Wall clock time and date at job start Mon Mar 30 2020 01:46:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31666 * 120.42921 * 2 1 4 4 C 1.33599 * 120.79122 * 179.97438 * 3 2 1 5 5 C 1.41148 * 119.16797 * 179.97438 * 4 3 2 6 6 H 1.08002 * 120.00485 * 0.02562 * 5 4 3 7 7 C 1.40050 * 119.99682 * 179.72222 * 5 4 3 8 8 N 1.30724 * 119.99742 * 0.28282 * 7 5 4 9 9 Si 1.86803 * 119.99913 * 180.27722 * 7 5 4 10 10 H 1.48504 * 109.46768 * 60.00340 * 9 7 5 11 11 H 1.48490 * 109.47071 * 180.02562 * 9 7 5 12 12 H 1.48493 * 109.47374 * 300.00617 * 9 7 5 13 13 N 1.33596 * 121.65711 * 0.27729 * 4 3 2 14 14 C 1.31660 * 120.79139 * 359.43105 * 13 4 3 15 15 C 1.50696 * 120.42876 * 180.30263 * 14 13 4 16 16 C 1.40080 * 119.13841 * 0.55703 * 14 13 4 17 17 N 1.38806 * 120.76044 * 179.74995 * 16 14 13 18 18 H 1.08996 * 109.46899 * 90.00265 * 1 2 3 19 19 H 1.09003 * 109.47145 * 210.00130 * 1 2 3 20 20 H 1.08999 * 109.47395 * 330.00489 * 1 2 3 21 21 H 0.97005 * 119.99621 * 179.97438 * 8 7 5 22 22 H 1.09003 * 109.47055 * 270.25008 * 15 14 13 23 23 H 1.08997 * 109.47684 * 30.25371 * 15 14 13 24 24 H 1.09005 * 109.47337 * 150.25724 * 15 14 13 25 25 H 0.96995 * 119.99673 * 179.97438 * 17 16 14 26 26 H 0.97000 * 119.99558 * 359.96723 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1738 1.1353 0.0000 4 6 3.5098 1.1437 0.0005 5 6 4.1899 2.3806 -0.0001 6 1 3.6306 3.3045 -0.0005 7 6 5.5901 2.4097 0.0063 8 7 6.2671 1.2914 0.0073 9 14 6.4902 4.0465 0.0134 10 1 6.1098 4.8153 1.2257 11 1 7.9554 3.8056 0.0190 12 1 6.1208 4.8199 -1.1992 13 7 4.2181 0.0110 -0.0045 14 6 3.6166 -1.1601 0.0012 15 6 4.4237 -2.4327 0.0023 16 6 2.2166 -1.2078 0.0006 17 7 1.5477 -2.4241 0.0012 18 1 -0.3633 0.0000 -1.0276 19 1 -0.3633 -0.8900 0.5139 20 1 -0.3634 0.8900 0.5137 21 1 7.2369 1.3116 0.0113 22 1 4.6186 -2.7403 -1.0251 23 1 5.3696 -2.2626 0.5164 24 1 3.8665 -3.2159 0.5165 25 1 0.5779 -2.4442 0.0011 26 1 2.0501 -3.2538 0.0015 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259925899.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:07 Heat of formation + Delta-G solvation = 15.462273 kcal Electronic energy + Delta-G solvation = -11820.763697 eV Core-core repulsion = 9705.167409 eV Total energy + Delta-G solvation = -2115.596288 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.091 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.99519 -36.53513 -35.12171 -34.67258 -31.29180 -29.64896 -28.72976 -26.60319 -23.05556 -21.98021 -19.32391 -18.68885 -17.10309 -16.83967 -15.76879 -15.62373 -15.54267 -14.23062 -14.09688 -13.56303 -13.36114 -13.31244 -12.85436 -12.74963 -12.73181 -12.46578 -11.93454 -11.87281 -11.18183 -10.91166 -10.55471 -9.18559 -8.47288 -8.27670 -6.30490 0.90456 1.03307 1.42142 1.55414 1.56047 2.27767 2.85384 3.42726 3.93065 3.94632 3.98781 4.18313 4.62446 4.67034 4.81146 4.87095 4.89168 5.02413 5.20028 5.30842 5.48076 5.80390 6.26934 6.66144 6.78339 6.85839 7.34485 7.39819 8.36979 8.54449 Molecular weight = 193.09amu Principal moments of inertia in cm(-1) A = 0.051262 B = 0.012306 C = 0.009996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.078559 B = 2274.721248 C = 2800.347855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.090 3.910 3 N -0.596 5.596 4 C 0.341 3.659 5 C -0.463 4.463 6 H 0.079 0.921 7 C 0.026 3.974 8 N -0.764 5.764 9 Si 0.994 3.006 10 H -0.261 1.261 11 H -0.264 1.264 12 H -0.261 1.261 13 N -0.507 5.507 14 C 0.083 3.917 15 C -0.075 4.075 16 C -0.010 4.010 17 N -0.861 5.861 18 H 0.078 0.922 19 H 0.090 0.910 20 H 0.065 0.935 21 H 0.277 0.723 22 H 0.073 0.927 23 H 0.058 0.942 24 H 0.089 0.911 25 H 0.398 0.602 26 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.265 -5.926 0.022 7.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.064 4.064 3 N -0.317 5.317 4 C 0.096 3.904 5 C -0.500 4.500 6 H 0.097 0.903 7 C -0.195 4.195 8 N -0.388 5.388 9 Si 0.814 3.186 10 H -0.186 1.186 11 H -0.188 1.188 12 H -0.186 1.186 13 N -0.226 5.226 14 C -0.073 4.073 15 C -0.132 4.132 16 C -0.118 4.118 17 N -0.410 5.410 18 H 0.097 0.903 19 H 0.109 0.891 20 H 0.084 0.916 21 H 0.088 0.912 22 H 0.092 0.908 23 H 0.077 0.923 24 H 0.108 0.892 25 H 0.228 0.772 26 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -3.529 -5.084 0.017 6.189 hybrid contribution -0.140 -0.355 -0.009 0.381 sum -3.669 -5.439 0.008 6.560 Atomic orbital electron populations 1.20470 0.87132 1.03153 1.02865 1.21738 0.97987 0.87597 0.99071 1.68386 1.10233 1.29803 1.23252 1.20101 0.84850 0.92969 0.92456 1.19286 0.92018 0.91359 1.47358 0.90310 1.26886 0.97924 1.02082 0.92596 1.70231 1.08010 1.29446 1.31120 0.85102 0.76975 0.76651 0.79858 1.18573 1.18759 1.18574 1.69062 1.38587 0.97080 1.17840 1.22116 0.90307 0.96131 0.98718 1.20397 0.98806 0.91650 1.02393 1.18840 0.92872 0.88950 1.11125 1.41469 1.08175 1.02923 1.88386 0.90296 0.89127 0.91601 0.91196 0.90801 0.92323 0.89231 0.77181 0.77236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.62 9.81 71.23 0.70 -1.92 15 2 C 0.09 4.20 6.86 43.03 0.30 4.49 15 3 N -0.60 -33.71 10.28 -181.55 -1.87 -35.57 15 4 C 0.34 20.89 7.35 134.95 0.99 21.88 15 5 C -0.46 -27.85 9.35 23.42 0.22 -27.63 15 6 H 0.08 4.62 7.85 -2.91 -0.02 4.60 15 7 C 0.03 1.42 5.50 85.30 0.47 1.89 15 8 N -0.76 -43.07 11.41 21.84 0.25 -42.82 15 9 Si 0.99 40.83 29.56 68.60 2.03 42.86 15 10 H -0.26 -10.42 7.11 99.48 0.71 -9.72 15 11 H -0.26 -10.02 7.11 99.48 0.71 -9.31 15 12 H -0.26 -10.42 7.11 99.48 0.71 -9.72 15 13 N -0.51 -29.78 7.77 -181.55 -1.41 -31.19 15 14 C 0.08 4.06 6.86 43.03 0.29 4.36 15 15 C -0.07 -2.78 9.81 71.23 0.70 -2.08 15 16 C -0.01 -0.43 6.80 38.93 0.26 -0.16 15 17 N -0.86 -25.77 8.90 -50.46 -0.45 -26.22 15 18 H 0.08 2.36 8.14 -2.39 -0.02 2.34 15 19 H 0.09 2.34 6.66 -2.39 -0.02 2.32 15 20 H 0.06 2.21 8.14 -2.39 -0.02 2.19 15 21 H 0.28 14.07 8.29 -92.70 -0.77 13.30 15 22 H 0.07 2.52 8.14 -2.39 -0.02 2.50 15 23 H 0.06 2.32 8.14 -2.39 -0.02 2.30 15 24 H 0.09 2.57 6.66 -2.38 -0.02 2.55 15 25 H 0.40 9.67 6.97 -92.71 -0.65 9.02 15 26 H 0.40 9.98 6.97 -92.71 -0.65 9.33 15 Total: -1.00 -72.83 227.52 2.41 -70.42 By element: Atomic # 1 Polarization: 21.79 SS G_CDS: -0.07 Total: 21.72 kcal Atomic # 6 Polarization: -3.12 SS G_CDS: 3.93 Total: 0.81 kcal Atomic # 7 Polarization: -132.33 SS G_CDS: -3.48 Total: -135.80 kcal Atomic # 14 Polarization: 40.83 SS G_CDS: 2.03 Total: 42.86 kcal Total: -72.83 2.41 -70.42 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259925899.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.880 kcal (2) G-P(sol) polarization free energy of solvation -72.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.418 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds