Wall clock time and date at job start Mon Mar 30 2020 01:55:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50695 * 109.47102 * 2 1 4 4 N 1.31793 * 120.56667 * 269.98097 * 3 2 1 5 5 C 1.32776 * 121.01507 * 180.02562 * 4 3 2 6 6 N 1.37931 * 118.91448 * 180.02562 * 5 4 3 7 7 N 1.32796 * 122.17108 * 359.97438 * 5 4 3 8 8 C 1.31777 * 121.01224 * 0.02562 * 7 5 4 9 9 C 1.41170 * 120.56087 * 90.00611 * 3 2 1 10 10 C 1.41254 * 120.97101 * 359.70368 * 9 3 2 11 11 H 1.08005 * 120.00113 * 335.40955 * 10 9 3 12 12 C 1.39886 * 120.00260 * 155.41110 * 10 9 3 13 13 N 1.30897 * 119.99611 * 343.72376 * 12 10 9 14 14 Si 1.86798 * 120.00002 * 163.72330 * 12 10 9 15 15 H 1.48495 * 109.47221 * 0.02562 * 14 12 10 16 16 H 1.48508 * 109.46819 * 119.99841 * 14 12 10 17 17 H 1.48496 * 109.47069 * 239.99610 * 14 12 10 18 18 H 1.08991 * 109.47280 * 59.99239 * 1 2 3 19 19 H 1.08998 * 109.46965 * 179.97438 * 1 2 3 20 20 H 1.09006 * 109.46623 * 299.99600 * 1 2 3 21 21 H 1.09006 * 109.46623 * 240.00399 * 2 1 3 22 22 H 1.08991 * 109.47280 * 120.00761 * 2 1 3 23 23 H 0.97002 * 119.99795 * 359.97438 * 6 5 4 24 24 H 0.96998 * 119.99700 * 179.97438 * 6 5 4 25 25 H 1.07997 * 120.56671 * 179.97438 * 8 7 5 26 26 H 0.96994 * 120.00000 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2561 2.0525 -1.1348 5 6 2.6992 3.3042 -1.1452 6 7 2.9181 3.9240 -2.3577 7 7 2.9374 3.9792 -0.0267 8 6 2.7420 3.4275 1.1540 9 6 2.2717 2.0975 1.2156 10 6 2.0415 1.4647 2.4573 11 1 1.3357 0.6500 2.5257 12 6 2.7276 1.8932 3.5986 13 7 3.7944 2.6421 3.4782 14 14 2.1213 1.3968 5.2943 15 1 0.9058 0.5547 5.1584 16 1 3.1813 0.6261 5.9929 17 1 1.7955 2.6143 6.0795 18 1 -0.3633 0.5139 -0.8898 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3633 0.5138 0.8901 21 1 1.8933 -0.5138 -0.8901 22 1 1.8934 -0.5139 0.8898 23 1 2.7489 3.4457 -3.1845 24 1 3.2413 4.8382 -2.3836 25 1 2.9385 3.9830 2.0590 26 1 4.2704 2.9389 4.2695 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260488696.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:36 Heat of formation + Delta-G solvation = 26.571057 kcal Electronic energy + Delta-G solvation = -11814.550648 eV Core-core repulsion = 9699.436074 eV Total energy + Delta-G solvation = -2115.114575 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.091 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.13460 -34.83841 -33.63879 -32.50544 -30.65408 -29.04975 -25.07348 -23.67152 -21.68495 -20.36578 -17.44278 -16.67731 -15.96757 -15.09100 -14.34694 -13.68092 -13.46908 -13.08343 -12.99164 -12.07259 -11.83040 -11.56439 -11.27386 -11.05082 -10.61023 -10.56057 -10.23016 -9.65328 -9.32258 -9.04141 -8.91881 -7.58997 -7.08410 -6.78589 -4.28108 2.68967 2.83855 3.06683 3.11517 3.19938 3.90484 4.55867 4.69456 5.62127 5.67319 5.90238 6.12392 6.25331 6.45492 6.52545 6.60695 6.87881 6.97866 7.11665 7.14378 7.49542 7.68388 8.22483 8.39092 8.46986 8.54835 8.74865 9.10446 9.98804 10.15452 Molecular weight = 193.09amu Principal moments of inertia in cm(-1) A = 0.038678 B = 0.013974 C = 0.010708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.751433 B = 2003.263756 C = 2614.338114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.048 4.048 3 C 0.079 3.921 4 N -0.549 5.549 5 C 0.438 3.562 6 N -0.853 5.853 7 N -0.557 5.557 8 C 0.116 3.884 9 C -0.017 4.017 10 C -0.443 4.443 11 H 0.084 0.916 12 C 0.071 3.929 13 N -0.804 5.804 14 Si 0.911 3.089 15 H -0.260 1.260 16 H -0.275 1.275 17 H -0.272 1.272 18 H 0.046 0.954 19 H 0.046 0.954 20 H 0.056 0.944 21 H 0.057 0.943 22 H 0.077 0.923 23 H 0.395 0.605 24 H 0.396 0.604 25 H 0.161 0.839 26 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.844 -1.747 -1.402 3.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.086 4.086 3 C -0.069 4.069 4 N -0.270 5.270 5 C 0.083 3.917 6 N -0.406 5.406 7 N -0.277 5.277 8 C -0.055 4.055 9 C -0.024 4.024 10 C -0.474 4.474 11 H 0.102 0.898 12 C -0.145 4.145 13 N -0.431 5.431 14 Si 0.735 3.265 15 H -0.184 1.184 16 H -0.200 1.200 17 H -0.197 1.197 18 H 0.066 0.934 19 H 0.065 0.935 20 H 0.075 0.925 21 H 0.076 0.924 22 H 0.095 0.905 23 H 0.223 0.777 24 H 0.224 0.776 25 H 0.178 0.822 26 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -2.515 -1.243 -2.067 3.484 hybrid contribution -0.130 -0.331 1.314 1.361 sum -2.645 -1.573 -0.753 3.169 Atomic orbital electron populations 1.21655 0.96058 1.00194 1.01716 1.20032 0.94879 0.92057 1.01609 1.21104 1.02949 0.95420 0.87454 1.66952 1.18749 1.09106 1.32159 1.18717 0.99426 0.87306 0.86282 1.41008 1.79346 1.16807 1.03414 1.67401 1.21982 1.39649 0.98718 1.23218 0.97090 0.92353 0.92822 1.18866 0.96054 0.93568 0.93958 1.19314 1.21029 1.15891 0.91191 0.89789 1.25926 0.93267 0.93707 1.01614 1.69762 1.12883 1.28248 1.32183 0.86207 0.79878 0.79279 0.81092 1.18353 1.20036 1.19730 0.93444 0.93534 0.92517 0.92430 0.90451 0.77704 0.77570 0.82204 0.90691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 9.89 37.16 0.37 -2.12 15 2 C -0.05 -0.98 5.71 -27.88 -0.16 -1.14 15 3 C 0.08 1.96 6.15 -81.50 -0.50 1.46 15 4 N -0.55 -13.70 10.36 -9.61 -0.10 -13.80 15 5 C 0.44 10.79 8.65 -322.74 -2.79 8.00 15 6 N -0.85 -16.44 9.04 29.77 0.27 -16.17 15 7 N -0.56 -14.55 10.42 -13.36 -0.14 -14.69 15 8 C 0.12 3.12 9.99 -16.45 -0.16 2.95 15 9 C -0.02 -0.45 5.59 -106.51 -0.60 -1.05 15 10 C -0.44 -11.17 8.23 -37.82 -0.31 -11.49 15 11 H 0.08 2.01 6.81 -52.48 -0.36 1.65 15 12 C 0.07 1.73 5.20 -17.33 -0.09 1.64 15 13 N -0.80 -20.28 10.95 55.54 0.61 -19.67 15 14 Si 0.91 18.04 29.59 -169.99 -5.03 13.01 15 15 H -0.26 -5.06 7.11 56.52 0.40 -4.66 15 16 H -0.27 -5.40 7.11 56.52 0.40 -5.00 15 17 H -0.27 -5.34 7.11 56.52 0.40 -4.93 15 18 H 0.05 0.86 8.14 -51.93 -0.42 0.44 15 19 H 0.05 0.70 8.14 -51.93 -0.42 0.27 15 20 H 0.06 1.06 8.00 -51.93 -0.42 0.65 15 21 H 0.06 1.12 8.14 -51.93 -0.42 0.70 15 22 H 0.08 1.58 6.88 -51.93 -0.36 1.23 15 23 H 0.40 6.64 8.94 -40.82 -0.36 6.28 15 24 H 0.40 6.75 8.94 -40.82 -0.36 6.39 15 25 H 0.16 4.33 6.24 -52.49 -0.33 4.00 15 26 H 0.28 6.47 8.30 -40.82 -0.34 6.13 15 LS Contribution 229.62 15.07 3.46 3.46 Total: -1.00 -28.71 229.62 -7.77 -36.48 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: -2.59 Total: 13.13 kcal Atomic # 6 Polarization: 2.49 SS G_CDS: -4.25 Total: -1.75 kcal Atomic # 7 Polarization: -64.96 SS G_CDS: 0.64 Total: -64.32 kcal Atomic # 14 Polarization: 18.04 SS G_CDS: -5.03 Total: 13.01 kcal Total LS contribution 3.46 Total: 3.46 kcal Total: -28.71 -7.77 -36.48 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260488696.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.050 kcal (2) G-P(sol) polarization free energy of solvation -28.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.479 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds