Wall clock time and date at job start Mon Mar 30 2020 01:51:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38750 * 120.63386 * 2 1 4 4 N 1.32193 * 119.12508 * 179.72652 * 3 2 1 5 5 N 1.28749 * 120.38507 * 0.27948 * 4 3 2 6 6 C 1.31975 * 121.35865 * 359.97438 * 5 4 3 7 7 C 1.50700 * 119.56260 * 179.97438 * 6 5 4 8 8 H 1.08997 * 109.47290 * 180.02562 * 7 6 5 9 9 C 1.53006 * 109.46768 * 60.00735 * 7 6 5 10 10 C 1.50694 * 109.47321 * 300.00824 * 7 6 5 11 11 H 1.08000 * 120.00407 * 35.01126 * 10 7 6 12 12 C 1.37874 * 120.00015 * 215.01228 * 10 7 6 13 13 N 1.31521 * 120.00402 * 184.91304 * 12 10 7 14 14 Si 1.86803 * 119.99872 * 4.91802 * 12 10 7 15 15 H 1.48500 * 109.47362 * 84.83405 * 14 12 10 16 16 H 1.48500 * 109.47121 * 204.83303 * 14 12 10 17 17 H 1.48500 * 109.46944 * 324.83054 * 14 12 10 18 18 N 1.32051 * 120.87336 * 0.02562 * 6 5 4 19 19 H 1.09001 * 109.47427 * 89.99732 * 1 2 3 20 20 H 1.09007 * 109.46978 * 209.99519 * 1 2 3 21 21 H 1.08997 * 109.47041 * 329.99329 * 1 2 3 22 22 H 1.08006 * 120.44153 * 0.02562 * 3 2 1 23 23 H 1.08997 * 109.47266 * 55.01504 * 9 7 6 24 24 H 1.09004 * 109.47006 * 175.01288 * 9 7 6 25 25 H 1.09007 * 109.47154 * 295.01084 * 9 7 6 26 26 H 0.96994 * 119.99869 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2140 1.1939 0.0000 4 7 3.5355 1.1591 0.0055 5 7 4.1572 0.0317 0.0054 6 6 3.5021 -1.1140 0.0003 7 6 4.2708 -2.4101 -0.0002 8 1 3.5724 -3.2469 -0.0051 9 6 5.1469 -2.4839 1.2521 10 6 5.1425 -2.4767 -1.2277 11 1 5.5958 -1.5773 -1.6176 12 6 5.3613 -3.6858 -1.8530 13 7 6.1979 -3.7609 -2.8651 14 14 4.4695 -5.2175 -1.2628 15 1 3.1305 -5.2875 -1.9010 16 1 5.2569 -6.4215 -1.6310 17 1 4.3123 -5.1610 0.2128 18 7 2.1818 -1.1395 -0.0053 19 1 -0.3634 0.0000 -1.0277 20 1 -0.3633 -0.8901 0.5138 21 1 -0.3633 0.8899 0.5139 22 1 1.6916 2.1392 0.0004 23 1 4.5268 -2.3470 2.1379 24 1 5.6350 -3.4575 1.2972 25 1 5.9032 -1.6998 1.2132 26 1 6.3515 -4.6115 -3.3052 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259943467.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:10 Heat of formation + Delta-G solvation = 35.352140 kcal Electronic energy + Delta-G solvation = -11713.641028 eV Core-core repulsion = 9598.907230 eV Total energy + Delta-G solvation = -2114.733798 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.091 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.74708 -36.92799 -36.24808 -34.37208 -32.49660 -29.94164 -27.35460 -26.27102 -24.87151 -21.92941 -19.99887 -18.80116 -17.38688 -17.06240 -16.58794 -15.81590 -14.90645 -14.56850 -14.16596 -14.10246 -13.41071 -13.35737 -13.03588 -12.92956 -12.78599 -12.47633 -12.08682 -11.81332 -11.78668 -11.36619 -10.79044 -10.71406 -10.19820 -8.35017 -6.43021 -0.33098 -0.15079 1.35488 1.36543 1.48057 2.31267 2.54862 2.76207 2.85636 3.05115 3.35276 3.87408 4.10109 4.26763 4.53204 4.71473 4.72806 4.76016 4.88057 4.93193 5.12748 5.28641 5.44680 5.52253 6.09356 6.21383 6.63807 7.21270 7.60995 8.81447 Molecular weight = 193.09amu Principal moments of inertia in cm(-1) A = 0.045246 B = 0.011937 C = 0.011027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.693675 B = 2345.026127 C = 2538.566661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.147 3.853 3 C -0.025 4.025 4 N -0.229 5.229 5 N -0.317 5.317 6 C 0.287 3.713 7 C 0.072 3.928 8 H 0.063 0.937 9 C -0.125 4.125 10 C -0.515 4.515 11 H 0.031 0.969 12 C 0.019 3.981 13 N -0.941 5.941 14 Si 0.942 3.058 15 H -0.266 1.266 16 H -0.279 1.279 17 H -0.236 1.236 18 N -0.505 5.505 19 H 0.106 0.894 20 H 0.086 0.914 21 H 0.126 0.874 22 H 0.232 0.768 23 H 0.048 0.952 24 H 0.061 0.939 25 H 0.047 0.953 26 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.016 5.248 7.812 16.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.010 4.010 3 C -0.196 4.196 4 N -0.074 5.074 5 N -0.163 5.163 6 C 0.018 3.982 7 C 0.050 3.950 8 H 0.081 0.919 9 C -0.183 4.183 10 C -0.553 4.553 11 H 0.050 0.950 12 C -0.179 4.179 13 N -0.580 5.580 14 Si 0.764 3.236 15 H -0.191 1.191 16 H -0.205 1.205 17 H -0.160 1.160 18 N -0.227 5.227 19 H 0.124 0.876 20 H 0.105 0.895 21 H 0.144 0.856 22 H 0.249 0.751 23 H 0.067 0.933 24 H 0.080 0.920 25 H 0.066 0.934 26 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -12.791 5.102 7.685 15.771 hybrid contribution -0.550 -0.569 -0.433 0.902 sum -13.341 4.533 7.252 15.847 Atomic orbital electron populations 1.21021 0.82580 1.06380 1.05530 1.23712 1.01473 0.88618 0.87242 1.25679 0.92919 1.02633 0.98333 1.73563 1.09900 1.18843 1.05111 1.73567 1.32957 0.95883 1.13862 1.25185 0.88309 0.97291 0.87409 1.18114 0.93369 0.87429 0.96072 0.91895 1.21836 0.99316 1.01932 0.95264 1.20892 1.28936 0.94881 1.10631 0.95035 1.25945 0.95287 1.02304 0.94398 1.70038 1.36493 1.27464 1.23968 0.85813 0.78835 0.77936 0.81001 1.19125 1.20452 1.15961 1.68902 1.08608 1.31842 1.13354 0.87609 0.89511 0.85607 0.75143 0.93348 0.92006 0.93425 0.92026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.49 10.23 71.24 0.73 -0.76 15 2 C 0.15 4.23 6.83 42.59 0.29 4.52 15 3 C -0.02 -0.70 11.05 84.76 0.94 0.24 15 4 N -0.23 -9.06 11.63 -57.02 -0.66 -9.72 15 5 N -0.32 -15.11 11.11 -51.35 -0.57 -15.68 15 6 C 0.29 13.40 6.38 138.62 0.88 14.28 15 7 C 0.07 3.56 2.31 -12.29 -0.03 3.53 15 8 H 0.06 3.02 5.25 -2.39 -0.01 3.01 15 9 C -0.12 -5.48 9.04 71.98 0.65 -4.83 15 10 C -0.51 -30.62 8.74 25.60 0.22 -30.40 15 11 H 0.03 2.14 7.99 -2.91 -0.02 2.12 15 12 C 0.02 1.12 5.47 84.65 0.46 1.58 15 13 N -0.94 -59.26 13.96 21.45 0.30 -58.96 15 14 Si 0.94 43.64 26.99 68.60 1.85 45.49 15 15 H -0.27 -11.98 7.11 99.48 0.71 -11.27 15 16 H -0.28 -12.53 7.11 99.48 0.71 -11.83 15 17 H -0.24 -9.93 6.82 99.48 0.68 -9.25 15 18 N -0.50 -20.08 10.37 -175.57 -1.82 -21.90 15 19 H 0.11 1.37 8.14 -2.39 -0.02 1.35 15 20 H 0.09 1.36 8.14 -2.38 -0.02 1.35 15 21 H 0.13 0.89 8.10 -2.39 -0.02 0.87 15 22 H 0.23 3.51 8.06 -2.91 -0.02 3.49 15 23 H 0.05 1.83 8.14 -2.39 -0.02 1.81 15 24 H 0.06 2.58 8.14 -2.38 -0.02 2.57 15 25 H 0.05 2.17 8.14 -2.38 -0.02 2.15 15 26 H 0.27 15.77 8.31 -92.71 -0.77 15.00 15 Total: -1.00 -75.66 233.56 4.39 -71.26 By element: Atomic # 1 Polarization: 0.20 SS G_CDS: 1.15 Total: 1.34 kcal Atomic # 6 Polarization: -15.98 SS G_CDS: 4.15 Total: -11.83 kcal Atomic # 7 Polarization: -103.51 SS G_CDS: -2.76 Total: -106.27 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 1.85 Total: 45.49 kcal Total: -75.66 4.39 -71.26 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259943467.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.615 kcal (2) G-P(sol) polarization free energy of solvation -75.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds