Wall clock time and date at job start Mon Mar 30 2020 02:19:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.46918 * 2 1 4 4 C 1.52997 * 109.47152 * 119.99518 * 2 1 3 5 5 H 1.08992 * 109.47418 * 301.74958 * 4 2 1 6 6 C 1.50701 * 109.47162 * 181.74270 * 4 2 1 7 7 H 1.08000 * 120.00480 * 275.48826 * 6 4 2 8 8 C 1.37886 * 119.99560 * 95.48719 * 6 4 2 9 9 N 1.31511 * 119.99833 * 6.81334 * 8 6 4 10 10 Si 1.86795 * 119.99888 * 186.81345 * 8 6 4 11 11 H 1.48497 * 109.47148 * 59.99559 * 10 8 6 12 12 H 1.48498 * 109.47297 * 180.02562 * 10 8 6 13 13 H 1.48503 * 109.46879 * 299.99975 * 10 8 6 14 14 C 1.50701 * 109.47032 * 61.74954 * 4 2 1 15 15 C 1.34855 * 125.88903 * 34.95139 * 14 4 2 16 16 C 1.40901 * 107.41338 * 179.80744 * 15 14 4 17 17 C 1.34846 * 107.41774 * 0.38458 * 16 15 14 18 18 N 1.36341 * 125.89280 * 215.00105 * 14 4 2 19 19 H 0.97000 * 125.63511 * 359.93599 * 18 14 4 20 20 H 1.08995 * 109.47702 * 299.99806 * 1 2 3 21 21 H 1.09008 * 109.47121 * 60.00432 * 1 2 3 22 22 H 1.09006 * 109.46748 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47368 * 240.00436 * 2 1 3 24 24 H 1.08999 * 109.46968 * 185.88046 * 3 2 1 25 25 H 1.09006 * 109.46862 * 305.87984 * 3 2 1 26 26 H 1.08994 * 109.47172 * 65.87492 * 3 2 1 27 27 H 0.97000 * 119.99753 * 180.02562 * 9 8 6 28 28 H 1.08003 * 126.29254 * 0.06553 * 15 14 4 29 29 H 1.07995 * 126.28768 * 180.24217 * 16 15 14 30 30 H 1.08000 * 125.89117 * 179.89003 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 1 1.6513 -0.2257 2.1389 6 6 3.5464 -0.6838 1.2711 7 1 4.1129 -1.4261 0.7285 8 6 4.2013 0.2982 1.9838 9 7 3.5189 1.1195 2.7514 10 14 6.0579 0.4618 1.8589 11 1 6.4376 0.7286 0.4483 12 1 6.5146 1.5853 2.7159 13 1 6.6976 -0.7988 2.3138 14 6 1.5734 -2.1539 1.2279 15 6 1.4338 -2.9235 0.1293 16 6 0.9813 -4.1881 0.5552 17 6 0.8535 -4.1404 1.8967 18 7 1.2186 -2.8954 2.3157 19 1 1.2253 -2.5880 3.2357 20 1 -0.3634 0.5138 0.8899 21 1 -0.3634 0.5138 -0.8901 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8934 -0.5138 -0.8900 24 1 3.1248 1.4444 -0.1053 25 1 1.5931 1.9858 -0.8327 26 1 1.7650 1.9251 0.9378 27 1 3.9797 1.8105 3.2525 28 1 1.6360 -2.6266 -0.8892 29 1 0.7727 -5.0385 -0.0770 30 1 0.5234 -4.9502 2.5305 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259944081.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:44 Heat of formation + Delta-G solvation = 22.792034 kcal Electronic energy + Delta-G solvation = -12295.306443 eV Core-core repulsion = 10283.568341 eV Total energy + Delta-G solvation = -2011.738102 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 193.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.17018 -35.67916 -32.11962 -29.96294 -29.10157 -26.53985 -25.40824 -22.91745 -19.89780 -19.69661 -18.26415 -16.65490 -16.27535 -14.47324 -13.51543 -13.39816 -12.90057 -12.72797 -12.59629 -12.05980 -11.72229 -11.37991 -11.21042 -11.03087 -10.87567 -10.59809 -10.09452 -9.88768 -9.65267 -9.14829 -9.05939 -8.45565 -7.95832 -6.97525 -6.04836 -4.06975 3.25111 3.30774 3.34708 3.40147 3.97663 4.28835 4.44444 5.24596 5.86007 6.03937 6.18030 6.23245 6.30265 6.50211 6.52548 6.69528 6.87379 6.93111 7.00206 7.11978 7.25510 7.33824 7.45066 7.62890 7.75983 7.87756 8.04341 8.19666 8.35437 8.58851 9.00155 9.54725 11.01243 Molecular weight = 193.12amu Principal moments of inertia in cm(-1) A = 0.034559 B = 0.014229 C = 0.011563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.023370 B = 1967.305351 C = 2420.881905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.073 4.073 3 C -0.120 4.120 4 C 0.094 3.906 5 H 0.064 0.936 6 C -0.503 4.503 7 H 0.056 0.944 8 C 0.069 3.931 9 N -0.890 5.890 10 Si 0.888 3.112 11 H -0.275 1.275 12 H -0.288 1.288 13 H -0.278 1.278 14 C 0.092 3.908 15 C -0.236 4.236 16 C -0.203 4.203 17 C -0.057 4.057 18 N -0.559 5.559 19 H 0.407 0.593 20 H 0.042 0.958 21 H 0.035 0.965 22 H 0.050 0.950 23 H 0.051 0.949 24 H 0.057 0.943 25 H 0.017 0.983 26 H 0.057 0.943 27 H 0.262 0.738 28 H 0.122 0.878 29 H 0.119 0.881 30 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.211 -3.606 -1.617 5.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.092 4.092 3 C -0.177 4.177 4 C 0.075 3.925 5 H 0.082 0.918 6 C -0.541 4.541 7 H 0.074 0.926 8 C -0.133 4.133 9 N -0.528 5.528 10 Si 0.715 3.285 11 H -0.200 1.200 12 H -0.213 1.213 13 H -0.204 1.204 14 C -0.023 4.023 15 C -0.259 4.259 16 C -0.229 4.229 17 C -0.187 4.187 18 N -0.153 5.153 19 H 0.243 0.757 20 H 0.061 0.939 21 H 0.054 0.946 22 H 0.069 0.931 23 H 0.069 0.931 24 H 0.076 0.924 25 H 0.036 0.964 26 H 0.076 0.924 27 H 0.071 0.929 28 H 0.140 0.860 29 H 0.137 0.863 30 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -4.194 -3.421 -1.343 5.576 hybrid contribution 1.087 0.085 0.390 1.158 sum -3.106 -3.335 -0.953 4.656 Atomic orbital electron populations 1.21938 0.98023 1.00699 0.99713 1.21090 0.92326 0.96501 0.99299 1.21563 1.01343 0.95430 0.99383 1.17713 0.95401 0.83743 0.95653 0.91819 1.20959 0.90165 1.12525 1.30471 0.92620 1.24909 0.97952 0.95875 0.94520 1.69903 1.35576 1.19279 1.28061 0.86724 0.85957 0.77564 0.78231 1.20037 1.21348 1.20366 1.21471 0.98913 0.96689 0.85212 1.20464 1.13354 0.94300 0.97794 1.20721 1.09796 0.98398 0.93957 1.21466 1.12422 0.88943 0.95824 1.42043 1.53192 1.11071 1.09028 0.75734 0.93853 0.94631 0.93109 0.93058 0.92370 0.96366 0.92409 0.92855 0.85999 0.86324 0.83554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.83 8.94 37.16 0.33 -2.49 16 2 C -0.07 -1.59 2.15 -90.62 -0.20 -1.79 16 3 C -0.12 -2.66 8.15 37.16 0.30 -2.35 16 4 C 0.09 2.27 2.01 -92.92 -0.19 2.09 16 5 H 0.06 1.68 7.21 -51.93 -0.37 1.30 16 6 C -0.50 -13.37 7.49 -34.44 -0.26 -13.63 16 7 H 0.06 1.53 7.82 -52.49 -0.41 1.12 16 8 C 0.07 1.84 4.32 -17.82 -0.08 1.77 16 9 N -0.89 -24.23 12.02 55.43 0.67 -23.57 16 10 Si 0.89 20.94 29.54 -169.99 -5.02 15.92 16 11 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 12 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 13 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 14 C 0.09 2.04 5.19 -81.79 -0.42 1.62 16 15 C -0.24 -5.02 9.20 -39.77 -0.37 -5.39 16 16 C -0.20 -3.86 10.86 -39.78 -0.43 -4.29 16 17 C -0.06 -1.03 11.94 -16.75 -0.20 -1.23 16 18 N -0.56 -11.03 6.07 -9.12 -0.06 -11.08 16 19 H 0.41 7.26 8.96 -40.82 -0.37 6.89 16 20 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 21 H 0.03 0.61 8.14 -51.92 -0.42 0.19 16 22 H 0.05 0.98 6.65 -51.93 -0.35 0.63 16 23 H 0.05 1.13 7.17 -51.93 -0.37 0.76 16 24 H 0.06 1.39 6.82 -51.93 -0.35 1.03 16 25 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.06 1.36 7.77 -51.93 -0.40 0.96 16 27 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 28 H 0.12 2.53 7.30 -52.48 -0.38 2.15 16 29 H 0.12 1.95 8.06 -52.49 -0.42 1.53 16 30 H 0.15 2.08 8.06 -52.49 -0.42 1.65 16 LS Contribution 247.78 15.07 3.73 3.73 Total: -1.00 -27.74 247.78 -6.44 -34.18 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: -4.26 Total: 6.51 kcal Atomic # 6 Polarization: -24.20 SS G_CDS: -1.50 Total: -25.70 kcal Atomic # 7 Polarization: -35.26 SS G_CDS: 0.61 Total: -34.65 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -27.74 -6.44 -34.18 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259944081.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.970 kcal (2) G-P(sol) polarization free energy of solvation -27.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.178 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds