Wall clock time and date at job start Mon Mar 30 2020 02:02:33
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 H 1.08997 * 109.47563 * 2 1
4 4 C 1.50695 * 109.47448 * 120.00368 * 2 1 3
5 5 H 1.08004 * 120.00546 * 120.27461 * 4 2 1
6 6 C 1.37885 * 119.99721 * 299.99712 * 4 2 1
7 7 N 1.31514 * 120.00035 * 0.02562 * 6 4 2
8 8 Si 1.86803 * 119.99853 * 179.97438 * 6 4 2
9 9 H 1.48500 * 109.46986 * 90.00256 * 8 6 4
10 10 H 1.48496 * 109.47029 * 210.00273 * 8 6 4
11 11 H 1.48499 * 109.47352 * 330.00102 * 8 6 4
12 12 C 1.50707 * 109.47019 * 240.00372 * 2 1 3
13 13 C 1.38630 * 120.39652 * 324.72023 * 12 2 1
14 14 C 1.38582 * 118.55620 * 179.71589 * 13 12 2
15 15 N 1.32299 * 119.19684 * 0.55779 * 14 13 12
16 16 C 1.32482 * 120.74079 * 359.72845 * 15 14 13
17 17 N 1.38398 * 119.21853 * 179.97438 * 16 15 14
18 18 N 1.32253 * 120.40573 * 145.00091 * 12 2 1
19 19 H 1.09002 * 109.47168 * 180.02562 * 1 2 3
20 20 H 1.08998 * 109.46887 * 300.00064 * 1 2 3
21 21 H 1.09005 * 109.47504 * 59.99875 * 1 2 3
22 22 H 0.97000 * 119.99706 * 179.97438 * 7 6 4
23 23 H 1.07998 * 120.72440 * 359.97438 * 13 12 2
24 24 H 1.08000 * 120.40399 * 180.28291 * 14 13 12
25 25 H 0.96999 * 120.00542 * 179.97438 * 17 16 15
26 26 H 0.97001 * 119.99953 * 359.97438 * 17 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 6 2.0323 -0.7104 1.2304
5 1 2.6570 -1.5860 1.1313
6 6 1.6993 -0.2394 2.4827
7 7 0.9428 0.8296 2.6034
8 14 2.3215 -1.1204 4.0079
9 1 3.6298 -0.5460 4.4123
10 1 1.3433 -0.9494 5.1120
11 1 2.4859 -2.5663 3.7119
12 6 2.0323 -0.7104 -1.2306
13 6 1.3458 -1.8018 -1.7398
14 6 1.8384 -2.4227 -2.8766
15 7 2.9485 -1.9651 -3.4322
16 6 3.5840 -0.9232 -2.9168
17 7 4.7430 -0.4711 -3.5233
18 7 3.1363 -0.3036 -1.8345
19 1 -0.3633 -1.0277 0.0005
20 1 -0.3633 0.5138 0.8900
21 1 -0.3634 0.5139 -0.8900
22 1 0.7082 1.1608 3.4845
23 1 0.4443 -2.1579 -1.2635
24 1 1.3248 -3.2725 -3.3014
25 1 5.2173 0.2910 -3.1558
26 1 5.0811 -0.9165 -4.3159
RHF calculation, no. of doubly occupied orbitals= 35
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000260338237.mol2 26
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:02:33
Heat of formation + Delta-G solvation = 23.017890 kcal
Electronic energy + Delta-G solvation = -11670.777933 eV
Core-core repulsion = 9555.509281 eV
Total energy + Delta-G solvation = -2115.268651 eV
No. of doubly occupied orbitals = 35
Molecular weight
(most abundant/longest-lived isotopes) = 193.091 amu
Computer time = 0.18 seconds
Orbital eigenvalues (eV)
-41.71950 -37.10125 -35.40735 -34.33598 -32.43113 -30.20457 -27.29103 -25.45257
-24.40352 -21.97877 -18.91565 -18.54240 -17.96157 -16.67683 -16.40259 -16.29681
-15.84767 -14.95109 -14.72003 -14.13937 -13.49363 -12.87930 -12.82621 -12.37742
-12.28613 -11.91008 -11.82426 -11.71313 -11.52134 -10.76273 -10.50858 -9.87743
-9.11138 -8.13759 -6.28539 0.40762 0.45444 1.42410 1.43304 1.53808
2.35430 2.42909 3.13049 3.14852 3.43365 3.97980 4.23147 4.49259
4.62671 4.91002 4.98685 5.10392 5.21657 5.52673 5.61908 5.75793
5.98799 6.18147 6.22962 6.51998 6.60100 6.75989 7.38611 7.62563
8.91547
Molecular weight = 193.09amu
Principal moments of inertia in cm(-1)
A = 0.048244 B = 0.010518 C = 0.009971
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 580.248374 B = 2661.440524 C = 2807.477948
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.122 4.122
2 C 0.082 3.918
3 H 0.009 0.991
4 C -0.521 4.521
5 H 0.043 0.957
6 C 0.021 3.979
7 N -0.912 5.912
8 Si 0.959 3.041
9 H -0.279 1.279
10 H -0.275 1.275
11 H -0.269 1.269
12 C 0.234 3.766
13 C -0.291 4.291
14 C 0.186 3.814
15 N -0.595 5.595
16 C 0.540 3.460
17 N -0.812 5.812
18 N -0.605 5.605
19 H 0.049 0.951
20 H 0.066 0.934
21 H 0.027 0.973
22 H 0.265 0.735
23 H 0.154 0.846
24 H 0.207 0.793
25 H 0.417 0.583
26 H 0.422 0.578
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.877 -4.892 -8.615 10.083
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.180 4.180
2 C 0.062 3.938
3 H 0.027 0.973
4 C -0.560 4.560
5 H 0.061 0.939
6 C -0.179 4.179
7 N -0.550 5.550
8 Si 0.785 3.215
9 H -0.205 1.205
10 H -0.200 1.200
11 H -0.194 1.194
12 C 0.088 3.912
13 C -0.316 4.316
14 C 0.021 3.979
15 N -0.320 5.320
16 C 0.180 3.820
17 N -0.363 5.363
18 N -0.329 5.329
19 H 0.068 0.932
20 H 0.085 0.915
21 H 0.046 0.954
22 H 0.075 0.925
23 H 0.171 0.829
24 H 0.223 0.777
25 H 0.249 0.751
26 H 0.254 0.746
Dipole moment (debyes) X Y Z Total
from point charges 2.622 -4.454 -8.931 10.318
hybrid contribution -0.043 -0.195 1.200 1.216
sum 2.579 -4.648 -7.731 9.382
Atomic orbital electron populations
1.21664 0.95592 1.00440 1.00273 1.17738 0.93984 0.94173 0.87874
0.97333 1.21032 1.31705 1.12514 0.90755 0.93875 1.25655 0.95020
0.95619 1.01584 1.69994 1.36967 1.23657 1.24400 0.85537 0.78110
0.78985 0.78914 1.20507 1.20033 1.19394 1.22126 0.86406 0.90659
0.92016 1.22591 1.06179 1.01040 1.01819 1.23476 0.88641 0.96174
0.89611 1.67924 1.12586 1.15404 1.36050 1.19796 0.88721 0.86842
0.86593 1.41558 1.23827 1.37620 1.33286 1.67753 1.17733 1.35704
1.11724 0.93183 0.91546 0.95355 0.92523 0.82852 0.77651 0.75130
0.74572
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -5.73 8.42 71.98 0.61 -5.13 15
2 C 0.08 4.27 2.65 -12.29 -0.03 4.24 15
3 H 0.01 0.51 8.14 -2.39 -0.02 0.49 15
4 C -0.52 -29.21 8.55 25.60 0.22 -28.99 15
5 H 0.04 2.45 7.74 -2.91 -0.02 2.43 15
6 C 0.02 1.15 5.30 84.66 0.45 1.60 15
7 N -0.91 -51.78 11.32 21.45 0.24 -51.54 15
8 Si 0.96 43.45 29.54 68.60 2.03 45.48 15
9 H -0.28 -12.54 7.11 99.48 0.71 -11.83 15
10 H -0.28 -11.96 7.11 99.48 0.71 -11.25 15
11 H -0.27 -11.91 7.11 99.48 0.71 -11.20 15
12 C 0.23 10.82 5.75 42.59 0.25 11.07 15
13 C -0.29 -11.07 9.25 22.45 0.21 -10.86 15
14 C 0.19 5.94 11.30 84.70 0.96 6.89 15
15 N -0.60 -20.76 10.46 -197.99 -2.07 -22.83 15
16 C 0.54 20.35 8.67 261.49 2.27 22.62 15
17 N -0.81 -22.33 9.07 -59.75 -0.54 -22.87 15
18 N -0.60 -27.30 10.39 -186.03 -1.93 -29.23 15
19 H 0.05 2.15 6.58 -2.39 -0.02 2.13 15
20 H 0.07 3.46 6.07 -2.39 -0.01 3.44 15
21 H 0.03 1.19 8.14 -2.38 -0.02 1.17 15
22 H 0.27 14.22 8.31 -92.71 -0.77 13.45 15
23 H 0.15 5.33 6.44 -2.91 -0.02 5.31 15
24 H 0.21 4.37 8.06 -2.91 -0.02 4.34 15
25 H 0.42 10.37 8.94 -92.71 -0.83 9.54 15
26 H 0.42 8.92 8.94 -92.71 -0.83 8.09 15
Total: -1.00 -65.63 229.36 2.20 -63.43
By element:
Atomic # 1 Polarization: 16.56 SS G_CDS: -0.44 Total: 16.12 kcal
Atomic # 6 Polarization: -3.48 SS G_CDS: 4.92 Total: 1.44 kcal
Atomic # 7 Polarization: -122.17 SS G_CDS: -4.30 Total: -126.47 kcal
Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal
Total: -65.63 2.20 -63.43 kcal
The number of atoms in the molecule is 26
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260338237.mol2 26
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 86.450 kcal
(2) G-P(sol) polarization free energy of solvation -65.632 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.818 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.200 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.432 kcal
(6) G-S(sol) free energy of system = (1) + (5) 23.018 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.18 seconds