Wall clock time and date at job start Mon Mar 30 2020 01:52:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31806 * 119.12467 * 2 1 4 4 C 1.32322 * 120.81747 * 179.97438 * 3 2 1 5 5 C 1.38610 * 119.10154 * 0.02562 * 4 3 2 6 6 C 1.38577 * 118.40308 * 359.97438 * 5 4 3 7 7 C 1.50700 * 120.44713 * 180.02562 * 6 5 4 8 8 H 1.08996 * 109.47152 * 244.99387 * 7 6 5 9 9 N 1.46893 * 109.47552 * 5.00233 * 7 6 5 10 10 C 1.50713 * 109.46823 * 124.99911 * 7 6 5 11 11 H 1.07999 * 119.99879 * 354.54694 * 10 7 6 12 12 C 1.37876 * 119.99616 * 174.54536 * 10 7 6 13 13 N 1.31515 * 119.99939 * 165.51523 * 12 10 7 14 14 Si 1.86802 * 120.00120 * 345.23485 * 12 10 7 15 15 H 1.48502 * 109.46761 * 180.27664 * 14 12 10 16 16 H 1.48496 * 109.47316 * 300.27662 * 14 12 10 17 17 H 1.48497 * 109.47078 * 60.27574 * 14 12 10 18 18 N 1.31775 * 119.11811 * 180.25711 * 2 1 3 19 19 H 1.08996 * 109.47303 * 89.99519 * 1 2 3 20 20 H 1.08994 * 109.47572 * 210.00102 * 1 2 3 21 21 H 1.09007 * 109.46773 * 330.00109 * 1 2 3 22 22 H 1.07998 * 120.44540 * 180.02562 * 4 3 2 23 23 H 1.08002 * 120.80025 * 179.97438 * 5 4 3 24 24 H 1.00906 * 111.00223 * 54.10975 * 9 7 6 25 25 H 1.00892 * 111.00431 * 178.06834 * 9 7 6 26 26 H 0.97005 * 119.99287 * 354.42396 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1486 1.1514 0.0000 4 6 3.4712 1.1905 0.0005 5 6 4.1808 -0.0002 0.0005 6 6 3.4712 -1.1905 0.0005 7 6 4.1961 -2.5117 0.0011 8 1 3.9903 -3.0394 -0.9302 9 7 5.6411 -2.2775 0.1223 10 6 3.7227 -3.3438 1.1651 11 1 3.0385 -2.9229 1.8869 12 6 4.1631 -4.6425 1.3083 13 7 3.9903 -5.2734 2.4492 14 14 4.9982 -5.5085 -0.1207 15 1 5.3684 -6.8882 0.2849 16 1 4.0681 -5.5652 -1.2770 17 1 6.2218 -4.7606 -0.5060 18 7 2.1483 -1.1512 -0.0052 19 1 -0.3634 0.0001 -1.0276 20 1 -0.3634 -0.8899 0.5138 21 1 -0.3633 0.8901 0.5139 22 1 3.9907 2.1373 0.0009 23 1 5.2608 -0.0003 0.0005 24 1 5.8486 -1.7069 0.9283 25 1 6.1472 -3.1496 0.1567 26 1 3.6271 -4.8008 3.2145 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260392399.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:38 Heat of formation + Delta-G solvation = 19.111708 kcal Electronic energy + Delta-G solvation = -11725.322876 eV Core-core repulsion = 9609.884840 eV Total energy + Delta-G solvation = -2115.438036 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.091 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.94578 -37.36598 -34.51449 -34.35383 -32.94102 -29.28949 -28.21935 -25.73460 -23.88281 -21.92146 -19.92890 -18.55510 -17.83286 -16.26555 -16.00397 -15.96169 -15.47231 -14.98689 -14.48754 -14.24365 -14.01050 -13.40514 -13.32268 -13.05202 -12.33133 -11.97026 -11.73497 -11.47459 -11.42441 -10.73145 -10.25610 -10.08239 -9.60855 -8.77302 -6.52381 0.04210 0.22788 1.41298 1.50524 1.70514 2.40940 2.82689 2.96032 3.08968 3.21845 3.75880 4.03175 4.25297 4.32514 4.56201 4.62682 4.68093 4.93622 5.02533 5.07414 5.51367 5.65626 5.89432 6.15187 6.32259 6.41237 6.70097 7.24313 7.29556 8.51076 Molecular weight = 193.09amu Principal moments of inertia in cm(-1) A = 0.048936 B = 0.011706 C = 0.010465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.037685 B = 2391.450838 C = 2674.887636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.287 3.713 3 N -0.543 5.543 4 C 0.144 3.856 5 C -0.228 4.228 6 C 0.188 3.812 7 C 0.224 3.776 8 H 0.054 0.946 9 N -0.836 5.836 10 C -0.613 4.613 11 H 0.009 0.991 12 C -0.015 4.015 13 N -0.928 5.928 14 Si 1.086 2.914 15 H -0.286 1.286 16 H -0.274 1.274 17 H -0.228 1.228 18 N -0.546 5.546 19 H 0.099 0.901 20 H 0.075 0.925 21 H 0.099 0.901 22 H 0.209 0.791 23 H 0.173 0.827 24 H 0.335 0.665 25 H 0.339 0.661 26 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.881 10.451 -6.650 12.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.020 3.980 3 N -0.259 5.259 4 C -0.021 4.021 5 C -0.250 4.250 6 C 0.042 3.958 7 C 0.113 3.887 8 H 0.072 0.928 9 N -0.368 5.368 10 C -0.653 4.653 11 H 0.028 0.972 12 C -0.214 4.214 13 N -0.563 5.563 14 Si 0.907 3.093 15 H -0.212 1.212 16 H -0.199 1.199 17 H -0.152 1.152 18 N -0.262 5.262 19 H 0.118 0.882 20 H 0.094 0.906 21 H 0.118 0.882 22 H 0.226 0.774 23 H 0.190 0.810 24 H 0.147 0.853 25 H 0.155 0.845 26 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 0.458 9.369 -7.838 12.224 hybrid contribution -0.252 0.612 2.044 2.148 sum 0.206 9.980 -5.795 11.543 Atomic orbital electron populations 1.20585 0.83979 1.04222 1.04697 1.23914 0.99665 0.83377 0.91043 1.68268 1.11152 1.29928 1.16573 1.23866 0.89317 0.99671 0.89259 1.22994 1.04501 0.93126 1.04386 1.21966 0.89400 0.96928 0.87458 1.17973 0.86268 0.88329 0.96109 0.92801 1.59706 1.06870 1.22766 1.47487 1.22499 1.30979 1.01081 1.10720 0.97228 1.27340 0.96065 0.95491 1.02554 1.70957 1.43332 1.40165 1.01871 0.83522 0.77737 0.75889 0.72185 1.21218 1.19949 1.15224 1.68021 1.11135 1.31423 1.15606 0.88233 0.90606 0.88194 0.77413 0.80957 0.85349 0.84522 0.93951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.18 10.32 71.24 0.74 -1.44 15 2 C 0.29 10.87 7.64 138.75 1.06 11.93 15 3 N -0.54 -18.59 10.33 -187.85 -1.94 -20.53 15 4 C 0.14 4.31 11.31 84.71 0.96 5.26 15 5 C -0.23 -7.88 9.21 22.44 0.21 -7.67 15 6 C 0.19 8.25 6.12 42.56 0.26 8.51 15 7 C 0.22 10.54 2.75 43.43 0.12 10.66 15 8 H 0.05 2.62 6.86 -2.39 -0.02 2.60 15 9 N -0.84 -32.90 8.24 -174.95 -1.44 -34.35 15 10 C -0.61 -34.78 8.89 25.60 0.23 -34.56 15 11 H 0.01 0.61 7.99 -2.91 -0.02 0.59 15 12 C -0.02 -0.86 5.39 84.65 0.46 -0.41 15 13 N -0.93 -57.38 13.69 21.45 0.29 -57.09 15 14 Si 1.09 47.76 26.40 68.60 1.81 49.57 15 15 H -0.29 -12.75 7.11 99.48 0.71 -12.04 15 16 H -0.27 -11.72 7.11 99.48 0.71 -11.01 15 17 H -0.23 -8.37 5.67 99.48 0.56 -7.81 15 18 N -0.55 -24.76 10.05 -176.03 -1.77 -26.53 15 19 H 0.10 2.40 8.14 -2.39 -0.02 2.38 15 20 H 0.08 2.25 8.14 -2.39 -0.02 2.23 15 21 H 0.10 2.37 8.14 -2.38 -0.02 2.35 15 22 H 0.21 4.00 8.06 -2.91 -0.02 3.98 15 23 H 0.17 5.06 6.65 -2.91 -0.02 5.04 15 24 H 0.33 12.46 7.98 -89.69 -0.72 11.75 15 25 H 0.34 13.34 5.46 -89.70 -0.49 12.85 15 26 H 0.25 15.99 8.73 -92.70 -0.81 15.19 15 Total: -1.00 -69.35 226.37 0.80 -68.55 By element: Atomic # 1 Polarization: 28.27 SS G_CDS: -0.18 Total: 28.09 kcal Atomic # 6 Polarization: -11.74 SS G_CDS: 4.02 Total: -7.72 kcal Atomic # 7 Polarization: -133.63 SS G_CDS: -4.86 Total: -138.49 kcal Atomic # 14 Polarization: 47.76 SS G_CDS: 1.81 Total: 49.57 kcal Total: -69.35 0.80 -68.55 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260392399.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.658 kcal (2) G-P(sol) polarization free energy of solvation -69.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.547 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds