Wall clock time and date at job start Mon Mar 30 2020 02:02:33
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 H 1.08997 * 109.47563 * 2 1
4 4 C 1.50695 * 109.47448 * 120.00368 * 2 1 3
5 5 H 1.08004 * 120.00546 * 120.27461 * 4 2 1
6 6 C 1.37885 * 119.99721 * 299.99712 * 4 2 1
7 7 N 1.31514 * 120.00035 * 0.02562 * 6 4 2
8 8 Si 1.86803 * 119.99853 * 179.97438 * 6 4 2
9 9 H 1.48500 * 109.46986 * 90.00256 * 8 6 4
10 10 H 1.48496 * 109.47029 * 210.00273 * 8 6 4
11 11 H 1.48499 * 109.47352 * 330.00102 * 8 6 4
12 12 C 1.50707 * 109.47019 * 240.00372 * 2 1 3
13 13 C 1.38630 * 120.39652 * 324.72023 * 12 2 1
14 14 C 1.38582 * 118.55620 * 179.71589 * 13 12 2
15 15 N 1.32299 * 119.19684 * 0.55779 * 14 13 12
16 16 C 1.32482 * 120.74079 * 359.72845 * 15 14 13
17 17 N 1.38398 * 119.21853 * 179.97438 * 16 15 14
18 18 N 1.32253 * 120.40573 * 145.00091 * 12 2 1
19 19 H 1.09002 * 109.47168 * 180.02562 * 1 2 3
20 20 H 1.08998 * 109.46887 * 300.00064 * 1 2 3
21 21 H 1.09005 * 109.47504 * 59.99875 * 1 2 3
22 22 H 0.97000 * 119.99706 * 179.97438 * 7 6 4
23 23 H 1.07998 * 120.72440 * 359.97438 * 13 12 2
24 24 H 1.08000 * 120.40399 * 180.28291 * 14 13 12
25 25 H 0.96999 * 120.00542 * 179.97438 * 17 16 15
26 26 H 0.97001 * 119.99953 * 359.97438 * 17 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 6 2.0323 -0.7104 1.2304
5 1 2.6570 -1.5860 1.1313
6 6 1.6993 -0.2394 2.4827
7 7 0.9428 0.8296 2.6034
8 14 2.3215 -1.1204 4.0079
9 1 3.6298 -0.5460 4.4123
10 1 1.3433 -0.9494 5.1120
11 1 2.4859 -2.5663 3.7119
12 6 2.0323 -0.7104 -1.2306
13 6 1.3458 -1.8018 -1.7398
14 6 1.8384 -2.4227 -2.8766
15 7 2.9485 -1.9651 -3.4322
16 6 3.5840 -0.9232 -2.9168
17 7 4.7430 -0.4711 -3.5233
18 7 3.1363 -0.3036 -1.8345
19 1 -0.3633 -1.0277 0.0005
20 1 -0.3633 0.5138 0.8900
21 1 -0.3634 0.5139 -0.8900
22 1 0.7082 1.1608 3.4845
23 1 0.4443 -2.1579 -1.2635
24 1 1.3248 -3.2725 -3.3014
25 1 5.2173 0.2910 -3.1558
26 1 5.0811 -0.9165 -4.3159
RHF calculation, no. of doubly occupied orbitals= 35
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000260338237.mol2 26
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:02:33
Heat of formation + Delta-G solvation = 42.643819 kcal
Electronic energy + Delta-G solvation = -11669.926889 eV
Core-core repulsion = 9555.509281 eV
Total energy + Delta-G solvation = -2114.417607 eV
No. of doubly occupied orbitals = 35
Molecular weight
(most abundant/longest-lived isotopes) = 193.091 amu
Computer time = 0.16 seconds
Orbital eigenvalues (eV)
-40.19655 -35.37195 -33.91339 -32.56855 -30.64496 -28.62075 -25.25872 -23.74605
-22.90790 -20.20079 -17.45923 -16.80613 -16.12530 -15.07113 -14.96476 -14.55011
-14.29583 -13.45641 -12.84782 -12.38985 -11.53764 -10.98082 -10.93470 -10.55785
-10.52836 -10.37955 -10.05888 -9.93758 -9.76763 -8.85434 -8.46700 -8.26622
-7.69759 -6.06616 -4.13443 1.89846 2.02049 3.28979 3.35225 3.39233
3.67980 4.37635 4.69527 4.88194 5.25446 5.41774 5.66258 6.00185
6.17805 6.56253 6.79461 6.84483 7.06357 7.20420 7.50249 7.59746
7.69247 7.81300 7.99493 8.11370 8.27495 8.86636 9.07974 9.50415
10.99593
Molecular weight = 193.09amu
Principal moments of inertia in cm(-1)
A = 0.048244 B = 0.010518 C = 0.009971
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 580.248374 B = 2661.440524 C = 2807.477948
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.134 4.134
2 C 0.081 3.919
3 H 0.050 0.950
4 C -0.503 4.503
5 H 0.055 0.945
6 C 0.065 3.935
7 N -0.888 5.888
8 Si 0.898 3.102
9 H -0.280 1.280
10 H -0.285 1.285
11 H -0.274 1.274
12 C 0.262 3.738
13 C -0.283 4.283
14 C 0.170 3.830
15 N -0.597 5.597
16 C 0.551 3.449
17 N -0.833 5.833
18 N -0.570 5.570
19 H 0.034 0.966
20 H 0.091 0.909
21 H 0.011 0.989
22 H 0.263 0.737
23 H 0.142 0.858
24 H 0.156 0.844
25 H 0.410 0.590
26 H 0.406 0.594
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.738 -3.329 -7.807 8.663
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.193 4.193
2 C 0.062 3.938
3 H 0.068 0.932
4 C -0.542 4.542
5 H 0.073 0.927
6 C -0.137 4.137
7 N -0.526 5.526
8 Si 0.726 3.274
9 H -0.206 1.206
10 H -0.211 1.211
11 H -0.199 1.199
12 C 0.115 3.885
13 C -0.308 4.308
14 C 0.006 3.994
15 N -0.321 5.321
16 C 0.192 3.808
17 N -0.382 5.382
18 N -0.293 5.293
19 H 0.053 0.947
20 H 0.109 0.891
21 H 0.030 0.970
22 H 0.073 0.927
23 H 0.160 0.840
24 H 0.174 0.826
25 H 0.240 0.760
26 H 0.236 0.764
Dipole moment (debyes) X Y Z Total
from point charges 2.452 -2.905 -8.097 8.945
hybrid contribution -0.054 -0.692 1.049 1.258
sum 2.399 -3.597 -7.048 8.269
Atomic orbital electron populations
1.21851 0.96897 0.99715 1.00795 1.17931 0.92890 0.96320 0.86702
0.93156 1.20839 1.31493 1.12564 0.89328 0.92690 1.24904 0.94941
0.94967 0.98881 1.69878 1.36370 1.22706 1.23651 0.86493 0.78634
0.80014 0.82297 1.20587 1.21054 1.19885 1.22433 0.85043 0.89027
0.91969 1.22495 1.05804 1.01700 1.00799 1.22711 0.89570 0.96037
0.91092 1.67738 1.12195 1.15871 1.36310 1.19431 0.87663 0.86657
0.87008 1.41573 1.25459 1.37783 1.33388 1.67877 1.17145 1.34196
1.10104 0.94670 0.89053 0.96963 0.92747 0.84026 0.82636 0.75983
0.76412
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -3.14 8.42 37.15 0.31 -2.83 15
2 C 0.08 2.06 2.65 -92.93 -0.25 1.81 15
3 H 0.05 1.41 8.14 -51.93 -0.42 0.99 15
4 C -0.50 -13.85 8.55 -34.44 -0.29 -14.14 15
5 H 0.05 1.54 7.74 -52.48 -0.41 1.13 15
6 C 0.06 1.77 5.30 -17.82 -0.09 1.68 15
7 N -0.89 -24.81 11.32 55.43 0.63 -24.18 15
8 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 15
9 H -0.28 -6.60 7.11 56.52 0.40 -6.19 15
10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 15
11 H -0.27 -6.41 7.11 56.52 0.40 -6.01 15
12 C 0.26 6.05 5.75 -82.26 -0.47 5.58 15
13 C -0.28 -5.62 9.25 -39.31 -0.36 -5.98 15
14 C 0.17 2.99 11.30 -17.22 -0.19 2.80 15
15 N -0.60 -11.23 10.46 -13.93 -0.15 -11.37 15
16 C 0.55 10.80 8.67 -322.82 -2.80 8.00 15
17 N -0.83 -12.20 9.07 29.76 0.27 -11.93 15
18 N -0.57 -12.86 10.39 -10.15 -0.11 -12.97 15
19 H 0.03 0.76 6.58 -51.93 -0.34 0.42 15
20 H 0.09 2.33 6.07 -51.93 -0.32 2.02 15
21 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 15
22 H 0.26 6.97 8.31 -40.82 -0.34 6.63 15
23 H 0.14 2.60 6.44 -52.49 -0.34 2.27 15
24 H 0.16 2.06 8.06 -52.49 -0.42 1.64 15
25 H 0.41 5.37 8.94 -40.82 -0.37 5.01 15
26 H 0.41 4.80 8.94 -40.82 -0.37 4.44 15
LS Contribution 229.36 15.07 3.46 3.46
Total: -1.00 -30.36 229.36 -7.61 -37.96
By element:
Atomic # 1 Polarization: 8.51 SS G_CDS: -2.53 Total: 5.97 kcal
Atomic # 6 Polarization: 1.07 SS G_CDS: -4.15 Total: -3.08 kcal
Atomic # 7 Polarization: -61.10 SS G_CDS: 0.65 Total: -60.46 kcal
Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal
Total LS contribution 3.46 Total: 3.46 kcal
Total: -30.36 -7.61 -37.96 kcal
The number of atoms in the molecule is 26
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260338237.mol2 26
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 80.608 kcal
(2) G-P(sol) polarization free energy of solvation -30.357 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.250 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.606 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.964 kcal
(6) G-S(sol) free energy of system = (1) + (5) 42.644 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.16 seconds