Wall clock time and date at job start Mon Mar 30 2020 01:51:10
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50700 * 1
3 3 C 1.38750 * 120.63386 * 2 1
4 4 N 1.32193 * 119.12508 * 179.72652 * 3 2 1
5 5 N 1.28749 * 120.38507 * 0.27948 * 4 3 2
6 6 C 1.31975 * 121.35865 * 359.97438 * 5 4 3
7 7 C 1.50700 * 119.56260 * 179.97438 * 6 5 4
8 8 H 1.08997 * 109.47290 * 180.02562 * 7 6 5
9 9 C 1.53006 * 109.46768 * 60.00735 * 7 6 5
10 10 C 1.50694 * 109.47321 * 300.00824 * 7 6 5
11 11 H 1.08000 * 120.00407 * 35.01126 * 10 7 6
12 12 C 1.37874 * 120.00015 * 215.01228 * 10 7 6
13 13 N 1.31521 * 120.00402 * 184.91304 * 12 10 7
14 14 Si 1.86803 * 119.99872 * 4.91802 * 12 10 7
15 15 H 1.48500 * 109.47362 * 84.83405 * 14 12 10
16 16 H 1.48500 * 109.47121 * 204.83303 * 14 12 10
17 17 H 1.48500 * 109.46944 * 324.83054 * 14 12 10
18 18 N 1.32051 * 120.87336 * 0.02562 * 6 5 4
19 19 H 1.09001 * 109.47427 * 89.99732 * 1 2 3
20 20 H 1.09007 * 109.46978 * 209.99519 * 1 2 3
21 21 H 1.08997 * 109.47041 * 329.99329 * 1 2 3
22 22 H 1.08006 * 120.44153 * 0.02562 * 3 2 1
23 23 H 1.08997 * 109.47266 * 55.01504 * 9 7 6
24 24 H 1.09004 * 109.47006 * 175.01288 * 9 7 6
25 25 H 1.09007 * 109.47154 * 295.01084 * 9 7 6
26 26 H 0.96994 * 119.99869 * 180.02562 * 13 12 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.2140 1.1939 0.0000
4 7 3.5355 1.1591 0.0055
5 7 4.1572 0.0317 0.0054
6 6 3.5021 -1.1140 0.0003
7 6 4.2708 -2.4101 -0.0002
8 1 3.5724 -3.2469 -0.0051
9 6 5.1469 -2.4839 1.2521
10 6 5.1425 -2.4767 -1.2277
11 1 5.5958 -1.5773 -1.6176
12 6 5.3613 -3.6858 -1.8530
13 7 6.1979 -3.7609 -2.8651
14 14 4.4695 -5.2175 -1.2628
15 1 3.1305 -5.2875 -1.9010
16 1 5.2569 -6.4215 -1.6310
17 1 4.3123 -5.1610 0.2128
18 7 2.1818 -1.1395 -0.0053
19 1 -0.3634 0.0000 -1.0277
20 1 -0.3633 -0.8901 0.5138
21 1 -0.3633 0.8899 0.5139
22 1 1.6916 2.1392 0.0004
23 1 4.5268 -2.3470 2.1379
24 1 5.6350 -3.4575 1.2972
25 1 5.9032 -1.6998 1.2132
26 1 6.3515 -4.6115 -3.3052
RHF calculation, no. of doubly occupied orbitals= 35
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000259943467.mol2 26
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:51:10
Heat of formation + Delta-G solvation = 35.352140 kcal
Electronic energy + Delta-G solvation = -11713.641028 eV
Core-core repulsion = 9598.907230 eV
Total energy + Delta-G solvation = -2114.733798 eV
No. of doubly occupied orbitals = 35
Molecular weight
(most abundant/longest-lived isotopes) = 193.091 amu
Computer time = 0.17 seconds
Orbital eigenvalues (eV)
-42.74708 -36.92799 -36.24808 -34.37208 -32.49660 -29.94164 -27.35460 -26.27102
-24.87151 -21.92941 -19.99887 -18.80116 -17.38688 -17.06240 -16.58794 -15.81590
-14.90645 -14.56850 -14.16596 -14.10246 -13.41071 -13.35737 -13.03588 -12.92956
-12.78599 -12.47633 -12.08682 -11.81332 -11.78668 -11.36619 -10.79044 -10.71406
-10.19820 -8.35017 -6.43021 -0.33098 -0.15079 1.35488 1.36543 1.48057
2.31267 2.54862 2.76207 2.85636 3.05115 3.35276 3.87408 4.10109
4.26763 4.53204 4.71473 4.72806 4.76016 4.88057 4.93193 5.12748
5.28641 5.44680 5.52253 6.09356 6.21383 6.63807 7.21270 7.60995
8.81447
Molecular weight = 193.09amu
Principal moments of inertia in cm(-1)
A = 0.045246 B = 0.011937 C = 0.011027
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 618.693675 B = 2345.026127 C = 2538.566661
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.098 4.098
2 C 0.147 3.853
3 C -0.025 4.025
4 N -0.229 5.229
5 N -0.317 5.317
6 C 0.287 3.713
7 C 0.072 3.928
8 H 0.063 0.937
9 C -0.125 4.125
10 C -0.515 4.515
11 H 0.031 0.969
12 C 0.019 3.981
13 N -0.941 5.941
14 Si 0.942 3.058
15 H -0.266 1.266
16 H -0.279 1.279
17 H -0.236 1.236
18 N -0.505 5.505
19 H 0.106 0.894
20 H 0.086 0.914
21 H 0.126 0.874
22 H 0.232 0.768
23 H 0.048 0.952
24 H 0.061 0.939
25 H 0.047 0.953
26 H 0.271 0.729
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.016 5.248 7.812 16.883
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.155 4.155
2 C -0.010 4.010
3 C -0.196 4.196
4 N -0.074 5.074
5 N -0.163 5.163
6 C 0.018 3.982
7 C 0.050 3.950
8 H 0.081 0.919
9 C -0.183 4.183
10 C -0.553 4.553
11 H 0.050 0.950
12 C -0.179 4.179
13 N -0.580 5.580
14 Si 0.764 3.236
15 H -0.191 1.191
16 H -0.205 1.205
17 H -0.160 1.160
18 N -0.227 5.227
19 H 0.124 0.876
20 H 0.105 0.895
21 H 0.144 0.856
22 H 0.249 0.751
23 H 0.067 0.933
24 H 0.080 0.920
25 H 0.066 0.934
26 H 0.080 0.920
Dipole moment (debyes) X Y Z Total
from point charges -12.791 5.102 7.685 15.771
hybrid contribution -0.550 -0.569 -0.433 0.902
sum -13.341 4.533 7.252 15.847
Atomic orbital electron populations
1.21021 0.82580 1.06380 1.05530 1.23712 1.01473 0.88618 0.87242
1.25679 0.92919 1.02633 0.98333 1.73563 1.09900 1.18843 1.05111
1.73567 1.32957 0.95883 1.13862 1.25185 0.88309 0.97291 0.87409
1.18114 0.93369 0.87429 0.96072 0.91895 1.21836 0.99316 1.01932
0.95264 1.20892 1.28936 0.94881 1.10631 0.95035 1.25945 0.95287
1.02304 0.94398 1.70038 1.36493 1.27464 1.23968 0.85813 0.78835
0.77936 0.81001 1.19125 1.20452 1.15961 1.68902 1.08608 1.31842
1.13354 0.87609 0.89511 0.85607 0.75143 0.93348 0.92006 0.93425
0.92026
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.10 -1.49 10.23 71.24 0.73 -0.76 15
2 C 0.15 4.23 6.83 42.59 0.29 4.52 15
3 C -0.02 -0.70 11.05 84.76 0.94 0.24 15
4 N -0.23 -9.06 11.63 -57.02 -0.66 -9.72 15
5 N -0.32 -15.11 11.11 -51.35 -0.57 -15.68 15
6 C 0.29 13.40 6.38 138.62 0.88 14.28 15
7 C 0.07 3.56 2.31 -12.29 -0.03 3.53 15
8 H 0.06 3.02 5.25 -2.39 -0.01 3.01 15
9 C -0.12 -5.48 9.04 71.98 0.65 -4.83 15
10 C -0.51 -30.62 8.74 25.60 0.22 -30.40 15
11 H 0.03 2.14 7.99 -2.91 -0.02 2.12 15
12 C 0.02 1.12 5.47 84.65 0.46 1.58 15
13 N -0.94 -59.26 13.96 21.45 0.30 -58.96 15
14 Si 0.94 43.64 26.99 68.60 1.85 45.49 15
15 H -0.27 -11.98 7.11 99.48 0.71 -11.27 15
16 H -0.28 -12.53 7.11 99.48 0.71 -11.83 15
17 H -0.24 -9.93 6.82 99.48 0.68 -9.25 15
18 N -0.50 -20.08 10.37 -175.57 -1.82 -21.90 15
19 H 0.11 1.37 8.14 -2.39 -0.02 1.35 15
20 H 0.09 1.36 8.14 -2.38 -0.02 1.35 15
21 H 0.13 0.89 8.10 -2.39 -0.02 0.87 15
22 H 0.23 3.51 8.06 -2.91 -0.02 3.49 15
23 H 0.05 1.83 8.14 -2.39 -0.02 1.81 15
24 H 0.06 2.58 8.14 -2.38 -0.02 2.57 15
25 H 0.05 2.17 8.14 -2.38 -0.02 2.15 15
26 H 0.27 15.77 8.31 -92.71 -0.77 15.00 15
Total: -1.00 -75.66 233.56 4.39 -71.26
By element:
Atomic # 1 Polarization: 0.20 SS G_CDS: 1.15 Total: 1.34 kcal
Atomic # 6 Polarization: -15.98 SS G_CDS: 4.15 Total: -11.83 kcal
Atomic # 7 Polarization: -103.51 SS G_CDS: -2.76 Total: -106.27 kcal
Atomic # 14 Polarization: 43.64 SS G_CDS: 1.85 Total: 45.49 kcal
Total: -75.66 4.39 -71.26 kcal
The number of atoms in the molecule is 26
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000259943467.mol2 26
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 106.615 kcal
(2) G-P(sol) polarization free energy of solvation -75.655 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.960 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.393 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.263 kcal
(6) G-S(sol) free energy of system = (1) + (5) 35.352 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.17 seconds