061 -1.2118 15 6 6.6532 -2.0909 -1.8566 16 6 5.4115 -1.8757 -1.2130 17 6 4.1740 -1.0080 -1.2569 18 1 4.4484 0.0363 -1.4057 19 8 3.2982 -1.4439 -2.2985 20 1 -0.4851 0.8400 -0.0004 21 1 3.3138 -3.3634 0.2410 22 1 4.1950 -2.6275 1.6142 23 1 8.2201 -3.5243 -1.4538 24 1 7.0420 -1.5464 -2.7043 25 1 3.6832 -1.3911 -3.1840 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259881220.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:41 Heat of formation + Delta-G solvation = -37.427925 kcal Electronic energy + Delta-G solvation = -12139.662238 eV Core-core repulsion = 9891.761046 eV Total energy + Delta-G solvation = -2247.901192 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 194.073 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -43.61840 -39.14658 -35.60418 -34.47257 -33.09751 -29.99520 -27.68077 -26.19885 -22.32517 -21.36065 -20.91009 -19.39602 -18.03665 -17.51986 -16.97156 -16.32973 -15.51041 -15.27312 -14.64988 -14.45492 -13.93211 -13.61855 -13.29538 -12.84497 -12.65899 -11.99860 -11.98243 -11.68775 -11.33487 -10.90131 -10.70117 -10.57547 -9.25303 -8.24627 -6.26336 0.81430 1.35048 1.37166 1.44739 1.63644 1.71943 2.36557 3.06821 3.62526 3.73016 3.98664 4.05264 4.23337 4.40054 4.63962 4.73805 4.81167 5.05077 5.14730 5.18149 5.33307 5.57529 5.64531 6.23883 6.32036 6.72446 7.12540 7.35343 8.92564 Molecular weight = 194.07amu Principal moments of inertia in cm(-1) A = 0.059533 B = 0.012461 C = 0.011872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 470.212205 B = 2246.483667 C = 2357.986526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.018 3.982 3 Si 0.933 3.067 4 H -0.269 1.269 5 H -0.285 1.285 6 H -0.240 1.240 7 C -0.481 4.481 8 H 0.034 0.966 9 C 0.015 3.985 10 H 0.068 0.932 11 C -0.012 4.012 12 C -0.042 4.042 13 O -0.177 6.177 14 C -0.036 4.036 15 C -0.202 4.202 16 C -0.258 4.258 17 C 0.163 3.837 18 H 0.042 0.958 19 O -0.548 6.548 20 H 0.265 0.735 21 H 0.074 0.926 22 H 0.090 0.910 23 H 0.254 0.746 24 H 0.170 0.830 25 H 0.371 0.629 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.333 -1.977 -2.727 15.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.179 4.179 3 Si 0.757 3.243 4 H -0.195 1.195 5 H -0.211 1.211 6 H -0.164 1.164 7 C -0.518 4.518 8 H 0.052 0.948 9 C -0.004 4.004 10 H 0.085 0.915 11 C -0.049 4.049 12 C -0.092 4.092 13 O -0.074 6.074 14 C -0.101 4.101 15 C -0.221 4.221 16 C -0.259 4.259 17 C 0.104 3.896 18 H 0.060 0.940 19 O -0.352 6.352 20 H 0.074 0.926 21 H 0.092 0.908 22 H 0.108 0.892 23 H 0.270 0.730 24 H 0.188 0.812 25 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 14.819 -2.193 -2.001 15.114 hybrid contribution 0.198 0.863 -0.830 1.214 sum 15.018 -1.330 -2.831 15.340 Atomic orbital electron populations 1.70034 1.08154 1.27947 1.52759 1.25760 0.95364 1.02650 0.94092 0.85998 0.79745 0.79187 0.79395 1.19468 1.21103 1.16398 1.20699 0.89578 0.93261 1.48308 0.94808 1.20120 0.94954 0.93820 0.91512 0.91453 1.20808 0.85974 0.98901 0.99194 1.23518 0.90063 0.93882 1.01728 1.83838 1.25146 1.51490 1.46926 1.24940 0.97986 0.98341 0.88873 1.21560 0.94013 1.02017 1.04465 1.22352 0.98777 1.03824 1.00992 1.20964 0.84036 0.93239 0.91371 0.93984 1.86863 1.42241 1.88775 1.17368 0.92553 0.90759 0.89168 0.72974 0.81219 0.78309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.77 13.96 21.45 0.30 -59.48 15 2 C 0.02 1.08 5.47 84.65 0.46 1.54 15 3 Si 0.93 43.91 26.41 68.60 1.81 45.73 15 4 H -0.27 -12.37 7.11 99.48 0.71 -11.66 15 5 H -0.29 -13.19 7.11 99.48 0.71 -12.49 15 6 H -0.24 -10.25 6.20 99.48 0.62 -9.63 15 7 C -0.48 -27.66 7.98 25.60 0.20 -27.46 15 8 H 0.03 2.18 7.82 -2.91 -0.02 2.16 15 9 C 0.01 0.70 2.43 -10.54 -0.03 0.67 15 10 H 0.07 3.07 6.07 -2.39 -0.01 3.06 15 11 C -0.01 -0.48 6.34 30.58 0.19 -0.29 15 12 C -0.04 -1.59 8.21 25.02 0.21 -1.39 15 13 O -0.18 -5.82 10.66 -5.81 -0.06 -5.88 15 14 C -0.04 -0.87 12.08 66.95 0.81 -0.06 15 15 C -0.20 -5.74 10.92 22.21 0.24 -5.49 15 16 C -0.26 -9.69 6.62 -19.80 -0.13 -9.82 15 17 C 0.16 7.05 3.48 30.51 0.11 7.16 15 18 H 0.04 1.76 7.32 -2.39 -0.02 1.74 15 19 O -0.55 -24.83 12.23 -148.98 -1.82 -26.65 15 20 H 0.27 15.65 8.31 -92.71 -0.77 14.88 15 21 H 0.07 3.27 7.73 -2.39 -0.02 3.25 15 22 H 0.09 3.28 8.14 -2.39 -0.02 3.26 15 23 H 0.25 3.18 8.06 -2.91 -0.02 3.15 15 24 H 0.17 3.71 8.06 -2.91 -0.02 3.69 15 25 H 0.37 12.70 9.10 -74.06 -0.67 12.03 15 Total: -1.00 -70.75 217.81 2.74 -68.01 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: 0.45 Total: 13.42 kcal Atomic # 6 Polarization: -37.21 SS G_CDS: 2.07 Total: -35.14 kcal Atomic # 7 Polarization: -59.77 SS G_CDS: 0.30 Total: -59.48 kcal Atomic # 8 Polarization: -30.65 SS G_CDS: -1.88 Total: -32.54 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 1.81 Total: 45.73 kcal Total: -70.75 2.74 -68.01 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259881220.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.580 kcal (2) G-P(sol) polarization free energy of solvation -70.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds