Wall clock time and date at job start Mon Mar 30 2020 01:51:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38757 * 120.63349 * 2 1 4 4 N 1.32196 * 119.11702 * 180.02562 * 3 2 1 5 5 N 1.28748 * 120.38951 * 359.71650 * 4 3 2 6 6 C 1.31974 * 121.35556 * 0.56628 * 5 4 3 7 7 C 1.50708 * 119.56047 * 179.71001 * 6 5 4 8 8 H 1.08994 * 109.46913 * 179.72977 * 7 6 5 9 9 C 1.53005 * 109.46804 * 299.72697 * 7 6 5 10 10 C 1.50692 * 109.47124 * 59.72574 * 7 6 5 11 11 H 1.08001 * 120.00216 * 356.78286 * 10 7 6 12 12 C 1.37879 * 119.99976 * 176.78571 * 10 7 6 13 13 N 1.31514 * 120.00041 * 352.46878 * 12 10 7 14 14 Si 1.86793 * 120.00243 * 172.47306 * 12 10 7 15 15 H 1.48504 * 109.47456 * 265.08954 * 14 12 10 16 16 H 1.48501 * 109.47546 * 145.08834 * 14 12 10 17 17 H 1.48500 * 109.47511 * 25.09037 * 14 12 10 18 18 N 1.32051 * 120.87644 * 359.43268 * 6 5 4 19 19 H 1.08997 * 109.47358 * 269.98248 * 1 2 3 20 20 H 1.09008 * 109.46721 * 29.98244 * 1 2 3 21 21 H 1.09000 * 109.47097 * 149.97809 * 1 2 3 22 22 H 1.07994 * 120.43967 * 0.03688 * 3 2 1 23 23 H 1.09000 * 109.46810 * 179.52608 * 9 7 6 24 24 H 1.08999 * 109.47030 * 299.52756 * 9 7 6 25 25 H 1.08998 * 109.47195 * 59.52893 * 9 7 6 26 26 H 0.97000 * 120.00668 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2140 1.1939 0.0000 4 7 3.5355 1.1589 -0.0005 5 7 4.1572 0.0315 0.0045 6 6 3.5020 -1.1140 -0.0009 7 6 4.2707 -2.4103 -0.0014 8 1 3.5721 -3.2470 -0.0013 9 6 5.1508 -2.4808 -1.2510 10 6 5.1384 -2.4802 1.2287 11 1 5.1733 -1.6454 1.9131 12 6 5.8878 -3.6098 1.4805 13 7 5.7350 -4.6805 0.7323 14 14 7.1201 -3.6195 2.8843 15 1 8.4665 -3.2711 2.3636 16 1 7.1611 -4.9712 3.4977 17 1 6.7124 -2.6237 3.9078 18 7 2.1817 -1.1396 -0.0004 19 1 -0.3634 -0.0003 1.0276 20 1 -0.3633 0.8902 -0.5136 21 1 -0.3633 -0.8898 -0.5142 22 1 1.6917 2.1391 0.0006 23 1 5.7131 -3.4146 -1.2471 24 1 4.5225 -2.4387 -2.1407 25 1 5.8437 -1.6395 -1.2553 26 1 6.2619 -5.4754 0.9096 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259943453.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:08 Heat of formation + Delta-G solvation = 57.927056 kcal Electronic energy + Delta-G solvation = -11670.612032 eV Core-core repulsion = 9556.857155 eV Total energy + Delta-G solvation = -2113.754876 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.091 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.20824 -35.02916 -34.79695 -32.50907 -30.09784 -28.67520 -25.24082 -24.57422 -23.42123 -20.35257 -18.27932 -16.30176 -15.97320 -15.13825 -15.08252 -14.15112 -13.15677 -13.02823 -12.76067 -12.49211 -11.75766 -11.52389 -11.17699 -11.11133 -10.86300 -10.67345 -10.38801 -10.23960 -9.82043 -9.46193 -8.91571 -8.66892 -8.39314 -6.10035 -4.12962 1.11167 1.35713 3.31086 3.37386 3.41947 4.09949 4.18680 4.40952 4.47189 4.61674 5.03787 5.24814 5.37230 5.50675 5.67398 5.93081 5.99095 6.55285 6.72147 6.94082 7.01910 7.47916 7.58184 7.83958 7.89407 8.19416 8.86137 9.17529 9.49679 10.99009 Molecular weight = 193.09amu Principal moments of inertia in cm(-1) A = 0.052629 B = 0.010295 C = 0.009994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.902013 B = 2719.240271 C = 2801.138616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.137 3.863 3 C -0.051 4.051 4 N -0.198 5.198 5 N -0.273 5.273 6 C 0.306 3.694 7 C 0.104 3.896 8 H 0.063 0.937 9 C -0.126 4.126 10 C -0.506 4.506 11 H 0.059 0.941 12 C 0.067 3.933 13 N -0.887 5.887 14 Si 0.899 3.101 15 H -0.278 1.278 16 H -0.286 1.286 17 H -0.274 1.274 18 N -0.476 5.476 19 H 0.086 0.914 20 H 0.080 0.920 21 H 0.084 0.916 22 H 0.172 0.828 23 H 0.082 0.918 24 H 0.011 0.989 25 H 0.043 0.957 26 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.312 7.179 -1.772 11.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.020 4.020 3 C -0.219 4.219 4 N -0.047 5.047 5 N -0.120 5.120 6 C 0.040 3.960 7 C 0.082 3.918 8 H 0.081 0.919 9 C -0.185 4.185 10 C -0.545 4.545 11 H 0.077 0.923 12 C -0.136 4.136 13 N -0.525 5.525 14 Si 0.727 3.273 15 H -0.204 1.204 16 H -0.212 1.212 17 H -0.199 1.199 18 N -0.198 5.198 19 H 0.105 0.895 20 H 0.099 0.901 21 H 0.103 0.897 22 H 0.189 0.811 23 H 0.101 0.899 24 H 0.030 0.970 25 H 0.062 0.938 26 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.158 6.946 -1.792 10.133 hybrid contribution -0.307 0.073 0.790 0.851 sum -7.464 7.019 -1.003 10.295 Atomic orbital electron populations 1.20745 0.87444 1.04018 1.03728 1.22648 0.98812 0.89962 0.90593 1.24702 0.94466 1.00153 1.02582 1.73684 1.07317 1.20174 1.03492 1.73706 1.31414 0.95152 1.11772 1.25964 0.87099 0.98197 0.84742 1.17886 0.93287 0.84333 0.96248 0.91908 1.21719 0.99270 1.03169 0.94338 1.20865 1.25644 1.01572 1.06445 0.92322 1.24887 0.97036 0.94906 0.96732 1.69938 1.40212 1.02628 1.39723 0.86454 0.81646 0.77259 0.81952 1.20366 1.21153 1.19896 1.68983 1.09897 1.29216 1.11719 0.89540 0.90089 0.89745 0.81058 0.89907 0.97033 0.93791 0.92663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.08 10.23 36.01 0.37 -0.71 15 2 C 0.14 2.25 6.83 -82.14 -0.56 1.69 15 3 C -0.05 -0.81 11.05 -17.20 -0.19 -1.00 15 4 N -0.20 -4.03 11.63 30.63 0.36 -3.68 15 5 N -0.27 -6.45 11.08 32.42 0.36 -6.09 15 6 C 0.31 7.33 6.34 -156.82 -0.99 6.33 15 7 C 0.10 2.71 2.54 -92.92 -0.24 2.47 15 8 H 0.06 1.75 8.10 -51.93 -0.42 1.32 15 9 C -0.13 -3.11 8.92 37.16 0.33 -2.78 15 10 C -0.51 -14.28 8.37 -34.44 -0.29 -14.56 15 11 H 0.06 1.70 7.75 -52.49 -0.41 1.29 15 12 C 0.07 1.85 5.22 -17.82 -0.09 1.76 15 13 N -0.89 -25.13 11.91 55.43 0.66 -24.47 15 14 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 15 15 H -0.28 -6.59 7.11 56.52 0.40 -6.19 15 16 H -0.29 -6.72 7.11 56.52 0.40 -6.32 15 17 H -0.27 -6.59 7.11 56.52 0.40 -6.19 15 18 N -0.48 -10.10 10.37 -6.84 -0.07 -10.17 15 19 H 0.09 0.81 8.14 -51.93 -0.42 0.39 15 20 H 0.08 0.60 8.10 -51.92 -0.42 0.18 15 21 H 0.08 0.91 8.14 -51.93 -0.42 0.48 15 22 H 0.17 1.87 8.06 -52.49 -0.42 1.45 15 23 H 0.08 2.15 6.62 -51.93 -0.34 1.81 15 24 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 15 25 H 0.04 1.07 8.02 -51.93 -0.42 0.65 15 26 H 0.26 7.06 8.31 -40.82 -0.34 6.72 15 LS Contribution 234.74 15.07 3.54 3.54 Total: -1.00 -31.01 234.74 -4.68 -35.69 By element: Atomic # 1 Polarization: -1.74 SS G_CDS: -2.83 Total: -4.58 kcal Atomic # 6 Polarization: -5.14 SS G_CDS: -1.66 Total: -6.80 kcal Atomic # 7 Polarization: -45.71 SS G_CDS: 1.30 Total: -44.40 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 3.54 Total: 3.54 kcal Total: -31.01 -4.68 -35.69 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259943453.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.615 kcal (2) G-P(sol) polarization free energy of solvation -31.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.687 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds