Wall clock time and date at job start Mon Mar 30 2020 02:29:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30906 * 1 3 3 Si 1.86807 * 119.99580 * 2 1 4 4 H 1.48502 * 109.46964 * 0.02562 * 3 2 1 5 5 H 1.48500 * 109.46762 * 119.99896 * 3 2 1 6 6 H 1.48496 * 109.46851 * 240.00049 * 3 2 1 7 7 C 1.40009 * 120.00218 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00049 * 354.75954 * 7 2 1 9 9 C 1.39974 * 119.99988 * 174.75837 * 7 2 1 10 10 C 1.37091 * 124.91550 * 190.33368 * 9 7 2 11 11 C 1.39633 * 114.74752 * 179.78851 * 10 9 7 12 12 C 1.47418 * 140.75361 * 180.08808 * 11 10 9 13 13 N 1.29983 * 107.63099 * 180.38849 * 12 11 10 14 14 N 1.39583 * 109.83000 * 359.97438 * 13 12 11 15 15 H 0.97001 * 125.42506 * 180.02562 * 14 13 12 16 16 C 1.36596 * 109.15992 * 359.97438 * 14 13 12 17 17 S 1.75555 * 124.91344 * 10.63716 * 9 7 2 18 18 H 0.97001 * 119.99532 * 179.81142 * 1 2 3 19 19 H 1.07998 * 122.62309 * 0.02562 * 10 9 7 20 20 H 1.07997 * 126.18210 * 0.36812 * 12 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2430 1.6179 0.0000 4 1 1.2778 2.7465 0.0006 5 1 3.0967 1.6965 1.2125 6 1 3.0967 1.6965 -1.2125 7 6 2.0091 -1.2125 0.0005 8 1 1.4726 -2.1458 0.0864 9 6 3.4045 -1.2150 -0.1102 10 6 4.1728 -2.3305 -0.3221 11 6 5.5456 -2.0880 -0.4026 12 6 6.8207 -2.7999 -0.6038 13 7 7.7753 -1.9190 -0.5552 14 7 7.2377 -0.6499 -0.3344 15 1 7.7479 0.1717 -0.2595 16 6 5.8784 -0.7487 -0.2418 17 16 4.4245 0.2088 0.0097 18 1 -0.4849 -0.8401 -0.0028 19 1 3.7491 -3.3187 -0.4228 20 1 6.9402 -3.8614 -0.7625 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259918568.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:22 Heat of formation + Delta-G solvation = 50.464943 kcal Electronic energy + Delta-G solvation = -9601.203521 eV Core-core repulsion = 7696.326177 eV Total energy + Delta-G solvation = -1904.877343 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 194.021 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.38016 -36.88149 -34.94955 -32.00102 -30.65187 -26.32908 -23.62150 -22.12831 -20.82914 -20.15006 -19.08682 -16.73745 -16.06202 -15.64373 -15.60182 -14.81321 -14.53759 -13.95286 -13.68416 -12.97067 -12.32020 -11.99776 -11.91994 -11.62169 -11.47896 -10.71891 -10.68068 -9.49355 -9.24439 -8.55305 -6.44187 0.30241 0.67335 1.06894 1.20269 1.35501 1.48730 1.66401 2.18258 2.29303 2.43881 3.04767 4.08813 4.13593 4.58595 5.15399 5.34131 5.47249 5.61210 5.78221 6.08454 6.25798 6.46581 6.64792 6.83686 7.89986 Molecular weight = 194.02amu Principal moments of inertia in cm(-1) A = 0.071578 B = 0.014381 C = 0.012053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 391.089712 B = 1946.542152 C = 2322.426445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.018 3.982 3 Si 0.926 3.074 4 H -0.199 1.199 5 H -0.180 1.180 6 H -0.182 1.182 7 C -0.492 4.492 8 H 0.065 0.935 9 C 0.014 3.986 10 C -0.318 4.318 11 C -0.158 4.158 12 C 0.055 3.945 13 N -0.282 5.282 14 N -0.465 5.465 15 H 0.444 0.556 16 C -0.096 4.096 17 S 0.079 5.921 18 H 0.281 0.719 19 H 0.106 0.894 20 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.505 3.341 -0.121 8.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C -0.198 4.198 3 Si 0.744 3.256 4 H -0.121 1.121 5 H -0.107 1.107 6 H -0.107 1.107 7 C -0.527 4.527 8 H 0.083 0.917 9 C -0.104 4.104 10 C -0.345 4.345 11 C -0.174 4.174 12 C -0.139 4.139 13 N -0.101 5.101 14 N -0.184 5.184 15 H 0.289 0.711 16 C -0.325 4.325 17 S 0.324 5.676 18 H 0.092 0.908 19 H 0.124 0.876 20 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 8.194 6.525 0.022 10.475 hybrid contribution -0.777 -3.432 -0.101 3.521 sum 7.417 3.093 -0.080 8.037 Atomic orbital electron populations 1.70645 1.08130 1.32381 1.34444 1.28276 0.96093 1.05888 0.89567 0.84528 0.80228 0.74996 0.85831 1.12068 1.10668 1.10731 1.20026 0.90695 0.96305 1.45712 0.91705 1.21298 0.96137 0.93301 0.99665 1.19021 0.90500 0.97805 1.27216 1.20144 0.94461 0.92041 1.10768 1.25260 0.86961 1.00153 1.01516 1.76193 1.23267 0.89143 1.21523 1.45000 1.01051 1.07774 1.64623 0.71078 1.24739 0.90875 1.00530 1.16405 1.84202 0.93250 1.09521 1.80607 0.90811 0.87616 0.76625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.60 13.66 21.85 0.30 -43.30 14 2 C 0.02 0.90 5.52 85.26 0.47 1.37 14 3 Si 0.93 36.22 24.49 68.60 1.68 37.90 14 4 H -0.20 -7.12 7.11 99.48 0.71 -6.41 14 5 H -0.18 -6.44 6.31 97.17 0.61 -5.83 14 6 H -0.18 -6.66 6.34 97.71 0.62 -6.04 14 7 C -0.49 -26.51 9.70 23.12 0.22 -26.29 14 8 H 0.06 3.71 8.06 -2.91 -0.02 3.68 14 9 C 0.01 0.69 5.96 22.42 0.13 0.82 14 10 C -0.32 -15.85 10.20 22.34 0.23 -15.62 14 11 C -0.16 -7.16 6.79 -20.35 -0.14 -7.29 14 12 C 0.06 2.07 12.34 87.39 1.08 3.15 14 13 N -0.28 -10.45 12.54 -52.10 -0.65 -11.11 14 14 N -0.47 -17.04 7.33 -52.60 -0.39 -17.43 14 15 H 0.44 12.74 8.96 -213.65 -1.92 10.82 14 16 C -0.10 -4.13 8.48 84.12 0.71 -3.41 14 17 S 0.08 3.38 15.32 -56.49 -0.87 2.51 14 18 H 0.28 14.64 8.72 -92.71 -0.81 13.83 14 19 H 0.11 5.19 8.06 -2.91 -0.02 5.16 14 20 H 0.22 6.15 8.06 -2.91 -0.02 6.13 14 Total: -1.00 -59.28 193.96 1.93 -57.35 By element: Atomic # 1 Polarization: 22.20 SS G_CDS: -0.85 Total: 21.35 kcal Atomic # 6 Polarization: -49.98 SS G_CDS: 2.71 Total: -47.27 kcal Atomic # 7 Polarization: -71.10 SS G_CDS: -0.74 Total: -71.84 kcal Atomic # 14 Polarization: 36.22 SS G_CDS: 1.68 Total: 37.90 kcal Atomic # 16 Polarization: 3.38 SS G_CDS: -0.87 Total: 2.51 kcal Total: -59.28 1.93 -57.35 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259918568.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.816 kcal (2) G-P(sol) polarization free energy of solvation -59.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds