Wall clock time and date at job start Mon Mar 30 2020 01:51:10
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50700 * 1
3 3 C 1.38750 * 120.63386 * 2 1
4 4 N 1.32193 * 119.12508 * 179.72652 * 3 2 1
5 5 N 1.28749 * 120.38507 * 0.27948 * 4 3 2
6 6 C 1.31975 * 121.35865 * 359.97438 * 5 4 3
7 7 C 1.50700 * 119.56260 * 179.97438 * 6 5 4
8 8 H 1.08997 * 109.47290 * 180.02562 * 7 6 5
9 9 C 1.53006 * 109.46768 * 60.00735 * 7 6 5
10 10 C 1.50694 * 109.47321 * 300.00824 * 7 6 5
11 11 H 1.08000 * 120.00407 * 35.01126 * 10 7 6
12 12 C 1.37874 * 120.00015 * 215.01228 * 10 7 6
13 13 N 1.31521 * 120.00402 * 184.91304 * 12 10 7
14 14 Si 1.86803 * 119.99872 * 4.91802 * 12 10 7
15 15 H 1.48500 * 109.47362 * 84.83405 * 14 12 10
16 16 H 1.48500 * 109.47121 * 204.83303 * 14 12 10
17 17 H 1.48500 * 109.46944 * 324.83054 * 14 12 10
18 18 N 1.32051 * 120.87336 * 0.02562 * 6 5 4
19 19 H 1.09001 * 109.47427 * 89.99732 * 1 2 3
20 20 H 1.09007 * 109.46978 * 209.99519 * 1 2 3
21 21 H 1.08997 * 109.47041 * 329.99329 * 1 2 3
22 22 H 1.08006 * 120.44153 * 0.02562 * 3 2 1
23 23 H 1.08997 * 109.47266 * 55.01504 * 9 7 6
24 24 H 1.09004 * 109.47006 * 175.01288 * 9 7 6
25 25 H 1.09007 * 109.47154 * 295.01084 * 9 7 6
26 26 H 0.96994 * 119.99869 * 180.02562 * 13 12 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.2140 1.1939 0.0000
4 7 3.5355 1.1591 0.0055
5 7 4.1572 0.0317 0.0054
6 6 3.5021 -1.1140 0.0003
7 6 4.2708 -2.4101 -0.0002
8 1 3.5724 -3.2469 -0.0051
9 6 5.1469 -2.4839 1.2521
10 6 5.1425 -2.4767 -1.2277
11 1 5.5958 -1.5773 -1.6176
12 6 5.3613 -3.6858 -1.8530
13 7 6.1979 -3.7609 -2.8651
14 14 4.4695 -5.2175 -1.2628
15 1 3.1305 -5.2875 -1.9010
16 1 5.2569 -6.4215 -1.6310
17 1 4.3123 -5.1610 0.2128
18 7 2.1818 -1.1395 -0.0053
19 1 -0.3634 0.0000 -1.0277
20 1 -0.3633 -0.8901 0.5138
21 1 -0.3633 0.8899 0.5139
22 1 1.6916 2.1392 0.0004
23 1 4.5268 -2.3470 2.1379
24 1 5.6350 -3.4575 1.2972
25 1 5.9032 -1.6998 1.2132
26 1 6.3515 -4.6115 -3.3052
RHF calculation, no. of doubly occupied orbitals= 35
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000259943467.mol2 26
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:51:10
Heat of formation + Delta-G solvation = 59.337874 kcal
Electronic energy + Delta-G solvation = -11712.600929 eV
Core-core repulsion = 9598.907230 eV
Total energy + Delta-G solvation = -2113.693699 eV
No. of doubly occupied orbitals = 35
Molecular weight
(most abundant/longest-lived isotopes) = 193.091 amu
Computer time = 0.17 seconds
Orbital eigenvalues (eV)
-41.26700 -35.14819 -34.84712 -32.46654 -30.75933 -28.75778 -25.35445 -24.69509
-23.44800 -20.18078 -18.41372 -16.77270 -16.02303 -15.38162 -15.08745 -14.03191
-13.37977 -13.14977 -12.67258 -12.51598 -12.29326 -11.66326 -11.58630 -11.18599
-10.98964 -10.73459 -10.58239 -10.09854 -9.87600 -9.45165 -9.07057 -8.70497
-8.62802 -6.16824 -4.18440 1.06277 1.30414 3.25449 3.33214 3.34815
4.05104 4.12267 4.33954 4.36231 4.57363 4.98496 5.15791 5.33250
5.47190 5.63309 5.80458 5.91311 6.32951 6.36232 6.58668 6.65801
6.95210 7.23194 7.50287 7.60760 8.38921 8.91959 9.11611 9.41820
10.95207
Molecular weight = 193.09amu
Principal moments of inertia in cm(-1)
A = 0.045246 B = 0.011937 C = 0.011027
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 618.693675 B = 2345.026127 C = 2538.566661
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.102 4.102
2 C 0.139 3.861
3 C -0.049 4.049
4 N -0.194 5.194
5 N -0.271 5.271
6 C 0.309 3.691
7 C 0.073 3.927
8 H 0.060 0.940
9 C -0.132 4.132
10 C -0.508 4.508
11 H 0.084 0.916
12 C 0.077 3.923
13 N -0.889 5.889
14 Si 0.874 3.126
15 H -0.273 1.273
16 H -0.285 1.285
17 H -0.261 1.261
18 N -0.481 5.481
19 H 0.087 0.913
20 H 0.083 0.917
21 H 0.081 0.919
22 H 0.174 0.826
23 H 0.021 0.979
24 H 0.057 0.943
25 H 0.061 0.939
26 H 0.267 0.733
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.792 4.992 6.400 13.504
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.160 4.160
2 C -0.018 4.018
3 C -0.217 4.217
4 N -0.043 5.043
5 N -0.119 5.119
6 C 0.042 3.958
7 C 0.051 3.949
8 H 0.078 0.922
9 C -0.191 4.191
10 C -0.547 4.547
11 H 0.102 0.898
12 C -0.127 4.127
13 N -0.525 5.525
14 Si 0.700 3.300
15 H -0.198 1.198
16 H -0.211 1.211
17 H -0.186 1.186
18 N -0.203 5.203
19 H 0.106 0.894
20 H 0.102 0.898
21 H 0.100 0.900
22 H 0.191 0.809
23 H 0.040 0.960
24 H 0.076 0.924
25 H 0.080 0.920
26 H 0.077 0.923
Dipole moment (debyes) X Y Z Total
from point charges -9.604 4.819 6.253 12.432
hybrid contribution -1.395 -0.734 0.022 1.577
sum -10.999 4.085 6.275 13.306
Atomic orbital electron populations
1.20751 0.87379 1.04012 1.03826 1.22624 0.98783 0.89893 0.90454
1.24710 0.94414 1.00174 1.02419 1.73690 1.07325 1.19924 1.03356
1.73665 1.31379 0.95091 1.11722 1.25649 0.87032 0.97896 0.85204
1.18249 0.93510 0.85999 0.97156 0.92240 1.21977 0.99649 1.02210
0.95276 1.20823 1.28202 0.96593 1.09060 0.89784 1.25023 0.94620
0.98645 0.94365 1.69885 1.34385 1.26283 1.21989 0.86896 0.80245
0.82726 0.80095 1.19837 1.21126 1.18576 1.68919 1.09779 1.29487
1.12098 0.89440 0.89804 0.90008 0.80935 0.95985 0.92441 0.92030
0.92278
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.10 -1.05 10.23 36.01 0.37 -0.68 15
2 C 0.14 2.24 6.83 -82.14 -0.56 1.68 15
3 C -0.05 -0.77 11.05 -17.21 -0.19 -0.96 15
4 N -0.19 -3.92 11.63 30.63 0.36 -3.56 15
5 N -0.27 -6.31 11.11 32.42 0.36 -5.95 15
6 C 0.31 7.18 6.38 -156.82 -1.00 6.18 15
7 C 0.07 1.79 2.31 -92.92 -0.22 1.57 15
8 H 0.06 1.45 5.25 -51.93 -0.27 1.18 15
9 C -0.13 -2.91 9.04 37.16 0.34 -2.57 15
10 C -0.51 -14.49 8.74 -34.44 -0.30 -14.79 15
11 H 0.08 2.66 7.99 -52.49 -0.42 2.24 15
12 C 0.08 2.20 5.47 -17.82 -0.10 2.10 15
13 N -0.89 -26.93 13.96 55.43 0.77 -26.15 15
14 Si 0.87 21.15 26.99 -169.99 -4.59 16.56 15
15 H -0.27 -6.55 7.11 56.52 0.40 -6.15 15
16 H -0.29 -6.80 7.11 56.52 0.40 -6.40 15
17 H -0.26 -5.97 6.82 56.52 0.39 -5.59 15
18 N -0.48 -9.94 10.37 -6.84 -0.07 -10.01 15
19 H 0.09 0.81 8.14 -51.93 -0.42 0.39 15
20 H 0.08 0.86 8.14 -51.93 -0.42 0.44 15
21 H 0.08 0.58 8.10 -51.93 -0.42 0.16 15
22 H 0.17 1.84 8.06 -52.48 -0.42 1.42 15
23 H 0.02 0.42 8.14 -51.93 -0.42 0.00 15
24 H 0.06 1.22 8.14 -51.93 -0.42 0.80 15
25 H 0.06 1.36 8.14 -51.93 -0.42 0.94 15
26 H 0.27 7.54 8.31 -40.82 -0.34 7.20 15
LS Contribution 233.56 15.07 3.52 3.52
Total: -1.00 -32.32 233.56 -4.11 -36.43
By element:
Atomic # 1 Polarization: -0.57 SS G_CDS: -2.80 Total: -3.37 kcal
Atomic # 6 Polarization: -5.81 SS G_CDS: -1.66 Total: -7.47 kcal
Atomic # 7 Polarization: -47.09 SS G_CDS: 1.42 Total: -45.67 kcal
Atomic # 14 Polarization: 21.15 SS G_CDS: -4.59 Total: 16.56 kcal
Total LS contribution 3.52 Total: 3.52 kcal
Total: -32.32 -4.11 -36.43 kcal
The number of atoms in the molecule is 26
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000259943467.mol2 26
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 95.766 kcal
(2) G-P(sol) polarization free energy of solvation -32.318 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.448 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.110 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.428 kcal
(6) G-S(sol) free energy of system = (1) + (5) 59.338 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.17 seconds