Wall clock time and date at job start Mon Mar 30 2020 02:14:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.34858 * 125.88994 * 2 1 4 4 C 1.40892 * 107.41686 * 180.25251 * 3 2 1 5 5 C 1.50700 * 126.29416 * 179.73611 * 4 3 2 6 6 H 1.08995 * 109.47073 * 180.02562 * 5 4 3 7 7 C 1.52998 * 109.46735 * 300.00125 * 5 4 3 8 8 C 1.50698 * 109.46864 * 59.99912 * 5 4 3 9 9 H 1.08004 * 120.00311 * 0.02562 * 8 5 4 10 10 C 1.37879 * 120.00104 * 180.02562 * 8 5 4 11 11 N 1.31515 * 120.00060 * 180.02562 * 10 8 5 12 12 Si 1.86800 * 119.99526 * 0.02562 * 10 8 5 13 13 H 1.48500 * 109.47219 * 90.00014 * 12 10 8 14 14 H 1.48504 * 109.46747 * 210.00013 * 12 10 8 15 15 H 1.48498 * 109.47328 * 329.99507 * 12 10 8 16 16 C 1.34851 * 107.41480 * 359.73710 * 4 3 2 17 17 N 1.36343 * 125.89186 * 179.80200 * 2 1 3 18 18 C 1.46499 * 125.63539 * 359.97438 * 17 2 1 19 19 H 1.09000 * 109.47329 * 270.20053 * 1 2 3 20 20 H 1.09002 * 109.47208 * 30.20115 * 1 2 3 21 21 H 1.09004 * 109.47485 * 150.20018 * 1 2 3 22 22 H 1.08001 * 126.28962 * 359.97438 * 3 2 1 23 23 H 1.09008 * 109.47005 * 179.97438 * 7 5 4 24 24 H 1.08997 * 109.47632 * 299.99588 * 7 5 4 25 25 H 1.09004 * 109.47370 * 60.00272 * 7 5 4 26 26 H 0.97003 * 119.99601 * 179.97438 * 11 10 8 27 27 H 1.08003 * 125.88722 * 179.97438 * 16 4 3 28 28 H 1.09002 * 109.47391 * 269.72164 * 18 17 2 29 29 H 1.09001 * 109.46813 * 149.72220 * 18 17 2 30 30 H 1.09004 * 109.47041 * 29.72347 * 18 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2975 1.0925 0.0000 4 6 3.6338 0.6461 -0.0059 5 6 4.8647 1.5155 -0.0137 6 1 5.7543 0.8857 -0.0175 7 6 4.8588 2.3966 -1.2645 8 6 4.8713 2.3878 1.2152 9 1 4.0651 2.3191 1.9305 10 6 5.9067 3.2735 1.4264 11 7 5.9127 4.0343 2.4991 12 14 7.3008 3.3927 0.1888 13 1 6.9664 4.4133 -0.8367 14 1 8.5511 3.7845 0.8879 15 1 7.4933 2.0751 -0.4684 16 6 3.6089 -0.7022 -0.0034 17 7 2.3063 -1.1045 0.0038 18 6 1.8421 -2.4940 0.0092 19 1 -0.3634 0.0036 1.0276 20 1 -0.3634 0.8882 -0.5170 21 1 -0.3634 -0.8918 -0.5107 22 1 1.9670 2.1207 -0.0004 23 1 5.7490 3.0258 -1.2699 24 1 4.8541 1.7658 -2.1533 25 1 3.9692 3.0264 -1.2611 26 1 6.6413 4.6572 2.6479 27 1 4.4721 -1.3513 -0.0070 28 1 1.7320 -2.8365 1.0381 29 1 2.5686 -3.1217 -0.5069 30 1 0.8803 -2.5577 -0.4998 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260468508.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:51 Heat of formation + Delta-G solvation = 23.518426 kcal Electronic energy + Delta-G solvation = -11959.009735 eV Core-core repulsion = 9947.303132 eV Total energy + Delta-G solvation = -2011.706603 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 193.116 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.96964 -36.57247 -33.96247 -32.71513 -31.73164 -27.09790 -26.81591 -26.73762 -23.19601 -20.40197 -19.70370 -18.49740 -17.40653 -16.49740 -16.09527 -15.00724 -14.92595 -14.69822 -14.05231 -13.86235 -13.53977 -13.37542 -13.15688 -13.10228 -12.82175 -12.52008 -12.37886 -12.09330 -11.69678 -11.19504 -11.05208 -10.68424 -9.07715 -8.60878 -8.23246 -6.25209 1.33705 1.38564 1.48222 1.50642 2.28746 2.29848 2.37815 3.11974 4.10265 4.15215 4.35399 4.47688 4.49245 4.59604 4.69377 4.74272 4.85280 4.86959 5.03885 5.07947 5.15559 5.18882 5.47010 5.57318 5.74196 5.95209 6.24144 6.48509 6.53554 6.75792 6.84114 7.38351 8.94241 Molecular weight = 193.12amu Principal moments of inertia in cm(-1) A = 0.056864 B = 0.009993 C = 0.009579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.283560 B = 2801.427808 C = 2922.304307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.004 3.996 3 C -0.222 4.222 4 C -0.145 4.145 5 C 0.069 3.931 6 H 0.026 0.974 7 C -0.132 4.132 8 C -0.498 4.498 9 H 0.023 0.977 10 C 0.004 3.996 11 N -0.956 5.956 12 Si 0.957 3.043 13 H -0.268 1.268 14 H -0.298 1.298 15 H -0.246 1.246 16 C -0.045 4.045 17 N -0.453 5.453 18 C 0.070 3.930 19 H 0.072 0.928 20 H 0.080 0.920 21 H 0.086 0.914 22 H 0.109 0.891 23 H 0.030 0.970 24 H 0.056 0.944 25 H 0.043 0.957 26 H 0.264 0.736 27 H 0.172 0.828 28 H 0.076 0.924 29 H 0.096 0.904 30 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.227 -12.752 -8.562 17.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.109 4.109 3 C -0.247 4.247 4 C -0.151 4.151 5 C 0.050 3.950 6 H 0.044 0.956 7 C -0.189 4.189 8 C -0.536 4.536 9 H 0.041 0.959 10 C -0.192 4.192 11 N -0.598 5.598 12 Si 0.783 3.217 13 H -0.194 1.194 14 H -0.226 1.226 15 H -0.170 1.170 16 C -0.173 4.173 17 N -0.130 5.130 18 C -0.070 4.070 19 H 0.091 0.909 20 H 0.099 0.901 21 H 0.104 0.896 22 H 0.127 0.873 23 H 0.048 0.952 24 H 0.075 0.925 25 H 0.062 0.938 26 H 0.073 0.927 27 H 0.190 0.810 28 H 0.094 0.906 29 H 0.114 0.886 30 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -8.273 -13.027 -8.472 17.605 hybrid contribution 0.861 0.777 0.165 1.171 sum -7.413 -12.251 -8.307 16.554 Atomic orbital electron populations 1.20309 0.85658 1.04037 1.02937 1.20730 0.94805 0.85579 1.09742 1.20589 0.93268 0.97419 1.13449 1.19712 0.95108 0.93514 1.06804 1.17585 0.91923 0.92710 0.92829 0.95612 1.21972 0.99647 0.99311 0.97983 1.21267 1.06653 1.19759 1.05967 0.95879 1.25948 1.00859 0.94947 0.97424 1.70073 1.34172 1.25971 1.29567 0.85730 0.77466 0.79975 0.78482 1.19427 1.22620 1.16955 1.21716 0.86990 0.94909 1.13731 1.43969 1.04992 1.06856 1.57183 1.22224 1.02704 0.78167 1.03910 0.90931 0.90121 0.89559 0.87294 0.95176 0.92489 0.93757 0.92734 0.81036 0.90584 0.88568 0.88027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.66 10.10 71.23 0.72 -0.94 16 2 C 0.00 0.12 6.89 41.08 0.28 0.41 16 3 C -0.22 -9.65 10.33 22.14 0.23 -9.42 16 4 C -0.15 -6.65 4.76 -19.99 -0.10 -6.74 16 5 C 0.07 3.51 2.26 -12.29 -0.03 3.48 16 6 H 0.03 1.30 7.17 -2.39 -0.02 1.28 16 7 C -0.13 -6.06 8.57 71.98 0.62 -5.44 16 8 C -0.50 -30.64 9.01 25.60 0.23 -30.41 16 9 H 0.02 1.59 7.98 -2.91 -0.02 1.57 16 10 C 0.00 0.22 5.45 84.66 0.46 0.68 16 11 N -0.96 -62.87 13.96 21.45 0.30 -62.58 16 12 Si 0.96 47.34 24.37 68.60 1.67 49.02 16 13 H -0.27 -12.65 6.87 99.48 0.68 -11.96 16 14 H -0.30 -14.55 7.11 99.48 0.71 -13.84 16 15 H -0.25 -11.22 6.53 99.48 0.65 -10.57 16 16 C -0.05 -1.70 11.33 83.21 0.94 -0.76 16 17 N -0.45 -14.08 3.15 -533.24 -1.68 -15.76 16 18 C 0.07 1.28 10.92 127.77 1.40 2.67 16 19 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 20 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 21 H 0.09 1.43 7.05 -2.39 -0.02 1.41 16 22 H 0.11 4.97 8.06 -2.91 -0.02 4.95 16 23 H 0.03 1.38 3.27 -2.38 -0.01 1.38 16 24 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 25 H 0.04 2.04 8.04 -2.38 -0.02 2.03 16 26 H 0.26 16.17 8.31 -92.71 -0.77 15.40 16 27 H 0.17 5.55 8.06 -2.91 -0.02 5.53 16 28 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.10 1.33 7.01 -2.38 -0.02 1.32 16 Total: -1.00 -75.23 247.25 6.07 -69.16 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: 1.02 Total: 6.62 kcal Atomic # 6 Polarization: -51.22 SS G_CDS: 4.76 Total: -46.46 kcal Atomic # 7 Polarization: -76.96 SS G_CDS: -1.38 Total: -78.34 kcal Atomic # 14 Polarization: 47.34 SS G_CDS: 1.67 Total: 49.02 kcal Total: -75.23 6.07 -69.16 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260468508.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.679 kcal (2) G-P(sol) polarization free energy of solvation -75.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.160 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds