Wall clock time and date at job start Mon Mar 30 2020 02:23:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47146 * 2 1 4 4 H 1.09002 * 109.46629 * 304.99955 * 3 2 1 5 5 C 1.50698 * 109.47224 * 184.99980 * 3 2 1 6 6 H 1.07998 * 120.00154 * 239.99765 * 5 3 2 7 7 C 1.37877 * 120.00263 * 59.99856 * 5 3 2 8 8 N 1.31516 * 119.99936 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00290 * 180.02562 * 7 5 3 10 10 H 1.48506 * 109.46886 * 59.99632 * 9 7 5 11 11 H 1.48495 * 109.47107 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.46966 * 300.00137 * 9 7 5 13 13 C 1.50694 * 109.47272 * 64.99575 * 3 2 1 14 14 C 1.34858 * 125.88994 * 35.20247 * 13 3 2 15 15 C 1.40892 * 107.41686 * 180.25251 * 14 13 3 16 16 C 1.34851 * 107.41480 * 359.73710 * 15 14 13 17 17 N 1.36343 * 125.89186 * 215.00447 * 13 3 2 18 18 C 1.46499 * 125.63539 * 359.97438 * 17 13 3 19 19 H 1.08994 * 109.47458 * 300.00363 * 1 2 3 20 20 H 1.08997 * 109.47254 * 60.00624 * 1 2 3 21 21 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 22 22 H 1.08994 * 109.47458 * 239.99637 * 2 1 3 23 23 H 1.09001 * 109.47413 * 119.99859 * 2 1 3 24 24 H 0.96998 * 120.00128 * 180.02562 * 8 7 5 25 25 H 1.08001 * 126.28962 * 359.97438 * 14 13 3 26 26 H 1.07993 * 126.29420 * 179.73505 * 15 14 13 27 27 H 1.08001 * 125.89119 * 180.02562 * 16 15 14 28 28 H 1.09002 * 109.47391 * 269.72164 * 18 17 13 29 29 H 1.09001 * 109.46813 * 149.72220 * 18 17 13 30 30 H 1.09004 * 109.47041 * 29.72347 * 18 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2279 8 7 3.4063 0.3366 -2.1728 9 14 6.0050 0.8800 -1.3811 10 1 6.5966 0.1453 -0.2341 11 1 6.3979 0.2157 -2.6497 12 1 6.5004 2.2799 -1.3807 13 6 1.6413 2.1163 1.2876 14 6 1.5711 1.5279 2.4990 15 6 1.1550 2.5089 3.4208 16 6 0.9925 3.6607 2.7386 17 7 1.2929 3.4268 1.4294 18 6 1.2441 4.4184 0.3521 19 1 -0.3634 0.5138 0.8899 20 1 -0.3633 0.5137 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 1.8934 -0.5138 -0.8899 23 1 1.8934 -0.5138 0.8900 24 1 3.8294 -0.0619 -2.9494 25 1 1.7889 0.4937 2.7209 26 1 0.9956 2.3649 4.4791 27 1 0.6789 4.6056 3.1571 28 1 2.2132 4.9098 0.2663 29 1 0.4786 5.1613 0.5766 30 1 1.0039 3.9219 -0.5881 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260392116.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:33 Heat of formation + Delta-G solvation = 18.987179 kcal Electronic energy + Delta-G solvation = -12261.072987 eV Core-core repulsion = 10249.169895 eV Total energy + Delta-G solvation = -2011.903093 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 193.116 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.89163 -36.72711 -33.77186 -33.36403 -30.30755 -27.99686 -27.01562 -24.96834 -22.55790 -20.96588 -19.60199 -18.38344 -17.71724 -16.43930 -15.89086 -15.28639 -14.69918 -14.45081 -14.05404 -13.77447 -13.31557 -13.08716 -12.94014 -12.83928 -12.74607 -12.70031 -12.35104 -11.77588 -11.60074 -11.40424 -10.97964 -10.41723 -9.28104 -8.62599 -8.06450 -6.24523 1.40042 1.41873 1.49135 1.66380 2.31713 2.39267 2.48159 3.15590 4.14537 4.34264 4.47256 4.50259 4.56399 4.68056 4.74178 4.84883 4.91483 4.93510 5.19849 5.30482 5.43872 5.54912 5.61582 5.69448 5.87476 6.05954 6.33176 6.44615 6.64942 6.80995 6.83584 7.43204 8.92804 Molecular weight = 193.12amu Principal moments of inertia in cm(-1) A = 0.036362 B = 0.013103 C = 0.011636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.848797 B = 2136.411040 C = 2405.820848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.105 4.105 3 C 0.113 3.887 4 H 0.005 0.995 5 C -0.524 4.524 6 H 0.039 0.961 7 C 0.020 3.980 8 N -0.911 5.911 9 Si 0.952 3.048 10 H -0.275 1.275 11 H -0.279 1.279 12 H -0.273 1.273 13 C 0.050 3.950 14 C -0.239 4.239 15 C -0.218 4.218 16 C -0.037 4.037 17 N -0.460 5.460 18 C 0.075 3.925 19 H 0.045 0.955 20 H 0.037 0.963 21 H 0.054 0.946 22 H 0.069 0.931 23 H 0.031 0.969 24 H 0.263 0.737 25 H 0.115 0.885 26 H 0.148 0.852 27 H 0.191 0.809 28 H 0.068 0.932 29 H 0.112 0.888 30 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.577 5.612 4.967 8.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.143 4.143 3 C 0.094 3.906 4 H 0.023 0.977 5 C -0.562 4.562 6 H 0.058 0.942 7 C -0.179 4.179 8 N -0.550 5.550 9 Si 0.778 3.222 10 H -0.200 1.200 11 H -0.204 1.204 12 H -0.199 1.199 13 C -0.063 4.063 14 C -0.263 4.263 15 C -0.243 4.243 16 C -0.165 4.165 17 N -0.136 5.136 18 C -0.066 4.066 19 H 0.064 0.936 20 H 0.056 0.944 21 H 0.073 0.927 22 H 0.087 0.913 23 H 0.050 0.950 24 H 0.073 0.927 25 H 0.133 0.867 26 H 0.166 0.834 27 H 0.208 0.792 28 H 0.087 0.913 29 H 0.130 0.870 30 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.582 5.801 4.515 8.662 hybrid contribution 1.109 -0.242 -0.287 1.171 sum -3.473 5.559 4.227 7.800 Atomic orbital electron populations 1.21685 0.96602 1.00582 1.00189 1.21386 0.94041 0.98126 1.00780 1.17234 0.94070 0.92101 0.87205 0.97720 1.21261 0.92116 1.37896 1.04941 0.94221 1.25633 1.02199 0.94783 0.95294 1.69978 1.36429 1.38823 1.09815 0.85706 0.80769 0.78356 0.77404 1.20044 1.20450 1.19853 1.21036 1.03041 0.84028 0.98149 1.20629 1.13070 0.99649 0.92920 1.21046 1.10331 0.93328 0.99585 1.22166 1.10511 1.01069 0.82790 1.44196 1.52236 1.08609 1.08574 1.22035 1.03665 0.91424 0.89486 0.93560 0.94364 0.92708 0.91294 0.95022 0.92735 0.86699 0.83446 0.79198 0.91343 0.87004 0.91362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.50 9.71 71.98 0.70 -4.80 16 2 C -0.10 -5.17 4.95 30.59 0.15 -5.02 16 3 C 0.11 5.83 1.96 -12.29 -0.02 5.80 16 4 H 0.00 0.27 6.91 -2.39 -0.02 0.25 16 5 C -0.52 -29.54 8.55 25.60 0.22 -29.33 16 6 H 0.04 2.30 7.74 -2.91 -0.02 2.28 16 7 C 0.02 1.11 5.29 84.65 0.45 1.56 16 8 N -0.91 -51.89 11.29 21.45 0.24 -51.65 16 9 Si 0.95 43.93 29.54 68.60 2.03 45.96 16 10 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 11 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 12 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 13 C 0.05 2.30 4.90 41.08 0.20 2.50 16 14 C -0.24 -10.44 9.47 22.14 0.21 -10.23 16 15 C -0.22 -7.94 10.86 22.14 0.24 -7.70 16 16 C -0.04 -1.24 11.43 83.21 0.95 -0.29 16 17 N -0.46 -17.78 3.15 -533.24 -1.68 -19.46 16 18 C 0.08 2.34 10.92 127.77 1.40 3.74 16 19 H 0.05 1.86 6.96 -2.39 -0.02 1.84 16 20 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 21 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 22 H 0.07 3.76 5.95 -2.39 -0.01 3.74 16 23 H 0.03 1.55 7.01 -2.39 -0.02 1.53 16 24 H 0.26 14.26 8.31 -92.71 -0.77 13.49 16 25 H 0.11 5.08 7.23 -2.91 -0.02 5.06 16 26 H 0.15 4.44 8.06 -2.91 -0.02 4.42 16 27 H 0.19 4.53 8.06 -2.91 -0.02 4.51 16 28 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 29 H 0.11 2.46 8.14 -2.39 -0.02 2.45 16 30 H 0.07 2.33 6.94 -2.38 -0.02 2.31 16 Total: -1.00 -62.86 249.07 6.18 -56.68 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: 1.10 Total: 12.23 kcal Atomic # 6 Polarization: -48.25 SS G_CDS: 4.49 Total: -43.76 kcal Atomic # 7 Polarization: -69.67 SS G_CDS: -1.44 Total: -71.11 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Total: -62.86 6.18 -56.68 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260392116.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.663 kcal (2) G-P(sol) polarization free energy of solvation -62.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds