Wall clock time and date at job start Mon Mar 30 2020 02:33:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30576 * 1 3 3 Si 1.86802 * 119.99917 * 2 1 4 4 H 1.48501 * 109.47585 * 270.00385 * 3 2 1 5 5 H 1.48505 * 109.46936 * 30.00864 * 3 2 1 6 6 H 1.48501 * 109.46824 * 150.00327 * 3 2 1 7 7 C 1.40358 * 120.00418 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00217 * 197.22545 * 7 2 1 9 9 C 1.40954 * 119.99603 * 17.21755 * 7 2 1 10 10 C 1.41414 * 120.98713 * 203.27808 * 9 7 2 11 11 N 1.31588 * 118.84813 * 180.02562 * 10 9 7 12 12 C 1.32859 * 121.03497 * 359.97438 * 11 10 9 13 13 C 1.48058 * 118.89549 * 179.97438 * 12 11 10 14 14 O 1.21444 * 119.99413 * 359.73118 * 13 12 11 15 15 O 1.34724 * 120.00116 * 179.97438 * 13 12 11 16 16 N 1.32855 * 122.21261 * 0.25831 * 12 11 10 17 17 C 1.31597 * 121.02678 * 359.47526 * 16 12 11 18 18 H 0.97005 * 120.00187 * 359.97438 * 1 2 3 19 19 H 1.08002 * 120.57184 * 359.97438 * 10 9 7 20 20 H 0.96699 * 117.00537 * 179.72390 * 15 13 12 21 21 H 1.08003 * 120.57258 * 180.25492 * 17 16 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3058 0.0000 0.0000 3 14 2.2397 1.6178 0.0000 4 1 2.4872 2.0466 -1.4000 5 1 1.4372 2.6526 0.7002 6 1 3.5373 1.4401 0.7000 7 6 2.0076 -1.2155 -0.0005 8 1 3.0512 -1.2365 0.2764 9 6 1.3502 -2.4087 -0.3624 10 6 1.8307 -3.6655 0.0728 11 7 1.1845 -4.7527 -0.2904 12 6 0.0983 -4.6816 -1.0522 13 6 -0.5916 -5.9350 -1.4332 14 8 -0.1599 -7.0050 -1.0541 15 8 -1.6952 -5.8888 -2.2045 16 7 -0.3865 -3.5240 -1.4880 17 6 0.1904 -2.3845 -1.1711 18 1 -0.4851 0.8401 0.0004 19 1 2.7132 -3.7318 0.6919 20 1 -2.1086 -6.7333 -2.4306 21 1 -0.2123 -1.4474 -1.5261 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259918577.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:40 Heat of formation + Delta-G solvation = -83.289897 kcal Electronic energy + Delta-G solvation = -11361.267460 eV Core-core repulsion = 9007.837200 eV Total energy + Delta-G solvation = -2353.430260 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 194.048 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.39751 -40.27503 -36.95721 -36.42262 -34.07447 -32.69157 -28.73074 -25.43712 -24.66145 -22.72815 -19.68078 -19.29901 -18.46175 -17.79102 -16.93315 -16.68224 -15.60786 -15.28132 -14.81582 -14.10986 -13.99219 -13.73352 -13.29559 -12.92943 -12.49276 -12.22043 -11.83430 -11.45224 -11.42150 -11.29533 -10.22643 -9.72646 -9.07706 -6.81813 -0.00913 0.85891 1.32421 1.42939 1.61355 1.72592 2.07368 2.12052 2.56581 3.52484 3.79972 4.18999 4.32856 4.76040 4.79322 4.84625 5.40514 5.54264 5.62746 6.01819 6.17682 6.27354 6.75716 7.11269 7.69804 7.84792 Molecular weight = 194.05amu Principal moments of inertia in cm(-1) A = 0.086704 B = 0.009408 C = 0.008656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 322.861357 B = 2975.619134 C = 3233.792194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.029 3.971 3 Si 1.008 2.992 4 H -0.257 1.257 5 H -0.264 1.264 6 H -0.245 1.245 7 C -0.378 4.378 8 H 0.122 0.878 9 C -0.004 4.004 10 C 0.000 4.000 11 N -0.455 5.455 12 C 0.030 3.970 13 C 0.570 3.430 14 O -0.553 6.553 15 O -0.496 6.496 16 N -0.461 5.461 17 C 0.044 3.956 18 H 0.313 0.687 19 H 0.173 0.827 20 H 0.425 0.575 21 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.520 5.394 -0.897 5.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.388 5.388 2 C -0.195 4.195 3 Si 0.825 3.175 4 H -0.181 1.181 5 H -0.188 1.188 6 H -0.168 1.168 7 C -0.405 4.405 8 H 0.140 0.860 9 C -0.012 4.012 10 C -0.175 4.175 11 N -0.169 5.169 12 C -0.219 4.219 13 C 0.416 3.584 14 O -0.445 6.445 15 O -0.307 6.307 16 N -0.176 5.176 17 C -0.134 4.134 18 H 0.125 0.875 19 H 0.190 0.810 20 H 0.286 0.714 21 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 0.973 4.506 -1.014 4.720 hybrid contribution 0.141 0.608 0.152 0.643 sum 1.114 5.115 -0.862 5.305 Atomic orbital electron populations 1.69640 1.10023 1.33718 1.25453 1.27422 0.95649 1.06019 0.90445 0.84771 0.79166 0.73281 0.80241 1.18102 1.18788 1.16767 1.20543 0.99366 0.90369 1.30230 0.86013 1.19750 0.94350 0.95649 0.91462 1.23328 1.02883 0.86924 1.04410 1.67239 1.05833 1.34933 1.08891 1.20035 0.99277 0.89988 1.12620 1.19679 0.77683 0.86709 0.74309 1.90738 1.66795 1.31491 1.55465 1.84636 1.39936 1.42084 1.64091 1.67666 1.30576 0.98946 1.20403 1.23456 0.96682 0.94594 0.98697 0.87471 0.80961 0.71426 0.81928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -32.04 10.89 21.89 0.24 -31.80 14 2 C 0.03 1.12 5.20 85.40 0.44 1.56 14 3 Si 1.01 27.99 29.60 68.60 2.03 30.02 14 4 H -0.26 -7.06 7.11 99.48 0.71 -6.35 14 5 H -0.26 -7.05 7.11 99.48 0.71 -6.35 14 6 H -0.24 -6.45 7.11 99.48 0.71 -5.75 14 7 C -0.38 -15.98 9.11 23.45 0.21 -15.77 14 8 H 0.12 4.52 7.91 -2.92 -0.02 4.50 14 9 C 0.00 -0.18 5.61 -21.05 -0.12 -0.30 14 10 C 0.00 0.02 11.11 85.51 0.95 0.97 14 11 N -0.45 -24.41 10.08 -187.25 -1.89 -26.30 14 12 C 0.03 1.62 7.59 137.30 1.04 2.66 14 13 C 0.57 27.69 8.35 70.43 0.59 28.27 14 14 O -0.55 -28.24 17.64 20.02 0.35 -27.89 14 15 O -0.50 -19.21 13.21 -56.34 -0.74 -19.95 14 16 N -0.46 -24.71 10.12 -187.24 -1.89 -26.61 14 17 C 0.04 2.26 10.00 85.51 0.86 3.11 14 18 H 0.31 11.31 8.29 -92.70 -0.77 10.55 14 19 H 0.17 7.10 8.06 -2.91 -0.02 7.07 14 20 H 0.43 10.62 9.11 -74.06 -0.67 9.94 14 21 H 0.16 8.07 6.17 -2.91 -0.02 8.05 14 Total: -1.00 -63.03 209.37 2.68 -60.35 By element: Atomic # 1 Polarization: 21.05 SS G_CDS: 0.61 Total: 21.67 kcal Atomic # 6 Polarization: 16.54 SS G_CDS: 3.97 Total: 20.52 kcal Atomic # 7 Polarization: -81.17 SS G_CDS: -3.54 Total: -84.71 kcal Atomic # 8 Polarization: -47.45 SS G_CDS: -0.39 Total: -47.84 kcal Atomic # 14 Polarization: 27.99 SS G_CDS: 2.03 Total: 30.02 kcal Total: -63.03 2.68 -60.35 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259918577.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.939 kcal (2) G-P(sol) polarization free energy of solvation -63.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds