Wall clock time and date at job start Mon Mar 30 2020 01:53:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31793 * 119.08460 * 2 1 4 4 C 1.32549 * 121.00745 * 179.73471 * 3 2 1 5 5 C 1.38119 * 119.19980 * 0.56185 * 4 3 2 6 6 C 1.50699 * 120.83256 * 179.72259 * 5 4 3 7 7 C 1.50706 * 109.46817 * 264.72312 * 6 5 4 8 8 H 1.07995 * 120.00167 * 359.72198 * 7 6 5 9 9 C 1.37879 * 119.99394 * 179.97438 * 7 6 5 10 10 N 1.31514 * 120.00338 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 119.99424 * 180.02562 * 9 7 6 12 12 H 1.48492 * 109.47487 * 359.97438 * 11 9 7 13 13 H 1.48500 * 109.47233 * 120.00158 * 11 9 7 14 14 H 1.48508 * 109.46883 * 239.99963 * 11 9 7 15 15 C 1.39625 * 118.33226 * 359.45520 * 5 4 3 16 16 N 1.38545 * 120.53106 * 180.25200 * 15 5 4 17 17 N 1.31747 * 119.08413 * 180.02562 * 2 1 3 18 18 H 1.09001 * 109.47087 * 269.98046 * 1 2 3 19 19 H 1.08996 * 109.47127 * 29.97463 * 1 2 3 20 20 H 1.09001 * 109.47410 * 149.98231 * 1 2 3 21 21 H 1.07998 * 120.39595 * 180.30540 * 4 3 2 22 22 H 1.09000 * 109.47247 * 144.72375 * 6 5 4 23 23 H 1.09001 * 109.47358 * 24.71801 * 6 5 4 24 24 H 0.96996 * 119.99730 * 179.97438 * 10 9 7 25 25 H 0.97004 * 119.99555 * 359.97438 * 16 15 5 26 26 H 0.96994 * 119.99918 * 179.97438 * 16 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1477 1.1517 0.0000 4 6 3.4724 1.1962 0.0053 5 6 4.1863 0.0139 -0.0010 6 6 5.6933 0.0216 -0.0016 7 6 6.1956 -0.0994 -1.4173 8 1 5.4939 -0.1789 -2.2344 9 6 7.5512 -0.1139 -1.6689 10 7 8.4058 -0.0226 -0.6734 11 14 8.1738 -0.2631 -3.4237 12 1 7.0190 -0.3509 -4.3530 13 1 8.9923 0.9290 -3.7616 14 1 9.0055 -1.4868 -3.5514 15 6 3.4768 -1.1886 -0.0010 16 7 4.1469 -2.4013 -0.0020 17 7 2.1474 -1.1513 -0.0005 18 1 -0.3633 -0.0004 1.0277 19 1 -0.3633 0.8902 -0.5134 20 1 -0.3634 -0.8898 -0.5141 21 1 3.9872 2.1456 0.0102 22 1 6.0612 -0.8185 0.5875 23 1 6.0521 0.9547 0.4327 24 1 9.3594 -0.0332 -0.8504 25 1 5.1168 -2.4194 -0.0030 26 1 3.6463 -3.2320 -0.0016 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260526795.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:02 Heat of formation + Delta-G solvation = 10.328170 kcal Electronic energy + Delta-G solvation = -11583.047534 eV Core-core repulsion = 9467.228615 eV Total energy + Delta-G solvation = -2115.818919 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.091 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.78305 -36.87998 -35.52938 -34.15941 -32.02619 -31.05682 -27.88077 -25.00545 -24.48230 -22.37529 -19.16972 -18.52997 -18.12101 -16.67458 -16.40397 -16.06180 -15.18914 -14.85803 -14.40559 -13.97445 -13.60816 -13.41439 -13.09208 -12.93978 -12.64343 -12.43133 -12.31096 -11.62284 -11.21329 -10.64369 -10.52477 -10.02926 -8.99659 -8.19472 -6.33263 0.26714 0.52706 1.38424 1.41690 1.52643 2.39262 2.53756 3.04136 3.10556 3.37706 3.63123 4.06258 4.39299 4.63800 4.69661 4.83302 4.95657 5.15062 5.33161 5.55930 5.64478 5.73008 6.01693 6.16293 6.40479 6.76773 6.89679 7.35917 7.46611 8.87615 Molecular weight = 193.09amu Principal moments of inertia in cm(-1) A = 0.055680 B = 0.009663 C = 0.009435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 502.748818 B = 2896.850180 C = 2966.889318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.316 3.684 3 N -0.575 5.575 4 C 0.151 3.849 5 C -0.233 4.233 6 C 0.080 3.920 7 C -0.523 4.523 8 H 0.044 0.956 9 C 0.016 3.984 10 N -0.922 5.922 11 Si 0.958 3.042 12 H -0.274 1.274 13 H -0.279 1.279 14 H -0.275 1.275 15 C 0.429 3.571 16 N -0.819 5.819 17 N -0.593 5.593 18 H 0.097 0.903 19 H 0.092 0.908 20 H 0.090 0.910 21 H 0.167 0.833 22 H 0.016 0.984 23 H 0.011 0.989 24 H 0.266 0.734 25 H 0.418 0.582 26 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.796 -2.504 0.780 10.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.047 3.953 3 N -0.294 5.294 4 C -0.008 4.008 5 C -0.243 4.243 6 C 0.042 3.958 7 C -0.561 4.561 8 H 0.062 0.938 9 C -0.183 4.183 10 N -0.561 5.561 11 Si 0.783 3.217 12 H -0.198 1.198 13 H -0.204 1.204 14 H -0.200 1.200 15 C 0.182 3.818 16 N -0.365 5.365 17 N -0.320 5.320 18 H 0.115 0.885 19 H 0.111 0.889 20 H 0.109 0.891 21 H 0.185 0.815 22 H 0.035 0.965 23 H 0.030 0.970 24 H 0.075 0.925 25 H 0.251 0.749 26 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -10.564 -2.468 0.818 10.880 hybrid contribution 1.980 -0.326 -0.758 2.145 sum -8.584 -2.795 0.061 9.028 Atomic orbital electron populations 1.20567 0.83192 1.04556 1.04626 1.23661 0.99282 0.82589 0.89752 1.68245 1.09657 1.30318 1.21223 1.22910 0.89269 0.98152 0.90478 1.21499 0.99864 0.93767 1.09159 1.17752 0.84965 0.96854 0.96254 1.21256 0.91466 1.50768 0.92635 0.93782 1.25727 0.97030 0.94649 1.00897 1.70045 1.02608 1.50783 1.32699 0.85512 0.78155 0.77969 0.80059 1.19815 1.20443 1.20047 1.18551 0.88270 0.87554 0.87440 1.42169 1.10081 1.04019 1.80184 1.67787 1.07138 1.31837 1.25201 0.88478 0.88918 0.89088 0.81542 0.96543 0.97018 0.92476 0.74876 0.75892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.71 10.32 71.24 0.73 -0.97 15 2 C 0.32 11.25 7.64 138.76 1.06 12.31 15 3 N -0.57 -22.25 10.33 -188.11 -1.94 -24.19 15 4 C 0.15 6.25 10.97 84.56 0.93 7.17 15 5 C -0.23 -10.30 5.12 -19.56 -0.10 -10.40 15 6 C 0.08 3.98 4.62 29.10 0.13 4.12 15 7 C -0.52 -28.11 9.09 25.60 0.23 -27.88 15 8 H 0.04 2.43 7.74 -2.91 -0.02 2.40 15 9 C 0.02 0.87 5.46 84.66 0.46 1.34 15 10 N -0.92 -52.07 13.29 21.45 0.28 -51.79 15 11 Si 0.96 42.67 29.54 68.60 2.03 44.70 15 12 H -0.27 -12.11 7.11 99.48 0.71 -11.40 15 13 H -0.28 -12.21 7.11 99.48 0.71 -11.50 15 14 H -0.27 -11.83 7.11 99.48 0.71 -11.12 15 15 C 0.43 17.36 7.81 133.16 1.04 18.40 15 16 N -0.82 -28.23 8.98 -55.09 -0.49 -28.72 15 17 N -0.59 -22.49 10.37 -185.44 -1.92 -24.41 15 18 H 0.10 1.96 8.14 -2.39 -0.02 1.94 15 19 H 0.09 1.99 8.14 -2.39 -0.02 1.97 15 20 H 0.09 1.93 8.14 -2.39 -0.02 1.91 15 21 H 0.17 6.35 8.06 -2.91 -0.02 6.33 15 22 H 0.02 0.83 6.94 -2.39 -0.02 0.82 15 23 H 0.01 0.61 8.07 -2.39 -0.02 0.59 15 24 H 0.27 14.16 8.31 -92.71 -0.77 13.39 15 25 H 0.42 15.09 7.07 -92.71 -0.66 14.44 15 26 H 0.41 11.46 8.95 -92.71 -0.83 10.63 15 Total: -1.00 -62.09 234.42 2.17 -59.92 By element: Atomic # 1 Polarization: 20.68 SS G_CDS: -0.28 Total: 20.41 kcal Atomic # 6 Polarization: -0.41 SS G_CDS: 4.49 Total: 4.09 kcal Atomic # 7 Polarization: -125.04 SS G_CDS: -4.08 Total: -129.11 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal Total: -62.09 2.17 -59.92 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260526795.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.248 kcal (2) G-P(sol) polarization free energy of solvation -62.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds