Wall clock time and date at job start Mon Mar 30 2020 01:52:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31806 * 119.12467 * 2 1 4 4 C 1.32322 * 120.81747 * 179.97438 * 3 2 1 5 5 C 1.38610 * 119.10154 * 0.02562 * 4 3 2 6 6 C 1.38577 * 118.40308 * 359.97438 * 5 4 3 7 7 C 1.50700 * 120.44713 * 180.02562 * 6 5 4 8 8 H 1.08996 * 109.47152 * 244.99387 * 7 6 5 9 9 N 1.46893 * 109.47552 * 5.00233 * 7 6 5 10 10 C 1.50713 * 109.46823 * 124.99911 * 7 6 5 11 11 H 1.07999 * 119.99879 * 354.54694 * 10 7 6 12 12 C 1.37876 * 119.99616 * 174.54536 * 10 7 6 13 13 N 1.31515 * 119.99939 * 165.51523 * 12 10 7 14 14 Si 1.86802 * 120.00120 * 345.23485 * 12 10 7 15 15 H 1.48502 * 109.46761 * 180.27664 * 14 12 10 16 16 H 1.48496 * 109.47316 * 300.27662 * 14 12 10 17 17 H 1.48497 * 109.47078 * 60.27574 * 14 12 10 18 18 N 1.31775 * 119.11811 * 180.25711 * 2 1 3 19 19 H 1.08996 * 109.47303 * 89.99519 * 1 2 3 20 20 H 1.08994 * 109.47572 * 210.00102 * 1 2 3 21 21 H 1.09007 * 109.46773 * 330.00109 * 1 2 3 22 22 H 1.07998 * 120.44540 * 180.02562 * 4 3 2 23 23 H 1.08002 * 120.80025 * 179.97438 * 5 4 3 24 24 H 1.00906 * 111.00223 * 54.10975 * 9 7 6 25 25 H 1.00892 * 111.00431 * 178.06834 * 9 7 6 26 26 H 0.97005 * 119.99287 * 354.42396 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1486 1.1514 0.0000 4 6 3.4712 1.1905 0.0005 5 6 4.1808 -0.0002 0.0005 6 6 3.4712 -1.1905 0.0005 7 6 4.1961 -2.5117 0.0011 8 1 3.9903 -3.0394 -0.9302 9 7 5.6411 -2.2775 0.1223 10 6 3.7227 -3.3438 1.1651 11 1 3.0385 -2.9229 1.8869 12 6 4.1631 -4.6425 1.3083 13 7 3.9903 -5.2734 2.4492 14 14 4.9982 -5.5085 -0.1207 15 1 5.3684 -6.8882 0.2849 16 1 4.0681 -5.5652 -1.2770 17 1 6.2218 -4.7606 -0.5060 18 7 2.1483 -1.1512 -0.0052 19 1 -0.3634 0.0001 -1.0276 20 1 -0.3634 -0.8899 0.5138 21 1 -0.3633 0.8901 0.5139 22 1 3.9907 2.1373 0.0009 23 1 5.2608 -0.0003 0.0005 24 1 5.8486 -1.7069 0.9283 25 1 6.1472 -3.1496 0.1567 26 1 3.6271 -4.8008 3.2145 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260392399.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:38 Heat of formation + Delta-G solvation = 43.212651 kcal Electronic energy + Delta-G solvation = -11724.277780 eV Core-core repulsion = 9609.884840 eV Total energy + Delta-G solvation = -2114.392941 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.091 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.45987 -35.58270 -32.95992 -32.52804 -31.24895 -27.93901 -26.34395 -24.00174 -22.35623 -20.19505 -17.81764 -17.01268 -16.25524 -14.73387 -14.53357 -14.39732 -13.74333 -13.21533 -12.73236 -12.57271 -12.29733 -12.11744 -12.00968 -11.26955 -10.54476 -10.27303 -10.17738 -9.86645 -9.37677 -8.84149 -8.57718 -8.53834 -7.72757 -6.56459 -4.27624 1.50204 1.72072 3.23935 3.35576 3.50865 4.32319 4.34045 4.43590 4.62209 5.12319 5.15838 5.53107 5.72983 5.77663 5.80140 5.92620 6.03905 6.22673 6.44518 6.79409 7.05741 7.61444 7.65452 8.07818 8.26836 8.32423 8.75170 8.77275 9.43009 10.76922 Molecular weight = 193.09amu Principal moments of inertia in cm(-1) A = 0.048936 B = 0.011706 C = 0.010465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.037685 B = 2391.450838 C = 2674.887636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.302 3.698 3 N -0.543 5.543 4 C 0.133 3.867 5 C -0.232 4.232 6 C 0.225 3.775 7 C 0.219 3.781 8 H 0.063 0.937 9 N -0.858 5.858 10 C -0.613 4.613 11 H 0.059 0.941 12 C 0.033 3.967 13 N -0.897 5.897 14 Si 1.043 2.957 15 H -0.282 1.282 16 H -0.280 1.280 17 H -0.272 1.272 18 N -0.504 5.504 19 H 0.079 0.921 20 H 0.083 0.917 21 H 0.078 0.922 22 H 0.158 0.842 23 H 0.152 0.848 24 H 0.327 0.673 25 H 0.339 0.661 26 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.219 8.758 -5.091 10.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.034 3.966 3 N -0.259 5.259 4 C -0.032 4.032 5 C -0.254 4.254 6 C 0.079 3.921 7 C 0.109 3.891 8 H 0.080 0.920 9 N -0.390 5.390 10 C -0.653 4.653 11 H 0.078 0.922 12 C -0.174 4.174 13 N -0.530 5.530 14 Si 0.871 3.129 15 H -0.208 1.208 16 H -0.207 1.207 17 H -0.199 1.199 18 N -0.219 5.219 19 H 0.097 0.903 20 H 0.101 0.899 21 H 0.097 0.903 22 H 0.176 0.824 23 H 0.169 0.831 24 H 0.138 0.862 25 H 0.155 0.845 26 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.645 7.643 -6.286 9.917 hybrid contribution 0.172 1.010 1.506 1.821 sum -0.472 8.652 -4.780 9.896 Atomic orbital electron populations 1.20461 0.86543 1.03569 1.03195 1.23186 0.97942 0.83806 0.91691 1.68119 1.10225 1.30758 1.16818 1.23050 0.89828 0.98329 0.91979 1.22810 1.03535 0.93909 1.05184 1.22031 0.88871 0.96322 0.84885 1.18208 0.84803 0.87632 0.98504 0.91980 1.59800 1.09039 1.22942 1.47245 1.22420 1.32256 1.00270 1.10371 0.92239 1.25848 0.95874 0.94512 1.01148 1.70822 1.41013 1.39881 1.01283 0.84024 0.76805 0.76727 0.75352 1.20798 1.20650 1.19882 1.68083 1.10414 1.29383 1.14003 0.90272 0.89851 0.90336 0.82434 0.83083 0.86230 0.84509 0.92031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.18 10.32 36.01 0.37 -0.81 15 2 C 0.30 5.87 7.64 -157.20 -1.20 4.66 15 3 N -0.54 -9.99 10.33 -10.73 -0.11 -10.10 15 4 C 0.13 2.22 11.31 -17.20 -0.19 2.03 15 5 C -0.23 -4.29 9.21 -39.32 -0.36 -4.65 15 6 C 0.22 5.01 6.12 -82.24 -0.50 4.51 15 7 C 0.22 5.19 2.75 -70.01 -0.19 5.00 15 8 H 0.06 1.53 6.86 -51.93 -0.36 1.17 15 9 N -0.86 -17.79 8.24 -6.65 -0.05 -17.84 15 10 C -0.61 -16.96 8.89 -34.43 -0.31 -17.26 15 11 H 0.06 1.85 7.99 -52.49 -0.42 1.43 15 12 C 0.03 0.91 5.39 -17.82 -0.10 0.81 15 13 N -0.90 -26.87 13.69 55.43 0.76 -26.11 15 14 Si 1.04 24.01 26.40 -169.99 -4.49 19.52 15 15 H -0.28 -6.58 7.11 56.52 0.40 -6.18 15 16 H -0.28 -6.34 7.11 56.52 0.40 -5.94 15 17 H -0.27 -5.59 5.67 56.52 0.32 -5.27 15 18 N -0.50 -11.38 10.05 -6.99 -0.07 -11.45 15 19 H 0.08 1.03 8.14 -51.93 -0.42 0.60 15 20 H 0.08 1.24 8.14 -51.93 -0.42 0.82 15 21 H 0.08 1.01 8.14 -51.93 -0.42 0.59 15 22 H 0.16 1.95 8.06 -52.49 -0.42 1.53 15 23 H 0.15 2.48 6.65 -52.49 -0.35 2.13 15 24 H 0.33 6.42 7.98 -39.29 -0.31 6.10 15 25 H 0.34 7.14 5.46 -39.30 -0.21 6.92 15 26 H 0.27 8.14 8.73 -40.82 -0.36 7.78 15 LS Contribution 226.37 15.07 3.41 3.41 Total: -1.00 -30.97 226.37 -5.61 -36.58 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: -2.58 Total: 11.70 kcal Atomic # 6 Polarization: -3.23 SS G_CDS: -2.48 Total: -5.71 kcal Atomic # 7 Polarization: -66.03 SS G_CDS: 0.52 Total: -65.50 kcal Atomic # 14 Polarization: 24.01 SS G_CDS: -4.49 Total: 19.52 kcal Total LS contribution 3.41 Total: 3.41 kcal Total: -30.97 -5.61 -36.58 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260392399.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.795 kcal (2) G-P(sol) polarization free energy of solvation -30.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.582 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds