Wall clock time and date at job start Mon Mar 30 2020 02:19:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.46918 * 2 1 4 4 C 1.52997 * 109.47152 * 119.99518 * 2 1 3 5 5 H 1.08992 * 109.47418 * 301.74958 * 4 2 1 6 6 C 1.50701 * 109.47162 * 181.74270 * 4 2 1 7 7 H 1.08000 * 120.00480 * 275.48826 * 6 4 2 8 8 C 1.37886 * 119.99560 * 95.48719 * 6 4 2 9 9 N 1.31511 * 119.99833 * 6.81334 * 8 6 4 10 10 Si 1.86795 * 119.99888 * 186.81345 * 8 6 4 11 11 H 1.48497 * 109.47148 * 59.99559 * 10 8 6 12 12 H 1.48498 * 109.47297 * 180.02562 * 10 8 6 13 13 H 1.48503 * 109.46879 * 299.99975 * 10 8 6 14 14 C 1.50701 * 109.47032 * 61.74954 * 4 2 1 15 15 C 1.34855 * 125.88903 * 34.95139 * 14 4 2 16 16 C 1.40901 * 107.41338 * 179.80744 * 15 14 4 17 17 C 1.34846 * 107.41774 * 0.38458 * 16 15 14 18 18 N 1.36341 * 125.89280 * 215.00105 * 14 4 2 19 19 H 0.97000 * 125.63511 * 359.93599 * 18 14 4 20 20 H 1.08995 * 109.47702 * 299.99806 * 1 2 3 21 21 H 1.09008 * 109.47121 * 60.00432 * 1 2 3 22 22 H 1.09006 * 109.46748 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47368 * 240.00436 * 2 1 3 24 24 H 1.08999 * 109.46968 * 185.88046 * 3 2 1 25 25 H 1.09006 * 109.46862 * 305.87984 * 3 2 1 26 26 H 1.08994 * 109.47172 * 65.87492 * 3 2 1 27 27 H 0.97000 * 119.99753 * 180.02562 * 9 8 6 28 28 H 1.08003 * 126.29254 * 0.06553 * 15 14 4 29 29 H 1.07995 * 126.28768 * 180.24217 * 16 15 14 30 30 H 1.08000 * 125.89117 * 179.89003 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 1 1.6513 -0.2257 2.1389 6 6 3.5464 -0.6838 1.2711 7 1 4.1129 -1.4261 0.7285 8 6 4.2013 0.2982 1.9838 9 7 3.5189 1.1195 2.7514 10 14 6.0579 0.4618 1.8589 11 1 6.4376 0.7286 0.4483 12 1 6.5146 1.5853 2.7159 13 1 6.6976 -0.7988 2.3138 14 6 1.5734 -2.1539 1.2279 15 6 1.4338 -2.9235 0.1293 16 6 0.9813 -4.1881 0.5552 17 6 0.8535 -4.1404 1.8967 18 7 1.2186 -2.8954 2.3157 19 1 1.2253 -2.5880 3.2357 20 1 -0.3634 0.5138 0.8899 21 1 -0.3634 0.5138 -0.8901 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8934 -0.5138 -0.8900 24 1 3.1248 1.4444 -0.1053 25 1 1.5931 1.9858 -0.8327 26 1 1.7650 1.9251 0.9378 27 1 3.9797 1.8105 3.2525 28 1 1.6360 -2.6266 -0.8892 29 1 0.7727 -5.0385 -0.0770 30 1 0.5234 -4.9502 2.5305 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259944081.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:43 Heat of formation + Delta-G solvation = 7.428120 kcal Electronic energy + Delta-G solvation = -12295.972673 eV Core-core repulsion = 10283.568341 eV Total energy + Delta-G solvation = -2012.404331 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 193.116 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.72874 -37.46735 -34.10029 -31.50597 -30.82250 -28.31238 -27.13832 -24.78822 -21.56285 -21.20226 -19.94542 -18.48382 -18.09258 -16.40289 -15.26190 -15.05026 -14.55509 -14.44530 -14.16193 -13.72161 -13.49105 -13.06309 -12.86791 -12.77478 -12.71725 -12.42070 -11.89769 -11.69227 -11.44483 -11.02162 -10.93157 -10.48826 -9.49651 -8.60316 -8.05045 -6.15700 1.40357 1.41787 1.48422 1.75437 2.35070 2.49957 2.81052 3.20186 4.34732 4.51392 4.55679 4.56854 4.82975 4.86893 4.96274 5.04433 5.17615 5.24932 5.29499 5.42206 5.53978 5.65102 5.70507 5.79265 5.87443 5.94965 6.34926 6.47098 6.61502 6.94133 7.06447 7.48392 8.96360 Molecular weight = 193.12amu Principal moments of inertia in cm(-1) A = 0.034559 B = 0.014229 C = 0.011563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.023370 B = 1967.305351 C = 2420.881905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.073 4.073 3 C -0.110 4.110 4 C 0.100 3.900 5 H 0.034 0.966 6 C -0.515 4.515 7 H 0.039 0.961 8 C 0.033 3.967 9 N -0.911 5.911 10 Si 0.937 3.063 11 H -0.272 1.272 12 H -0.283 1.283 13 H -0.278 1.278 14 C 0.057 3.943 15 C -0.243 4.243 16 C -0.219 4.219 17 C -0.038 4.038 18 N -0.562 5.562 19 H 0.413 0.587 20 H 0.038 0.962 21 H 0.059 0.941 22 H 0.050 0.950 23 H 0.048 0.952 24 H 0.033 0.967 25 H 0.047 0.953 26 H 0.037 0.963 27 H 0.261 0.739 28 H 0.118 0.882 29 H 0.146 0.854 30 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.736 -4.652 -1.938 6.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.092 4.092 3 C -0.168 4.168 4 C 0.080 3.920 5 H 0.052 0.948 6 C -0.554 4.554 7 H 0.057 0.943 8 C -0.167 4.167 9 N -0.550 5.550 10 Si 0.763 3.237 11 H -0.197 1.197 12 H -0.208 1.208 13 H -0.204 1.204 14 C -0.057 4.057 15 C -0.267 4.267 16 C -0.244 4.244 17 C -0.168 4.168 18 N -0.157 5.157 19 H 0.250 0.750 20 H 0.057 0.943 21 H 0.078 0.922 22 H 0.069 0.931 23 H 0.066 0.934 24 H 0.052 0.948 25 H 0.066 0.934 26 H 0.056 0.944 27 H 0.071 0.929 28 H 0.136 0.864 29 H 0.163 0.837 30 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -4.720 -4.467 -1.664 6.708 hybrid contribution 1.219 0.343 0.489 1.358 sum -3.501 -4.124 -1.175 5.535 Atomic orbital electron populations 1.21793 0.95749 1.00990 1.00637 1.21030 0.94259 0.95839 0.98077 1.21449 0.99904 0.95969 0.99467 1.17515 0.93930 0.85296 0.95229 0.94820 1.21129 0.91811 1.12164 1.30255 0.94286 1.25444 1.01215 0.95663 0.94345 1.69999 1.36700 1.19656 1.28616 0.85940 0.82033 0.77437 0.78249 1.19730 1.20832 1.20391 1.21205 1.01606 0.96299 0.86598 1.20626 1.13129 0.95463 0.97435 1.21064 1.10136 0.98311 0.94910 1.22180 1.09686 0.88706 0.96184 1.42133 1.53012 1.11628 1.08945 0.75041 0.94301 0.92226 0.93122 0.93360 0.94757 0.93448 0.94376 0.92950 0.86351 0.83673 0.79289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.03 8.94 71.98 0.64 -4.38 16 2 C -0.07 -3.18 2.15 -10.79 -0.02 -3.20 16 3 C -0.11 -4.90 8.15 71.98 0.59 -4.31 16 4 C 0.10 4.88 2.01 -12.29 -0.02 4.86 16 5 H 0.03 1.82 7.21 -2.39 -0.02 1.81 16 6 C -0.52 -27.88 7.49 25.60 0.19 -27.69 16 7 H 0.04 2.19 7.82 -2.91 -0.02 2.17 16 8 C 0.03 1.78 4.32 84.66 0.37 2.14 16 9 N -0.91 -50.41 12.02 21.45 0.26 -50.16 16 10 Si 0.94 43.21 29.54 68.60 2.03 45.23 16 11 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 12 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 13 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 14 C 0.06 2.52 5.19 41.08 0.21 2.74 16 15 C -0.24 -10.08 9.20 22.14 0.20 -9.88 16 16 C -0.22 -7.75 10.86 22.14 0.24 -7.51 16 17 C -0.04 -1.25 11.94 83.21 0.99 -0.25 16 18 N -0.56 -21.43 6.07 -182.77 -1.11 -22.54 16 19 H 0.41 14.38 8.96 -92.71 -0.83 13.55 16 20 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 21 H 0.06 1.92 8.14 -2.38 -0.02 1.90 16 22 H 0.05 1.88 6.65 -2.38 -0.02 1.87 16 23 H 0.05 2.12 7.17 -2.39 -0.02 2.10 16 24 H 0.03 1.64 6.82 -2.39 -0.02 1.62 16 25 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 26 H 0.04 1.80 7.77 -2.39 -0.02 1.78 16 27 H 0.26 13.93 8.31 -92.71 -0.77 13.15 16 28 H 0.12 4.87 7.30 -2.91 -0.02 4.84 16 29 H 0.15 4.26 8.06 -2.91 -0.02 4.24 16 30 H 0.19 4.45 8.06 -2.91 -0.02 4.43 16 Total: -1.00 -58.85 247.78 4.85 -54.00 By element: Atomic # 1 Polarization: 20.66 SS G_CDS: 0.28 Total: 20.94 kcal Atomic # 6 Polarization: -50.87 SS G_CDS: 3.39 Total: -47.48 kcal Atomic # 7 Polarization: -71.85 SS G_CDS: -0.85 Total: -72.70 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.23 kcal Total: -58.85 4.85 -54.00 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259944081.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.432 kcal (2) G-P(sol) polarization free energy of solvation -58.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.004 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds