Wall clock time and date at job start Mon Mar 30 2020 02:02:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.47563 * 2 1 4 4 C 1.50695 * 109.47448 * 120.00368 * 2 1 3 5 5 H 1.08004 * 120.00546 * 120.27461 * 4 2 1 6 6 C 1.37885 * 119.99721 * 299.99712 * 4 2 1 7 7 N 1.31514 * 120.00035 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99853 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46986 * 90.00256 * 8 6 4 10 10 H 1.48496 * 109.47029 * 210.00273 * 8 6 4 11 11 H 1.48499 * 109.47352 * 330.00102 * 8 6 4 12 12 C 1.50707 * 109.47019 * 240.00372 * 2 1 3 13 13 C 1.38630 * 120.39652 * 324.72023 * 12 2 1 14 14 C 1.38582 * 118.55620 * 179.71589 * 13 12 2 15 15 N 1.32299 * 119.19684 * 0.55779 * 14 13 12 16 16 C 1.32482 * 120.74079 * 359.72845 * 15 14 13 17 17 N 1.38398 * 119.21853 * 179.97438 * 16 15 14 18 18 N 1.32253 * 120.40573 * 145.00091 * 12 2 1 19 19 H 1.09002 * 109.47168 * 180.02562 * 1 2 3 20 20 H 1.08998 * 109.46887 * 300.00064 * 1 2 3 21 21 H 1.09005 * 109.47504 * 59.99875 * 1 2 3 22 22 H 0.97000 * 119.99706 * 179.97438 * 7 6 4 23 23 H 1.07998 * 120.72440 * 359.97438 * 13 12 2 24 24 H 1.08000 * 120.40399 * 180.28291 * 14 13 12 25 25 H 0.96999 * 120.00542 * 179.97438 * 17 16 15 26 26 H 0.97001 * 119.99953 * 359.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6570 -1.5860 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.6298 -0.5460 4.4123 10 1 1.3433 -0.9494 5.1120 11 1 2.4859 -2.5663 3.7119 12 6 2.0323 -0.7104 -1.2306 13 6 1.3458 -1.8018 -1.7398 14 6 1.8384 -2.4227 -2.8766 15 7 2.9485 -1.9651 -3.4322 16 6 3.5840 -0.9232 -2.9168 17 7 4.7430 -0.4711 -3.5233 18 7 3.1363 -0.3036 -1.8345 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5139 -0.8900 22 1 0.7082 1.1608 3.4845 23 1 0.4443 -2.1579 -1.2635 24 1 1.3248 -3.2725 -3.3014 25 1 5.2173 0.2910 -3.1558 26 1 5.0811 -0.9165 -4.3159 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260338237.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:33 Heat of formation + Delta-G solvation = 23.017890 kcal Electronic energy + Delta-G solvation = -11670.777933 eV Core-core repulsion = 9555.509281 eV Total energy + Delta-G solvation = -2115.268651 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.091 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.71950 -37.10125 -35.40735 -34.33598 -32.43113 -30.20457 -27.29103 -25.45257 -24.40352 -21.97877 -18.91565 -18.54240 -17.96157 -16.67683 -16.40259 -16.29681 -15.84767 -14.95109 -14.72003 -14.13937 -13.49363 -12.87930 -12.82621 -12.37742 -12.28613 -11.91008 -11.82426 -11.71313 -11.52134 -10.76273 -10.50858 -9.87743 -9.11138 -8.13759 -6.28539 0.40762 0.45444 1.42410 1.43304 1.53808 2.35430 2.42909 3.13049 3.14852 3.43365 3.97980 4.23147 4.49259 4.62671 4.91002 4.98685 5.10392 5.21657 5.52673 5.61908 5.75793 5.98799 6.18147 6.22962 6.51998 6.60100 6.75989 7.38611 7.62563 8.91547 Molecular weight = 193.09amu Principal moments of inertia in cm(-1) A = 0.048244 B = 0.010518 C = 0.009971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.248374 B = 2661.440524 C = 2807.477948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.082 3.918 3 H 0.009 0.991 4 C -0.521 4.521 5 H 0.043 0.957 6 C 0.021 3.979 7 N -0.912 5.912 8 Si 0.959 3.041 9 H -0.279 1.279 10 H -0.275 1.275 11 H -0.269 1.269 12 C 0.234 3.766 13 C -0.291 4.291 14 C 0.186 3.814 15 N -0.595 5.595 16 C 0.540 3.460 17 N -0.812 5.812 18 N -0.605 5.605 19 H 0.049 0.951 20 H 0.066 0.934 21 H 0.027 0.973 22 H 0.265 0.735 23 H 0.154 0.846 24 H 0.207 0.793 25 H 0.417 0.583 26 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.877 -4.892 -8.615 10.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.062 3.938 3 H 0.027 0.973 4 C -0.560 4.560 5 H 0.061 0.939 6 C -0.179 4.179 7 N -0.550 5.550 8 Si 0.785 3.215 9 H -0.205 1.205 10 H -0.200 1.200 11 H -0.194 1.194 12 C 0.088 3.912 13 C -0.316 4.316 14 C 0.021 3.979 15 N -0.320 5.320 16 C 0.180 3.820 17 N -0.363 5.363 18 N -0.329 5.329 19 H 0.068 0.932 20 H 0.085 0.915 21 H 0.046 0.954 22 H 0.075 0.925 23 H 0.171 0.829 24 H 0.223 0.777 25 H 0.249 0.751 26 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 2.622 -4.454 -8.931 10.318 hybrid contribution -0.043 -0.195 1.200 1.216 sum 2.579 -4.648 -7.731 9.382 Atomic orbital electron populations 1.21664 0.95592 1.00440 1.00273 1.17738 0.93984 0.94173 0.87874 0.97333 1.21032 1.31705 1.12514 0.90755 0.93875 1.25655 0.95020 0.95619 1.01584 1.69994 1.36967 1.23657 1.24400 0.85537 0.78110 0.78985 0.78914 1.20507 1.20033 1.19394 1.22126 0.86406 0.90659 0.92016 1.22591 1.06179 1.01040 1.01819 1.23476 0.88641 0.96174 0.89611 1.67924 1.12586 1.15404 1.36050 1.19796 0.88721 0.86842 0.86593 1.41558 1.23827 1.37620 1.33286 1.67753 1.17733 1.35704 1.11724 0.93183 0.91546 0.95355 0.92523 0.82852 0.77651 0.75130 0.74572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.73 8.42 71.98 0.61 -5.13 15 2 C 0.08 4.27 2.65 -12.29 -0.03 4.24 15 3 H 0.01 0.51 8.14 -2.39 -0.02 0.49 15 4 C -0.52 -29.21 8.55 25.60 0.22 -28.99 15 5 H 0.04 2.45 7.74 -2.91 -0.02 2.43 15 6 C 0.02 1.15 5.30 84.66 0.45 1.60 15 7 N -0.91 -51.78 11.32 21.45 0.24 -51.54 15 8 Si 0.96 43.45 29.54 68.60 2.03 45.48 15 9 H -0.28 -12.54 7.11 99.48 0.71 -11.83 15 10 H -0.28 -11.96 7.11 99.48 0.71 -11.25 15 11 H -0.27 -11.91 7.11 99.48 0.71 -11.20 15 12 C 0.23 10.82 5.75 42.59 0.25 11.07 15 13 C -0.29 -11.07 9.25 22.45 0.21 -10.86 15 14 C 0.19 5.94 11.30 84.70 0.96 6.89 15 15 N -0.60 -20.76 10.46 -197.99 -2.07 -22.83 15 16 C 0.54 20.35 8.67 261.49 2.27 22.62 15 17 N -0.81 -22.33 9.07 -59.75 -0.54 -22.87 15 18 N -0.60 -27.30 10.39 -186.03 -1.93 -29.23 15 19 H 0.05 2.15 6.58 -2.39 -0.02 2.13 15 20 H 0.07 3.46 6.07 -2.39 -0.01 3.44 15 21 H 0.03 1.19 8.14 -2.38 -0.02 1.17 15 22 H 0.27 14.22 8.31 -92.71 -0.77 13.45 15 23 H 0.15 5.33 6.44 -2.91 -0.02 5.31 15 24 H 0.21 4.37 8.06 -2.91 -0.02 4.34 15 25 H 0.42 10.37 8.94 -92.71 -0.83 9.54 15 26 H 0.42 8.92 8.94 -92.71 -0.83 8.09 15 Total: -1.00 -65.63 229.36 2.20 -63.43 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: -0.44 Total: 16.12 kcal Atomic # 6 Polarization: -3.48 SS G_CDS: 4.92 Total: 1.44 kcal Atomic # 7 Polarization: -122.17 SS G_CDS: -4.30 Total: -126.47 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Total: -65.63 2.20 -63.43 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260338237.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.450 kcal (2) G-P(sol) polarization free energy of solvation -65.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.432 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds