Wall clock time and date at job start Mon Mar 30 2020 02:14:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.34858 * 125.88994 * 2 1 4 4 C 1.40892 * 107.41686 * 180.25251 * 3 2 1 5 5 C 1.50700 * 126.29416 * 179.73611 * 4 3 2 6 6 H 1.08995 * 109.47073 * 180.02562 * 5 4 3 7 7 C 1.52998 * 109.46735 * 300.00125 * 5 4 3 8 8 C 1.50698 * 109.46864 * 59.99912 * 5 4 3 9 9 H 1.08004 * 120.00311 * 0.02562 * 8 5 4 10 10 C 1.37879 * 120.00104 * 180.02562 * 8 5 4 11 11 N 1.31515 * 120.00060 * 180.02562 * 10 8 5 12 12 Si 1.86800 * 119.99526 * 0.02562 * 10 8 5 13 13 H 1.48500 * 109.47219 * 90.00014 * 12 10 8 14 14 H 1.48504 * 109.46747 * 210.00013 * 12 10 8 15 15 H 1.48498 * 109.47328 * 329.99507 * 12 10 8 16 16 C 1.34851 * 107.41480 * 359.73710 * 4 3 2 17 17 N 1.36343 * 125.89186 * 179.80200 * 2 1 3 18 18 C 1.46499 * 125.63539 * 359.97438 * 17 2 1 19 19 H 1.09000 * 109.47329 * 270.20053 * 1 2 3 20 20 H 1.09002 * 109.47208 * 30.20115 * 1 2 3 21 21 H 1.09004 * 109.47485 * 150.20018 * 1 2 3 22 22 H 1.08001 * 126.28962 * 359.97438 * 3 2 1 23 23 H 1.09008 * 109.47005 * 179.97438 * 7 5 4 24 24 H 1.08997 * 109.47632 * 299.99588 * 7 5 4 25 25 H 1.09004 * 109.47370 * 60.00272 * 7 5 4 26 26 H 0.97003 * 119.99601 * 179.97438 * 11 10 8 27 27 H 1.08003 * 125.88722 * 179.97438 * 16 4 3 28 28 H 1.09002 * 109.47391 * 269.72164 * 18 17 2 29 29 H 1.09001 * 109.46813 * 149.72220 * 18 17 2 30 30 H 1.09004 * 109.47041 * 29.72347 * 18 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2975 1.0925 0.0000 4 6 3.6338 0.6461 -0.0059 5 6 4.8647 1.5155 -0.0137 6 1 5.7543 0.8857 -0.0175 7 6 4.8588 2.3966 -1.2645 8 6 4.8713 2.3878 1.2152 9 1 4.0651 2.3191 1.9305 10 6 5.9067 3.2735 1.4264 11 7 5.9127 4.0343 2.4991 12 14 7.3008 3.3927 0.1888 13 1 6.9664 4.4133 -0.8367 14 1 8.5511 3.7845 0.8879 15 1 7.4933 2.0751 -0.4684 16 6 3.6089 -0.7022 -0.0034 17 7 2.3063 -1.1045 0.0038 18 6 1.8421 -2.4940 0.0092 19 1 -0.3634 0.0036 1.0276 20 1 -0.3634 0.8882 -0.5170 21 1 -0.3634 -0.8918 -0.5107 22 1 1.9670 2.1207 -0.0004 23 1 5.7490 3.0258 -1.2699 24 1 4.8541 1.7658 -2.1533 25 1 3.9692 3.0264 -1.2611 26 1 6.6413 4.6572 2.6479 27 1 4.4721 -1.3513 -0.0070 28 1 1.7320 -2.8365 1.0381 29 1 2.5686 -3.1217 -0.5069 30 1 0.8803 -2.5577 -0.4998 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260468508.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:52 Heat of formation + Delta-G solvation = 45.070878 kcal Electronic energy + Delta-G solvation = -11958.075151 eV Core-core repulsion = 9947.303132 eV Total energy + Delta-G solvation = -2010.772019 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 193.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.54012 -34.68898 -32.07410 -31.30958 -30.17714 -25.65446 -25.45401 -24.76202 -21.40265 -18.89844 -18.13355 -16.34502 -15.88821 -14.97459 -14.47570 -13.59484 -13.22850 -12.90674 -12.67998 -12.38587 -12.09739 -12.04455 -11.74684 -11.68984 -11.14351 -10.86473 -10.68297 -10.14397 -9.76509 -9.23212 -8.90885 -8.41644 -7.58391 -7.10573 -5.91609 -3.88113 2.89508 3.38193 3.47494 3.50857 3.52343 3.93300 4.54591 4.99023 5.29251 5.34069 5.41000 5.46447 5.55206 5.84019 5.86756 6.10159 6.25898 6.46520 6.59096 6.73722 6.87496 7.02816 7.17421 7.30131 7.64096 7.84417 7.94918 8.08071 8.13774 8.75147 9.16617 9.71503 11.22048 Molecular weight = 193.12amu Principal moments of inertia in cm(-1) A = 0.056864 B = 0.009993 C = 0.009579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.283560 B = 2801.427808 C = 2922.304307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.013 4.013 3 C -0.174 4.174 4 C -0.098 4.098 5 C 0.068 3.932 6 H 0.027 0.973 7 C -0.138 4.138 8 C -0.494 4.494 9 H 0.074 0.926 10 C 0.064 3.936 11 N -0.907 5.907 12 Si 0.889 3.111 13 H -0.281 1.281 14 H -0.300 1.300 15 H -0.267 1.267 16 C -0.047 4.047 17 N -0.459 5.459 18 C 0.080 3.920 19 H 0.062 0.938 20 H 0.073 0.927 21 H 0.052 0.948 22 H 0.130 0.870 23 H 0.035 0.965 24 H 0.026 0.974 25 H 0.051 0.949 26 H 0.261 0.739 27 H 0.151 0.849 28 H 0.063 0.937 29 H 0.075 0.925 30 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.767 -10.440 -6.695 14.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.123 4.123 3 C -0.200 4.200 4 C -0.105 4.105 5 C 0.048 3.952 6 H 0.045 0.955 7 C -0.195 4.195 8 C -0.533 4.533 9 H 0.092 0.908 10 C -0.136 4.136 11 N -0.546 5.546 12 Si 0.720 3.280 13 H -0.208 1.208 14 H -0.228 1.228 15 H -0.193 1.193 16 C -0.173 4.173 17 N -0.139 5.139 18 C -0.062 4.062 19 H 0.081 0.919 20 H 0.092 0.908 21 H 0.071 0.929 22 H 0.148 0.852 23 H 0.053 0.947 24 H 0.045 0.955 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.169 0.831 28 H 0.081 0.919 29 H 0.093 0.907 30 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -7.788 -10.674 -6.593 14.767 hybrid contribution 0.858 0.136 -0.498 1.002 sum -6.929 -10.538 -7.091 14.469 Atomic orbital electron populations 1.20171 0.89253 1.02012 1.01715 1.20186 0.92732 0.86324 1.13083 1.20584 0.92664 0.96960 1.09767 1.19761 0.95533 0.92016 1.03170 1.17708 0.90411 0.92810 0.94226 0.95533 1.22079 1.00337 0.99401 0.97684 1.21040 1.08254 1.18881 1.05086 0.90791 1.25028 0.97809 0.95452 0.95304 1.69911 1.32825 1.24727 1.27157 0.86828 0.81456 0.78713 0.80977 1.20807 1.22848 1.19253 1.21513 0.85057 0.95764 1.14997 1.43625 1.06036 1.04778 1.59422 1.21791 1.00782 0.81387 1.02255 0.91912 0.90789 0.92879 0.85235 0.94669 0.95468 0.92972 0.92926 0.83123 0.91890 0.90664 0.90802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.96 10.10 36.00 0.36 -0.60 16 2 C -0.01 -0.24 6.89 -81.79 -0.56 -0.80 16 3 C -0.17 -3.70 10.33 -39.78 -0.41 -4.11 16 4 C -0.10 -2.24 4.76 -104.82 -0.50 -2.74 16 5 C 0.07 1.71 2.26 -92.93 -0.21 1.50 16 6 H 0.03 0.68 7.17 -51.93 -0.37 0.30 16 7 C -0.14 -3.21 8.57 37.16 0.32 -2.89 16 8 C -0.49 -14.57 9.01 -34.44 -0.31 -14.88 16 9 H 0.07 2.39 7.98 -52.48 -0.42 1.98 16 10 C 0.06 1.92 5.45 -17.82 -0.10 1.82 16 11 N -0.91 -28.72 13.96 55.43 0.77 -27.95 16 12 Si 0.89 22.86 24.37 -169.99 -4.14 18.71 16 13 H -0.28 -7.04 6.87 56.52 0.39 -6.65 16 14 H -0.30 -7.70 7.11 56.52 0.40 -7.30 16 15 H -0.27 -6.58 6.53 56.52 0.37 -6.21 16 16 C -0.05 -0.92 11.33 -16.75 -0.19 -1.11 16 17 N -0.46 -7.78 3.15 -119.90 -0.38 -8.16 16 18 C 0.08 0.91 10.92 59.85 0.65 1.57 16 19 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 20 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 21 H 0.05 0.57 7.05 -51.93 -0.37 0.20 16 22 H 0.13 2.76 8.06 -52.49 -0.42 2.34 16 23 H 0.03 0.84 3.27 -51.92 -0.17 0.67 16 24 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.05 1.19 8.04 -51.93 -0.42 0.77 16 26 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 27 H 0.15 2.61 8.06 -52.48 -0.42 2.19 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.07 0.69 7.01 -51.93 -0.36 0.33 16 LS Contribution 247.25 15.07 3.73 3.73 Total: -1.00 -33.17 247.25 -5.21 -38.38 By element: Atomic # 1 Polarization: 1.77 SS G_CDS: -4.25 Total: -2.48 kcal Atomic # 6 Polarization: -21.30 SS G_CDS: -0.95 Total: -22.24 kcal Atomic # 7 Polarization: -36.50 SS G_CDS: 0.40 Total: -36.10 kcal Atomic # 14 Polarization: 22.86 SS G_CDS: -4.14 Total: 18.71 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -33.17 -5.21 -38.38 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260468508.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.455 kcal (2) G-P(sol) polarization free energy of solvation -33.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.384 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds