Wall clock time and date at job start Mon Mar 30 2020 02:37:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34329 * 124.95304 * 2 1 4 4 C 1.37008 * 115.31394 * 180.02562 * 3 2 1 5 5 C 1.37779 * 114.25560 * 359.97438 * 4 3 2 6 6 C 1.40554 * 125.38749 * 179.97438 * 5 4 3 7 7 C 1.38755 * 119.99565 * 186.49899 * 6 5 4 8 8 C 1.38522 * 120.00030 * 7.60509 * 7 6 5 9 9 H 1.07998 * 120.00623 * 37.22259 * 8 7 6 10 10 C 1.40509 * 119.99613 * 217.22340 * 8 7 6 11 11 N 1.30660 * 120.00436 * 359.97438 * 10 8 7 12 12 Si 1.86806 * 119.99839 * 180.02562 * 10 8 7 13 13 H 1.48499 * 109.47135 * 59.99646 * 12 10 8 14 14 H 1.48498 * 109.47150 * 180.02562 * 12 10 8 15 15 H 1.48506 * 109.46776 * 299.99705 * 12 10 8 16 16 S 1.75802 * 124.94700 * 180.34250 * 2 1 3 17 17 H 1.09001 * 109.47158 * 89.99837 * 1 2 3 18 18 H 1.09002 * 109.47234 * 210.00422 * 1 2 3 19 19 H 1.09004 * 109.46869 * 330.00630 * 1 2 3 20 20 H 1.08000 * 122.34225 * 0.05631 * 3 2 1 21 21 H 1.07995 * 122.87217 * 179.97438 * 4 3 2 22 22 H 1.08000 * 119.99944 * 6.50430 * 6 5 4 23 23 H 1.07999 * 119.99208 * 187.32301 * 7 6 5 24 24 H 0.96993 * 120.00376 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2766 1.1010 0.0000 4 6 3.6273 0.8716 -0.0006 5 6 3.9750 -0.4616 -0.0005 6 6 5.2892 -0.9601 -0.0015 7 6 5.5143 -2.3225 -0.1373 8 6 4.4604 -3.1729 -0.4290 9 1 3.6788 -2.8531 -1.1022 10 6 4.4084 -4.4516 0.1509 11 7 5.3542 -4.8389 0.9650 12 14 2.9876 -5.5988 -0.2430 13 1 2.9572 -5.8656 -1.7035 14 1 3.1657 -6.8774 0.4908 15 1 1.7102 -4.9648 0.1711 16 16 2.5141 -1.4410 -0.0086 17 1 -0.3633 0.0000 -1.0277 18 1 -0.3634 -0.8900 0.5139 19 1 -0.3633 0.8901 0.5138 20 1 1.8597 2.0973 0.0009 21 1 4.3571 1.6677 -0.0010 22 1 6.1238 -0.2826 0.1036 23 1 6.5119 -2.7192 -0.0200 24 1 5.3181 -5.7215 1.3656 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260218320.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:51 Heat of formation + Delta-G solvation = 2.142580 kcal Electronic energy + Delta-G solvation = -9671.497021 eV Core-core repulsion = 7868.064606 eV Total energy + Delta-G solvation = -1803.432415 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 194.046 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.24625 -36.76275 -34.18714 -31.57903 -28.50537 -25.85856 -23.49283 -21.60865 -20.20096 -18.25191 -17.37036 -16.42341 -15.74859 -14.91234 -14.57236 -14.43821 -13.97589 -13.58286 -13.27077 -13.01781 -12.78236 -12.51182 -12.22713 -12.15903 -11.56545 -11.43052 -10.82736 -10.34118 -9.01364 -8.95473 -8.46470 -6.46234 0.20079 1.25041 1.29648 1.37850 1.47725 1.75326 1.78669 2.11485 2.47653 3.09696 4.44543 4.61388 4.65736 4.87055 4.89322 4.97455 5.04030 5.17286 5.30815 5.49639 5.58478 5.87820 6.13297 6.16651 6.33074 6.60713 6.74232 8.01953 Molecular weight = 194.05amu Principal moments of inertia in cm(-1) A = 0.041944 B = 0.014553 C = 0.011146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.392157 B = 1923.571150 C = 2511.609955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C -0.328 4.328 3 C -0.110 4.110 4 C -0.294 4.294 5 C -0.043 4.043 6 C -0.363 4.363 7 C 0.065 3.935 8 C -0.449 4.449 9 H 0.103 0.897 10 C 0.047 3.953 11 N -0.807 5.807 12 Si 0.964 3.036 13 H -0.247 1.247 14 H -0.255 1.255 15 H -0.249 1.249 16 S 0.105 5.895 17 H 0.068 0.932 18 H 0.058 0.942 19 H 0.073 0.927 20 H 0.131 0.869 21 H 0.117 0.883 22 H 0.093 0.907 23 H 0.072 0.928 24 H 0.304 0.696 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.828 -0.171 -1.240 6.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.443 4.443 3 C -0.138 4.138 4 C -0.320 4.320 5 C -0.161 4.161 6 C -0.388 4.388 7 C 0.041 3.959 8 C -0.481 4.481 9 H 0.120 0.880 10 C -0.174 4.174 11 N -0.430 5.430 12 Si 0.782 3.218 13 H -0.170 1.170 14 H -0.179 1.179 15 H -0.173 1.173 16 S 0.372 5.628 17 H 0.086 0.914 18 H 0.077 0.923 19 H 0.092 0.908 20 H 0.149 0.851 21 H 0.135 0.865 22 H 0.111 0.889 23 H 0.090 0.910 24 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -7.119 -1.770 -1.072 7.414 hybrid contribution 0.572 1.290 0.064 1.412 sum -6.547 -0.480 -1.007 6.642 Atomic orbital electron populations 1.20068 0.87381 1.02194 1.01932 1.25450 1.01102 0.98881 1.18823 1.19679 0.92652 0.98531 1.02981 1.20336 0.96366 0.94535 1.20801 1.22362 0.96671 0.95811 1.01230 1.19985 0.92480 0.95723 1.30584 1.20721 0.96818 0.92038 0.86302 1.19868 1.07706 0.98319 1.22198 0.87995 1.27037 0.99526 0.98616 0.92199 1.69564 1.31869 1.21357 1.20185 0.85468 0.78261 0.77172 0.80900 1.17014 1.17877 1.17284 1.84663 0.96242 1.07659 1.74256 0.91352 0.92290 0.90794 0.85137 0.86456 0.88917 0.90950 0.88436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.79 10.37 71.24 0.74 -1.05 14 2 C -0.33 -13.49 6.52 24.79 0.16 -13.33 14 3 C -0.11 -4.60 10.00 21.09 0.21 -4.39 14 4 C -0.29 -13.74 10.19 21.87 0.22 -13.52 14 5 C -0.04 -2.19 6.11 22.73 0.14 -2.05 14 6 C -0.36 -18.93 10.01 22.96 0.23 -18.70 14 7 C 0.07 3.44 9.18 22.46 0.21 3.64 14 8 C -0.45 -22.57 6.49 22.89 0.15 -22.42 14 9 H 0.10 5.11 5.40 -15.87 -0.09 5.03 14 10 C 0.05 2.20 5.51 85.42 0.47 2.67 14 11 N -0.81 -38.71 13.16 21.93 0.29 -38.43 14 12 Si 0.96 34.90 29.57 68.60 2.03 36.93 14 13 H -0.25 -8.53 7.11 99.48 0.71 -7.82 14 14 H -0.26 -8.48 7.11 99.48 0.71 -7.77 14 15 H -0.25 -8.98 7.11 99.48 0.71 -8.28 14 16 S 0.10 4.87 18.50 -56.49 -1.04 3.82 14 17 H 0.07 1.93 8.14 -2.39 -0.02 1.91 14 18 H 0.06 1.75 8.14 -2.39 -0.02 1.73 14 19 H 0.07 2.00 8.14 -2.38 -0.02 1.98 14 20 H 0.13 4.64 8.06 -2.91 -0.02 4.61 14 21 H 0.12 5.14 8.06 -2.91 -0.02 5.12 14 22 H 0.09 4.63 8.06 -2.91 -0.02 4.60 14 23 H 0.07 3.81 7.94 -2.91 -0.02 3.79 14 24 H 0.30 12.93 8.29 -92.71 -0.77 12.16 14 Total: -1.00 -54.67 227.13 4.91 -49.76 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: 1.11 Total: 17.06 kcal Atomic # 6 Polarization: -71.67 SS G_CDS: 2.53 Total: -69.14 kcal Atomic # 7 Polarization: -38.71 SS G_CDS: 0.29 Total: -38.43 kcal Atomic # 14 Polarization: 34.90 SS G_CDS: 2.03 Total: 36.93 kcal Atomic # 16 Polarization: 4.87 SS G_CDS: -1.04 Total: 3.82 kcal Total: -54.67 4.91 -49.76 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260218320.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.901 kcal (2) G-P(sol) polarization free energy of solvation -54.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds