Wall clock time and date at job start Mon Mar 30 2020 01:53:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31793 * 119.08460 * 2 1 4 4 C 1.32549 * 121.00745 * 179.73471 * 3 2 1 5 5 C 1.38119 * 119.19980 * 0.56185 * 4 3 2 6 6 C 1.50699 * 120.83256 * 179.72259 * 5 4 3 7 7 C 1.50706 * 109.46817 * 264.72312 * 6 5 4 8 8 H 1.07995 * 120.00167 * 359.72198 * 7 6 5 9 9 C 1.37879 * 119.99394 * 179.97438 * 7 6 5 10 10 N 1.31514 * 120.00338 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 119.99424 * 180.02562 * 9 7 6 12 12 H 1.48492 * 109.47487 * 359.97438 * 11 9 7 13 13 H 1.48500 * 109.47233 * 120.00158 * 11 9 7 14 14 H 1.48508 * 109.46883 * 239.99963 * 11 9 7 15 15 C 1.39625 * 118.33226 * 359.45520 * 5 4 3 16 16 N 1.38545 * 120.53106 * 180.25200 * 15 5 4 17 17 N 1.31747 * 119.08413 * 180.02562 * 2 1 3 18 18 H 1.09001 * 109.47087 * 269.98046 * 1 2 3 19 19 H 1.08996 * 109.47127 * 29.97463 * 1 2 3 20 20 H 1.09001 * 109.47410 * 149.98231 * 1 2 3 21 21 H 1.07998 * 120.39595 * 180.30540 * 4 3 2 22 22 H 1.09000 * 109.47247 * 144.72375 * 6 5 4 23 23 H 1.09001 * 109.47358 * 24.71801 * 6 5 4 24 24 H 0.96996 * 119.99730 * 179.97438 * 10 9 7 25 25 H 0.97004 * 119.99555 * 359.97438 * 16 15 5 26 26 H 0.96994 * 119.99918 * 179.97438 * 16 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1477 1.1517 0.0000 4 6 3.4724 1.1962 0.0053 5 6 4.1863 0.0139 -0.0010 6 6 5.6933 0.0216 -0.0016 7 6 6.1956 -0.0994 -1.4173 8 1 5.4939 -0.1789 -2.2344 9 6 7.5512 -0.1139 -1.6689 10 7 8.4058 -0.0226 -0.6734 11 14 8.1738 -0.2631 -3.4237 12 1 7.0190 -0.3509 -4.3530 13 1 8.9923 0.9290 -3.7616 14 1 9.0055 -1.4868 -3.5514 15 6 3.4768 -1.1886 -0.0010 16 7 4.1469 -2.4013 -0.0020 17 7 2.1474 -1.1513 -0.0005 18 1 -0.3633 -0.0004 1.0277 19 1 -0.3633 0.8902 -0.5134 20 1 -0.3634 -0.8898 -0.5141 21 1 3.9872 2.1456 0.0102 22 1 6.0612 -0.8185 0.5875 23 1 6.0521 0.9547 0.4327 24 1 9.3594 -0.0332 -0.8504 25 1 5.1168 -2.4194 -0.0030 26 1 3.6463 -3.2320 -0.0016 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260526795.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:02 Heat of formation + Delta-G solvation = 29.953285 kcal Electronic energy + Delta-G solvation = -11582.196526 eV Core-core repulsion = 9467.228615 eV Total energy + Delta-G solvation = -2114.967910 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.091 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.23693 -35.31013 -33.74593 -32.38277 -30.48642 -29.51310 -26.14677 -23.27540 -22.84200 -20.73100 -17.62729 -16.66684 -16.42211 -14.93095 -14.73573 -14.56903 -13.64353 -13.14246 -12.68345 -12.52592 -12.13996 -12.05470 -11.44965 -11.08327 -10.96481 -10.78396 -10.45175 -9.69177 -9.43865 -8.93075 -8.63056 -8.39242 -7.39247 -6.14444 -4.20119 1.84143 2.11145 3.22601 3.31352 3.36507 4.00991 4.33533 4.60507 4.75742 5.09750 5.19197 5.63365 5.83740 5.87610 5.92168 6.13164 6.43794 6.49449 7.09151 7.38552 7.47378 7.59832 7.80294 7.90154 8.19104 8.33824 8.85698 8.99828 9.45467 10.93978 Molecular weight = 193.09amu Principal moments of inertia in cm(-1) A = 0.055680 B = 0.009663 C = 0.009435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 502.748818 B = 2896.850180 C = 2966.889318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.319 3.681 3 N -0.565 5.565 4 C 0.151 3.849 5 C -0.202 4.202 6 C 0.066 3.934 7 C -0.515 4.515 8 H 0.055 0.945 9 C 0.061 3.939 10 N -0.891 5.891 11 Si 0.894 3.106 12 H -0.273 1.273 13 H -0.282 1.282 14 H -0.283 1.283 15 C 0.434 3.566 16 N -0.832 5.832 17 N -0.588 5.588 18 H 0.075 0.925 19 H 0.078 0.922 20 H 0.075 0.925 21 H 0.159 0.841 22 H 0.026 0.974 23 H 0.033 0.967 24 H 0.263 0.737 25 H 0.421 0.579 26 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.647 -2.095 1.427 9.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.050 3.950 3 N -0.284 5.284 4 C -0.008 4.008 5 C -0.211 4.211 6 C 0.028 3.972 7 C -0.553 4.553 8 H 0.073 0.927 9 C -0.141 4.141 10 N -0.530 5.530 11 Si 0.722 3.278 12 H -0.198 1.198 13 H -0.208 1.208 14 H -0.209 1.209 15 C 0.188 3.812 16 N -0.377 5.377 17 N -0.315 5.315 18 H 0.093 0.907 19 H 0.097 0.903 20 H 0.094 0.906 21 H 0.176 0.824 22 H 0.044 0.956 23 H 0.051 0.949 24 H 0.072 0.928 25 H 0.254 0.746 26 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -9.400 -2.030 1.462 9.727 hybrid contribution 1.701 -0.447 -0.996 2.022 sum -7.698 -2.477 0.466 8.101 Atomic orbital electron populations 1.20380 0.86974 1.03108 1.02819 1.22558 0.97046 0.83187 0.92209 1.68114 1.10338 1.29712 1.20247 1.22715 0.88606 0.98052 0.91453 1.21697 1.01236 0.92385 1.05768 1.18050 0.83055 0.98515 0.97622 1.21095 0.91370 1.50930 0.91912 0.92651 1.24999 0.96854 0.95015 0.97222 1.69954 1.02241 1.50000 1.30806 0.86492 0.78862 0.77759 0.84690 1.19763 1.20826 1.20925 1.18376 0.87699 0.87240 0.87910 1.42217 1.10162 1.04026 1.81323 1.67605 1.07906 1.31465 1.24483 0.90658 0.90329 0.90595 0.82389 0.95568 0.94872 0.92758 0.74569 0.77645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.01 10.32 36.01 0.37 -0.64 15 2 C 0.32 6.01 7.64 -157.24 -1.20 4.81 15 3 N -0.56 -11.31 10.33 -10.81 -0.11 -11.42 15 4 C 0.15 3.13 10.97 -17.29 -0.19 2.94 15 5 C -0.20 -4.43 5.12 -104.15 -0.53 -4.97 15 6 C 0.07 1.60 4.62 -29.03 -0.13 1.47 15 7 C -0.51 -13.73 9.09 -34.44 -0.31 -14.04 15 8 H 0.06 1.52 7.74 -52.49 -0.41 1.11 15 9 C 0.06 1.65 5.46 -17.82 -0.10 1.55 15 10 N -0.89 -25.05 13.29 55.43 0.74 -24.31 15 11 Si 0.89 20.90 29.54 -169.99 -5.02 15.88 15 12 H -0.27 -6.39 7.11 56.52 0.40 -5.99 15 13 H -0.28 -6.57 7.11 56.52 0.40 -6.17 15 14 H -0.28 -6.52 7.11 56.52 0.40 -6.12 15 15 C 0.43 8.94 7.81 -154.78 -1.21 7.73 15 16 N -0.83 -14.65 8.98 31.24 0.28 -14.37 15 17 N -0.59 -11.65 10.37 -9.96 -0.10 -11.76 15 18 H 0.07 0.90 8.14 -51.93 -0.42 0.48 15 19 H 0.08 0.98 8.14 -51.93 -0.42 0.55 15 20 H 0.08 0.94 8.14 -51.93 -0.42 0.52 15 21 H 0.16 2.99 8.06 -52.49 -0.42 2.57 15 22 H 0.03 0.65 6.94 -51.93 -0.36 0.29 15 23 H 0.03 0.85 8.07 -51.93 -0.42 0.43 15 24 H 0.26 6.99 8.31 -40.82 -0.34 6.66 15 25 H 0.42 7.62 7.07 -40.82 -0.29 7.34 15 26 H 0.40 5.80 8.95 -40.82 -0.37 5.43 15 LS Contribution 234.42 15.07 3.53 3.53 Total: -1.00 -29.84 234.42 -6.66 -36.50 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -2.67 Total: 7.09 kcal Atomic # 6 Polarization: 2.16 SS G_CDS: -3.31 Total: -1.14 kcal Atomic # 7 Polarization: -62.66 SS G_CDS: 0.80 Total: -61.86 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 3.53 Total: 3.53 kcal Total: -29.84 -6.66 -36.50 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260526795.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.451 kcal (2) G-P(sol) polarization free energy of solvation -29.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds