Wall clock time and date at job start Mon Mar 30 2020 01:53:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.32016 * 119.56057 * 2 1 4 4 N 1.28742 * 121.34590 * 179.97438 * 3 2 1 5 5 C 1.32218 * 120.39399 * 0.02562 * 4 3 2 6 6 C 1.38715 * 119.11999 * 359.97438 * 5 4 3 7 7 C 1.50700 * 120.63067 * 180.02562 * 6 5 4 8 8 H 1.08999 * 109.46993 * 205.00245 * 7 6 5 9 9 C 1.53007 * 109.46942 * 85.00495 * 7 6 5 10 10 C 1.50695 * 109.47175 * 325.00453 * 7 6 5 11 11 H 1.07995 * 119.99928 * 359.97438 * 10 7 6 12 12 C 1.37880 * 120.00175 * 179.97438 * 10 7 6 13 13 N 1.31513 * 119.99711 * 0.02562 * 12 10 7 14 14 Si 1.86795 * 120.00295 * 180.02562 * 12 10 7 15 15 H 1.48502 * 109.47086 * 60.00066 * 14 12 10 16 16 H 1.48496 * 109.47091 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.47078 * 300.00082 * 14 12 10 18 18 N 1.32017 * 119.56671 * 179.72685 * 2 1 3 19 19 H 1.08999 * 109.47015 * 90.00341 * 1 2 3 20 20 H 1.09000 * 109.46646 * 209.99494 * 1 2 3 21 21 H 1.09000 * 109.47248 * 330.00211 * 1 2 3 22 22 H 1.07997 * 120.44503 * 179.97438 * 5 4 3 23 23 H 1.09005 * 109.46731 * 59.99988 * 9 7 6 24 24 H 1.08992 * 109.47184 * 180.02562 * 9 7 6 25 25 H 1.09001 * 109.46769 * 300.00417 * 9 7 6 26 26 H 0.96997 * 120.00447 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1584 1.1483 0.0000 4 7 3.4451 1.1884 0.0005 5 6 4.1493 0.0694 0.0005 6 6 3.4831 -1.1474 0.0005 7 6 4.2518 -2.4436 0.0011 8 1 3.6362 -3.2312 -0.4333 9 6 4.6194 -2.8179 1.4384 10 6 5.5095 -2.2822 -0.8133 11 1 5.7299 -1.3358 -1.2845 12 6 6.3788 -3.3428 -0.9568 13 7 6.1101 -4.4954 -0.3833 14 14 7.9380 -3.1425 -1.9656 15 1 8.7763 -2.0692 -1.3735 16 1 8.6954 -4.4198 -1.9651 17 1 7.5817 -2.7794 -3.3607 18 7 2.1585 -1.1482 0.0055 19 1 -0.3633 -0.0001 -1.0277 20 1 -0.3632 -0.8901 0.5138 21 1 -0.3634 0.8900 0.5138 22 1 5.2288 0.1020 0.0005 23 1 3.7097 -2.9346 2.0274 24 1 5.1758 -3.7551 1.4389 25 1 5.2349 -2.0301 1.8729 26 1 6.7217 -5.2414 -0.4839 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260385619.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:39 Heat of formation + Delta-G solvation = 38.539669 kcal Electronic energy + Delta-G solvation = -11681.329562 eV Core-core repulsion = 9566.733986 eV Total energy + Delta-G solvation = -2114.595577 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.091 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.78568 -37.29559 -35.86482 -34.39315 -31.91874 -29.85137 -27.43059 -26.31542 -24.89701 -22.10569 -19.91493 -18.15131 -17.51978 -16.79566 -16.70049 -15.89744 -14.77364 -14.68260 -13.98868 -13.69713 -13.48053 -13.14182 -13.01667 -12.83594 -12.59438 -12.50219 -12.25858 -12.01662 -11.94477 -11.10762 -10.77267 -10.51951 -10.18488 -8.16873 -6.33117 -0.40233 -0.24270 1.48229 1.48726 1.56061 2.39045 2.51739 2.77611 2.86251 3.14171 3.26713 3.94044 4.14548 4.37019 4.66785 4.67926 4.79319 4.90910 5.00006 5.03751 5.23583 5.46890 5.65991 5.90338 6.01619 6.18181 6.72375 7.36808 7.44875 8.89070 Molecular weight = 193.09amu Principal moments of inertia in cm(-1) A = 0.057090 B = 0.010343 C = 0.009507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 490.333939 B = 2706.428277 C = 2944.566486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.242 3.758 3 N -0.320 5.320 4 N -0.211 5.211 5 C -0.008 4.008 6 C 0.188 3.812 7 C 0.088 3.912 8 H 0.026 0.974 9 C -0.118 4.118 10 C -0.542 4.542 11 H 0.068 0.932 12 C 0.026 3.974 13 N -0.910 5.910 14 Si 0.960 3.040 15 H -0.264 1.264 16 H -0.285 1.285 17 H -0.275 1.275 18 N -0.502 5.502 19 H 0.105 0.895 20 H 0.097 0.903 21 H 0.106 0.894 22 H 0.199 0.801 23 H 0.025 0.975 24 H 0.076 0.924 25 H 0.039 0.961 26 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.327 5.236 0.980 7.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.027 4.027 3 N -0.168 5.168 4 N -0.058 5.058 5 C -0.177 4.177 6 C 0.032 3.968 7 C 0.068 3.932 8 H 0.044 0.956 9 C -0.177 4.177 10 C -0.580 4.580 11 H 0.086 0.914 12 C -0.175 4.175 13 N -0.548 5.548 14 Si 0.785 3.215 15 H -0.189 1.189 16 H -0.210 1.210 17 H -0.201 1.201 18 N -0.224 5.224 19 H 0.123 0.877 20 H 0.116 0.884 21 H 0.125 0.875 22 H 0.215 0.785 23 H 0.044 0.956 24 H 0.095 0.905 25 H 0.058 0.942 26 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.887 5.993 1.014 8.462 hybrid contribution 1.405 -1.023 -0.522 1.815 sum -4.482 4.970 0.492 6.710 Atomic orbital electron populations 1.20725 0.81551 1.05689 1.05517 1.25610 1.01750 0.85140 0.90215 1.73421 1.02166 1.26557 1.14638 1.73522 1.00624 1.26605 1.05035 1.25148 1.04728 0.90064 0.97770 1.23464 0.89992 0.99138 0.84162 1.17787 0.93176 0.86495 0.95774 0.95605 1.21603 0.98942 1.02859 0.94297 1.21303 1.05408 0.98875 1.32422 0.91357 1.25644 1.00968 0.94614 0.96243 1.69974 1.38212 1.02662 1.43911 0.85576 0.79233 0.77656 0.79052 1.18873 1.21001 1.20082 1.68921 1.09330 1.30788 1.13360 0.87684 0.88399 0.87524 0.78451 0.95635 0.90490 0.94154 0.92424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.75 10.35 71.24 0.74 -1.01 15 2 C 0.24 8.56 7.71 138.62 1.07 9.63 15 3 N -0.32 -12.16 11.48 -51.34 -0.59 -12.74 15 4 N -0.21 -8.43 11.63 -57.03 -0.66 -9.09 15 5 C -0.01 -0.33 10.17 84.75 0.86 0.53 15 6 C 0.19 8.18 5.81 42.58 0.25 8.43 15 7 C 0.09 4.23 2.66 -12.29 -0.03 4.20 15 8 H 0.03 1.40 8.14 -2.39 -0.02 1.38 15 9 C -0.12 -5.40 8.95 71.98 0.64 -4.76 15 10 C -0.54 -27.29 7.94 25.60 0.20 -27.08 15 11 H 0.07 3.29 6.39 -2.91 -0.02 3.27 15 12 C 0.03 1.33 5.30 84.66 0.45 1.78 15 13 N -0.91 -48.75 11.32 21.45 0.24 -48.50 15 14 Si 0.96 40.40 29.54 68.60 2.03 42.42 15 15 H -0.26 -10.65 7.11 99.48 0.71 -9.94 15 16 H -0.28 -11.87 7.11 99.48 0.71 -11.16 15 17 H -0.28 -11.52 7.11 99.48 0.71 -10.81 15 18 N -0.50 -20.61 10.39 -175.56 -1.82 -22.44 15 19 H 0.10 2.06 8.14 -2.39 -0.02 2.04 15 20 H 0.10 2.05 8.14 -2.39 -0.02 2.03 15 21 H 0.11 2.00 8.14 -2.39 -0.02 1.98 15 22 H 0.20 7.46 6.86 -2.91 -0.02 7.44 15 23 H 0.02 1.06 8.14 -2.38 -0.02 1.04 15 24 H 0.08 3.84 6.07 -2.39 -0.01 3.83 15 25 H 0.04 1.72 8.14 -2.39 -0.02 1.70 15 26 H 0.27 13.61 8.31 -92.71 -0.77 12.84 15 Total: -1.00 -57.57 231.05 4.55 -53.01 By element: Atomic # 1 Polarization: 4.45 SS G_CDS: 1.18 Total: 5.64 kcal Atomic # 6 Polarization: -12.48 SS G_CDS: 4.18 Total: -8.30 kcal Atomic # 7 Polarization: -89.94 SS G_CDS: -2.83 Total: -92.77 kcal Atomic # 14 Polarization: 40.40 SS G_CDS: 2.03 Total: 42.42 kcal Total: -57.57 4.55 -53.01 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260385619.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.554 kcal (2) G-P(sol) polarization free energy of solvation -57.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds