Wall clock time and date at job start Mon Mar 30 2020 01:46:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38686 * 120.40509 * 2 1 4 4 C 1.38628 * 118.55699 * 179.97438 * 3 2 1 5 5 N 1.32260 * 119.19696 * 0.02562 * 4 3 2 6 6 C 1.32515 * 120.74110 * 359.97438 * 5 4 3 7 7 N 1.38440 * 119.21727 * 180.02562 * 6 5 4 8 8 C 1.46498 * 120.00352 * 179.97438 * 7 6 5 9 9 C 1.36988 * 119.99642 * 0.02562 * 7 6 5 10 10 H 1.08010 * 120.00019 * 20.93176 * 9 7 6 11 11 C 1.38831 * 120.00086 * 200.92965 * 9 7 6 12 12 N 1.31541 * 119.99817 * 14.06786 * 11 9 7 13 13 Si 1.86802 * 119.99933 * 194.06567 * 11 9 7 14 14 H 1.48501 * 109.47319 * 85.01953 * 13 11 9 15 15 H 1.48501 * 109.46879 * 205.01943 * 13 11 9 16 16 H 1.48499 * 109.47138 * 325.01687 * 13 11 9 17 17 N 1.32216 * 120.40216 * 179.72888 * 2 1 3 18 18 H 1.08993 * 109.47288 * 89.99333 * 1 2 3 19 19 H 1.08999 * 109.47136 * 210.00197 * 1 2 3 20 20 H 1.09000 * 109.46586 * 329.99573 * 1 2 3 21 21 H 1.07999 * 120.71821 * 359.95828 * 3 2 1 22 22 H 1.07998 * 120.40228 * 179.97438 * 4 3 2 23 23 H 1.09004 * 109.46765 * 94.56496 * 8 7 6 24 24 H 1.09000 * 109.47033 * 214.56027 * 8 7 6 25 25 H 1.08994 * 109.47212 * 334.56859 * 8 7 6 26 26 H 0.96995 * 119.99811 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2089 1.1961 0.0000 4 6 3.5945 1.1514 0.0005 5 7 4.2021 -0.0233 0.0005 6 6 3.5016 -1.1482 0.0005 7 7 4.1701 -2.3605 0.0010 8 6 3.4129 -3.6146 0.0016 9 6 5.5397 -2.3874 0.0021 10 1 6.0966 -1.5245 0.3367 11 6 6.2121 -3.5238 -0.4269 12 7 5.5660 -4.4604 -1.0868 13 14 8.0343 -3.7226 -0.0669 14 1 8.2106 -4.3036 1.2883 15 1 8.6424 -4.6266 -1.0760 16 1 8.6984 -2.3957 -0.1269 17 7 2.1761 -1.1403 0.0054 18 1 -0.3633 0.0001 -1.0276 19 1 -0.3633 -0.8900 0.5139 20 1 -0.3632 0.8900 0.5139 21 1 1.6874 2.1418 -0.0007 22 1 4.1708 2.0648 0.0001 23 1 3.2951 -3.9684 -1.0227 24 1 3.9496 -4.3629 0.5849 25 1 2.4306 -3.4458 0.4428 26 1 6.0358 -5.2542 -1.3869 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260311420.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:29 Heat of formation + Delta-G solvation = 64.044636 kcal Electronic energy + Delta-G solvation = -11765.911771 eV Core-core repulsion = 9652.422173 eV Total energy + Delta-G solvation = -2113.489598 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.091 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.65051 -36.12095 -33.16142 -32.19794 -30.06863 -27.75812 -26.27099 -24.41540 -21.93140 -20.98935 -17.45198 -16.49000 -15.79217 -14.75196 -14.36097 -14.16494 -13.49347 -13.09657 -12.98644 -12.33403 -12.00898 -11.73221 -11.40786 -11.23151 -10.83557 -10.43516 -10.38751 -9.67607 -9.53993 -9.40358 -8.72762 -7.83228 -7.12178 -6.42243 -3.81621 2.29345 2.36603 3.17471 3.18769 3.23638 3.96508 4.52367 4.75053 5.17768 5.26496 5.44330 5.83635 5.99438 6.07301 6.22927 6.25500 6.52824 6.66808 6.84570 6.92808 7.26563 7.40077 7.50318 7.93882 8.37050 8.49499 9.11220 9.31204 9.85784 10.57386 Molecular weight = 193.09amu Principal moments of inertia in cm(-1) A = 0.062629 B = 0.010846 C = 0.009442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 446.966405 B = 2580.875545 C = 2964.682632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.214 3.786 3 C -0.370 4.370 4 C 0.193 3.807 5 N -0.575 5.575 6 C 0.498 3.502 7 N -0.393 5.393 8 C 0.130 3.870 9 C -0.288 4.288 10 H 0.110 0.890 11 C 0.025 3.975 12 N -0.871 5.871 13 Si 0.936 3.064 14 H -0.275 1.275 15 H -0.283 1.283 16 H -0.267 1.267 17 N -0.595 5.595 18 H 0.072 0.928 19 H 0.070 0.930 20 H 0.068 0.932 21 H 0.117 0.883 22 H 0.144 0.856 23 H 0.060 0.940 24 H 0.062 0.938 25 H 0.045 0.955 26 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.651 4.862 1.862 6.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.061 3.939 3 C -0.401 4.401 4 C 0.020 3.980 5 N -0.300 5.300 6 C 0.146 3.854 7 N -0.085 5.085 8 C -0.014 4.014 9 C -0.418 4.418 10 H 0.127 0.873 11 C -0.180 4.180 12 N -0.507 5.507 13 Si 0.762 3.238 14 H -0.201 1.201 15 H -0.208 1.208 16 H -0.191 1.191 17 N -0.322 5.322 18 H 0.091 0.909 19 H 0.089 0.911 20 H 0.087 0.913 21 H 0.135 0.865 22 H 0.161 0.839 23 H 0.078 0.922 24 H 0.081 0.919 25 H 0.064 0.936 26 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.886 3.318 1.767 5.406 hybrid contribution 0.439 0.681 -0.007 0.810 sum -3.446 3.998 1.760 5.564 Atomic orbital electron populations 1.20617 0.89983 1.02482 1.02340 1.21006 0.95718 0.88313 0.88867 1.21654 0.96198 0.98547 1.23736 1.22555 0.91742 0.94914 0.88830 1.67879 1.40385 0.97615 1.24120 1.19258 0.84441 0.86869 0.94869 1.42354 1.05374 1.00583 1.60144 1.21438 0.93263 0.84546 1.02115 1.19915 0.79572 1.02114 1.40205 0.87281 1.25479 1.00944 0.96209 0.95374 1.70117 1.37406 1.09574 1.33641 0.85778 0.81213 0.78653 0.78143 1.20132 1.20819 1.19139 1.67585 1.08209 1.30112 1.26288 0.90946 0.91110 0.91262 0.86528 0.83914 0.92180 0.91891 0.93611 0.91900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.42 10.22 36.01 0.37 -1.05 15 2 C 0.21 4.29 6.82 -82.26 -0.56 3.73 15 3 C -0.37 -6.96 9.85 -39.27 -0.39 -7.35 15 4 C 0.19 3.94 11.30 -17.22 -0.19 3.75 15 5 N -0.58 -14.43 9.21 -13.90 -0.13 -14.56 15 6 C 0.50 13.12 8.13 -322.65 -2.62 10.50 15 7 N -0.39 -10.76 3.11 -124.44 -0.39 -11.15 15 8 C 0.13 3.25 8.75 59.85 0.52 3.78 15 9 C -0.29 -8.02 9.31 -15.03 -0.14 -8.16 15 10 H 0.11 3.06 7.30 -52.48 -0.38 2.68 15 11 C 0.03 0.66 5.08 -17.46 -0.09 0.57 15 12 N -0.87 -23.50 10.65 55.49 0.59 -22.91 15 13 Si 0.94 20.46 29.58 -169.99 -5.03 15.43 15 14 H -0.28 -5.91 7.11 56.52 0.40 -5.51 15 15 H -0.28 -6.09 7.11 56.52 0.40 -5.69 15 16 H -0.27 -5.79 7.11 56.52 0.40 -5.39 15 17 N -0.59 -14.25 8.98 -10.12 -0.09 -14.34 15 18 H 0.07 0.97 8.14 -51.93 -0.42 0.54 15 19 H 0.07 1.02 8.14 -51.93 -0.42 0.60 15 20 H 0.07 0.83 8.10 -51.93 -0.42 0.41 15 21 H 0.12 1.78 8.06 -52.49 -0.42 1.35 15 22 H 0.14 2.34 8.06 -52.49 -0.42 1.91 15 23 H 0.06 1.57 7.42 -51.93 -0.39 1.18 15 24 H 0.06 1.58 7.19 -51.93 -0.37 1.20 15 25 H 0.05 1.06 7.19 -51.93 -0.37 0.69 15 26 H 0.27 6.85 8.31 -40.82 -0.34 6.51 15 LS Contribution 230.21 15.07 3.47 3.47 Total: -1.00 -30.35 230.21 -7.44 -37.79 By element: Atomic # 1 Polarization: 3.26 SS G_CDS: -2.76 Total: 0.50 kcal Atomic # 6 Polarization: 8.87 SS G_CDS: -3.10 Total: 5.77 kcal Atomic # 7 Polarization: -62.94 SS G_CDS: -0.02 Total: -62.95 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.03 Total: 15.43 kcal Total LS contribution 3.47 Total: 3.47 kcal Total: -30.35 -7.44 -37.79 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260311420.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.831 kcal (2) G-P(sol) polarization free energy of solvation -30.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.786 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds