Wall clock time and date at job start Mon Mar 30 2020 02:23:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47146 * 2 1 4 4 H 1.09002 * 109.46629 * 304.99955 * 3 2 1 5 5 C 1.50698 * 109.47224 * 184.99980 * 3 2 1 6 6 H 1.07998 * 120.00154 * 239.99765 * 5 3 2 7 7 C 1.37877 * 120.00263 * 59.99856 * 5 3 2 8 8 N 1.31516 * 119.99936 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00290 * 180.02562 * 7 5 3 10 10 H 1.48506 * 109.46886 * 59.99632 * 9 7 5 11 11 H 1.48495 * 109.47107 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.46966 * 300.00137 * 9 7 5 13 13 C 1.50694 * 109.47272 * 64.99575 * 3 2 1 14 14 C 1.34858 * 125.88994 * 35.20247 * 13 3 2 15 15 C 1.40892 * 107.41686 * 180.25251 * 14 13 3 16 16 C 1.34851 * 107.41480 * 359.73710 * 15 14 13 17 17 N 1.36343 * 125.89186 * 215.00447 * 13 3 2 18 18 C 1.46499 * 125.63539 * 359.97438 * 17 13 3 19 19 H 1.08994 * 109.47458 * 300.00363 * 1 2 3 20 20 H 1.08997 * 109.47254 * 60.00624 * 1 2 3 21 21 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 22 22 H 1.08994 * 109.47458 * 239.99637 * 2 1 3 23 23 H 1.09001 * 109.47413 * 119.99859 * 2 1 3 24 24 H 0.96998 * 120.00128 * 180.02562 * 8 7 5 25 25 H 1.08001 * 126.28962 * 359.97438 * 14 13 3 26 26 H 1.07993 * 126.29420 * 179.73505 * 15 14 13 27 27 H 1.08001 * 125.89119 * 180.02562 * 16 15 14 28 28 H 1.09002 * 109.47391 * 269.72164 * 18 17 13 29 29 H 1.09001 * 109.46813 * 149.72220 * 18 17 13 30 30 H 1.09004 * 109.47041 * 29.72347 * 18 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2279 8 7 3.4063 0.3366 -2.1728 9 14 6.0050 0.8800 -1.3811 10 1 6.5966 0.1453 -0.2341 11 1 6.3979 0.2157 -2.6497 12 1 6.5004 2.2799 -1.3807 13 6 1.6413 2.1163 1.2876 14 6 1.5711 1.5279 2.4990 15 6 1.1550 2.5089 3.4208 16 6 0.9925 3.6607 2.7386 17 7 1.2929 3.4268 1.4294 18 6 1.2441 4.4184 0.3521 19 1 -0.3634 0.5138 0.8899 20 1 -0.3633 0.5137 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 1.8934 -0.5138 -0.8899 23 1 1.8934 -0.5138 0.8900 24 1 3.8294 -0.0619 -2.9494 25 1 1.7889 0.4937 2.7209 26 1 0.9956 2.3649 4.4791 27 1 0.6789 4.6056 3.1571 28 1 2.2132 4.9098 0.2663 29 1 0.4786 5.1613 0.5766 30 1 1.0039 3.9219 -0.5881 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260392116.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:34 Heat of formation + Delta-G solvation = 34.680140 kcal Electronic energy + Delta-G solvation = -12260.392490 eV Core-core repulsion = 10249.169895 eV Total energy + Delta-G solvation = -2011.222595 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 193.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.32826 -34.80599 -32.08777 -31.56047 -28.55006 -26.16044 -25.60002 -23.02886 -20.75466 -19.43983 -17.90972 -16.40988 -16.00246 -14.52172 -14.37806 -13.61860 -12.83597 -12.80048 -12.52565 -12.08103 -11.68884 -11.51208 -11.24139 -11.16468 -11.03987 -10.83644 -10.53744 -9.84529 -9.71718 -9.47342 -8.99204 -8.33667 -7.74569 -6.97042 -6.00154 -4.08156 3.18692 3.31459 3.35836 3.40294 3.83203 3.98434 4.45021 5.27583 5.38686 5.71839 5.76575 6.00348 6.18972 6.30691 6.35891 6.43275 6.52815 6.64294 7.04431 7.07583 7.18665 7.22452 7.39781 7.67304 7.78841 8.02819 8.10253 8.25302 8.33081 8.45573 8.94328 9.56310 11.03324 Molecular weight = 193.12amu Principal moments of inertia in cm(-1) A = 0.036362 B = 0.013103 C = 0.011636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.848797 B = 2136.411040 C = 2405.820848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.109 4.109 3 C 0.107 3.893 4 H 0.029 0.971 5 C -0.505 4.505 6 H 0.055 0.945 7 C 0.062 3.938 8 N -0.890 5.890 9 Si 0.894 3.106 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.278 1.278 13 C 0.085 3.915 14 C -0.226 4.226 15 C -0.202 4.202 16 C -0.056 4.056 17 N -0.453 5.453 18 C 0.080 3.920 19 H 0.042 0.958 20 H 0.038 0.962 21 H 0.033 0.967 22 H 0.096 0.904 23 H 0.038 0.962 24 H 0.262 0.738 25 H 0.125 0.875 26 H 0.121 0.879 27 H 0.146 0.854 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.234 4.405 4.002 7.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.148 4.148 3 C 0.088 3.912 4 H 0.047 0.953 5 C -0.543 4.543 6 H 0.074 0.926 7 C -0.139 4.139 8 N -0.529 5.529 9 Si 0.722 3.278 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.204 1.204 13 C -0.027 4.027 14 C -0.249 4.249 15 C -0.228 4.228 16 C -0.184 4.184 17 N -0.129 5.129 18 C -0.062 4.062 19 H 0.061 0.939 20 H 0.058 0.942 21 H 0.052 0.948 22 H 0.114 0.886 23 H 0.057 0.943 24 H 0.071 0.929 25 H 0.143 0.857 26 H 0.139 0.861 27 H 0.163 0.837 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -4.234 4.587 3.557 7.184 hybrid contribution 1.027 0.096 -0.019 1.032 sum -3.208 4.682 3.537 6.688 Atomic orbital electron populations 1.21846 0.99254 0.99176 1.00149 1.21532 0.91680 0.98930 1.02628 1.17464 0.95490 0.91649 0.86562 0.95313 1.21052 0.90579 1.37618 1.05098 0.92637 1.24944 0.98117 0.95194 0.95630 1.69866 1.34915 1.38572 1.09546 0.86626 0.85693 0.78219 0.77311 1.20151 1.21276 1.20394 1.21385 1.00199 0.82173 0.98961 1.20482 1.12877 0.99340 0.92217 1.20718 1.09955 0.93724 0.98416 1.21438 1.13355 0.99716 0.83901 1.43936 1.52822 1.09114 1.07037 1.21827 1.02037 0.91520 0.90844 0.93924 0.94237 0.94827 0.88587 0.94291 0.92852 0.85713 0.86132 0.83673 0.91528 0.91367 0.89763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.04 9.71 37.16 0.36 -2.68 16 2 C -0.11 -2.63 4.95 -26.73 -0.13 -2.76 16 3 C 0.11 2.70 1.96 -92.93 -0.18 2.52 16 4 H 0.03 0.77 6.91 -51.93 -0.36 0.41 16 5 C -0.50 -13.90 8.55 -34.44 -0.29 -14.20 16 6 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 7 C 0.06 1.70 5.29 -17.82 -0.09 1.61 16 8 N -0.89 -24.88 11.29 55.43 0.63 -24.25 16 9 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 13 C 0.09 1.96 4.90 -81.79 -0.40 1.55 16 14 C -0.23 -4.99 9.47 -39.78 -0.38 -5.36 16 15 C -0.20 -3.93 10.86 -39.78 -0.43 -4.37 16 16 C -0.06 -1.04 11.43 -16.75 -0.19 -1.23 16 17 N -0.45 -9.13 3.15 -119.90 -0.38 -9.51 16 18 C 0.08 1.32 10.92 59.85 0.65 1.97 16 19 H 0.04 0.87 6.96 -51.93 -0.36 0.50 16 20 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 21 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 22 H 0.10 2.54 5.95 -51.93 -0.31 2.23 16 23 H 0.04 0.93 7.01 -51.93 -0.36 0.56 16 24 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 25 H 0.12 2.71 7.23 -52.49 -0.38 2.33 16 26 H 0.12 2.01 8.06 -52.49 -0.42 1.59 16 27 H 0.15 2.14 8.06 -52.49 -0.42 1.72 16 28 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 30 H 0.08 1.44 6.94 -51.93 -0.36 1.08 16 LS Contribution 249.07 15.07 3.75 3.75 Total: -1.00 -29.14 249.07 -6.32 -35.46 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -4.21 Total: 1.25 kcal Atomic # 6 Polarization: -21.86 SS G_CDS: -1.09 Total: -22.95 kcal Atomic # 7 Polarization: -34.01 SS G_CDS: 0.25 Total: -33.76 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -29.14 -6.32 -35.46 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260392116.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.140 kcal (2) G-P(sol) polarization free energy of solvation -29.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.460 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds