Wall clock time and date at job start Mon Mar 30 2020 01:49:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38621 * 120.79634 * 2 1 4 4 N 1.32324 * 119.10005 * 180.02562 * 3 2 1 5 5 C 1.31808 * 120.81917 * 359.97438 * 4 3 2 6 6 N 1.31779 * 121.75509 * 359.72460 * 5 4 3 7 7 C 1.32346 * 120.81772 * 0.57102 * 6 5 4 8 8 C 1.50701 * 120.44789 * 179.71724 * 7 6 5 9 9 H 1.08999 * 109.47018 * 164.71402 * 8 7 6 10 10 N 1.46906 * 109.47187 * 44.71953 * 8 7 6 11 11 C 1.50697 * 109.47065 * 284.72019 * 8 7 6 12 12 H 1.08002 * 119.99885 * 0.02562 * 11 8 7 13 13 C 1.37878 * 120.00198 * 180.02562 * 11 8 7 14 14 N 1.31517 * 119.99780 * 359.97438 * 13 11 8 15 15 Si 1.86790 * 120.00186 * 180.02562 * 13 11 8 16 16 H 1.48499 * 109.47294 * 359.97438 * 15 13 11 17 17 H 1.48497 * 109.47473 * 119.99747 * 15 13 11 18 18 H 1.48502 * 109.47060 * 240.00201 * 15 13 11 19 19 H 1.08996 * 109.46648 * 269.96978 * 1 2 3 20 20 H 1.08996 * 109.47398 * 29.97689 * 1 2 3 21 21 H 1.09004 * 109.46949 * 149.97644 * 1 2 3 22 22 H 1.07997 * 120.45238 * 0.04773 * 3 2 1 23 23 H 1.08004 * 119.11884 * 179.97438 * 5 4 3 24 24 H 1.00896 * 111.00309 * 176.04524 * 10 8 7 25 25 H 1.00902 * 110.99923 * 300.00687 * 10 8 7 26 26 H 0.97003 * 119.99844 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2167 1.1907 0.0000 4 7 3.5394 1.1516 -0.0005 5 6 4.1809 0.0001 -0.0005 6 7 3.5395 -1.1511 0.0054 7 6 2.2167 -1.1903 0.0002 8 6 1.4918 -2.5115 0.0006 9 1 0.4469 -2.3526 0.2670 10 7 2.1152 -3.4118 0.9799 11 6 1.5722 -3.1289 -1.3717 12 1 2.0961 -2.6161 -2.1647 13 6 0.9768 -4.3485 -1.6149 14 7 0.3392 -4.9733 -0.6491 15 14 1.0770 -5.1142 -3.3157 16 1 1.8445 -4.2181 -4.2176 17 1 1.7593 -6.4301 -3.2269 18 1 -0.2936 -5.3026 -3.8553 19 1 -0.3632 -0.0005 1.0277 20 1 -0.3634 0.8901 -0.5134 21 1 -0.3633 -0.8898 -0.5142 22 1 1.6972 2.1376 0.0008 23 1 5.2609 0.0002 -0.0014 24 1 1.6080 -4.2815 1.0457 25 1 3.0852 -3.5749 0.7549 26 1 -0.0794 -5.8315 -0.8201 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260529349.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:52 Heat of formation + Delta-G solvation = 14.729432 kcal Electronic energy + Delta-G solvation = -11842.299035 eV Core-core repulsion = 9726.670969 eV Total energy + Delta-G solvation = -2115.628066 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.091 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.85077 -37.08093 -34.58034 -34.38731 -32.53137 -28.49844 -28.15374 -25.95725 -23.60250 -22.42432 -18.86059 -18.44621 -17.70950 -16.54574 -15.84671 -15.74913 -15.22037 -14.71517 -14.48833 -13.89391 -13.75606 -13.52616 -13.00708 -12.88469 -12.75202 -12.05125 -12.04532 -11.58027 -11.35925 -10.73563 -10.02040 -9.94284 -9.23223 -8.17548 -6.41892 0.12771 0.32165 1.34353 1.37954 1.48344 2.33810 2.97095 3.03707 3.40151 3.43981 3.78653 4.08410 4.14859 4.59168 4.65562 4.80566 4.84081 5.09304 5.27790 5.42007 5.57548 5.69817 5.96899 6.25419 6.54400 6.85855 7.08297 7.32225 7.35509 8.78124 Molecular weight = 193.09amu Principal moments of inertia in cm(-1) A = 0.045840 B = 0.011648 C = 0.011381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.679687 B = 2403.328252 C = 2459.710759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.203 4.203 3 C 0.141 3.859 4 N -0.543 5.543 5 C 0.266 3.734 6 N -0.533 5.533 7 C 0.192 3.808 8 C 0.250 3.750 9 H 0.048 0.952 10 N -0.841 5.841 11 C -0.553 4.553 12 H 0.035 0.965 13 C 0.029 3.971 14 N -0.910 5.910 15 Si 0.959 3.041 16 H -0.279 1.279 17 H -0.277 1.277 18 H -0.273 1.273 19 H 0.081 0.919 20 H 0.098 0.902 21 H 0.057 0.943 22 H 0.202 0.798 23 H 0.215 0.785 24 H 0.347 0.653 25 H 0.322 0.678 26 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.550 8.205 0.184 8.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.208 4.208 3 C -0.025 4.025 4 N -0.257 5.257 5 C -0.022 4.022 6 N -0.247 5.247 7 C 0.046 3.954 8 C 0.139 3.861 9 H 0.066 0.934 10 N -0.370 5.370 11 C -0.593 4.593 12 H 0.053 0.947 13 C -0.172 4.172 14 N -0.549 5.549 15 Si 0.785 3.215 16 H -0.204 1.204 17 H -0.202 1.202 18 H -0.198 1.198 19 H 0.100 0.900 20 H 0.117 0.883 21 H 0.076 0.924 22 H 0.219 0.781 23 H 0.231 0.769 24 H 0.162 0.838 25 H 0.132 0.868 26 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.265 8.605 0.790 8.733 hybrid contribution -0.593 -1.381 -1.683 2.257 sum 0.673 7.224 -0.893 7.310 Atomic orbital electron populations 1.20672 0.88005 1.03777 1.03209 1.21836 1.00501 0.94546 1.03906 1.23592 0.89585 0.98592 0.90716 1.68387 1.10634 1.30879 1.15808 1.25412 1.02192 0.82687 0.91911 1.68163 1.10532 1.31656 1.14373 1.22225 0.89652 0.96834 0.86677 1.17949 0.92595 0.85290 0.90220 0.93446 1.59373 1.06266 1.20500 1.50831 1.21756 1.35359 1.05303 0.96916 0.94671 1.25628 0.93822 0.97064 1.00714 1.69818 1.35479 1.16334 1.33313 0.85493 0.78037 0.78106 0.79853 1.20446 1.20244 1.19799 0.90048 0.88339 0.92445 0.78125 0.76851 0.83790 0.86827 0.91993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.03 9.32 71.24 0.66 -2.37 15 2 C -0.20 -7.46 5.91 -19.69 -0.12 -7.57 15 3 C 0.14 4.37 11.01 84.71 0.93 5.30 15 4 N -0.54 -18.37 10.44 -200.03 -2.09 -20.45 15 5 C 0.27 9.53 12.29 180.88 2.22 11.75 15 6 N -0.53 -23.15 9.85 -188.08 -1.85 -25.00 15 7 C 0.19 8.61 5.70 42.56 0.24 8.85 15 8 C 0.25 12.62 2.66 43.42 0.12 12.73 15 9 H 0.05 2.50 6.06 -2.39 -0.01 2.48 15 10 N -0.84 -42.01 9.15 -174.95 -1.60 -43.61 15 11 C -0.55 -30.17 8.71 25.60 0.22 -29.94 15 12 H 0.03 2.00 7.74 -2.91 -0.02 1.98 15 13 C 0.03 1.53 5.38 84.65 0.46 1.99 15 14 N -0.91 -49.23 11.54 21.45 0.25 -48.98 15 15 Si 0.96 42.80 29.54 68.60 2.03 44.82 15 16 H -0.28 -12.63 7.11 99.48 0.71 -11.92 15 17 H -0.28 -12.07 7.11 99.48 0.71 -11.37 15 18 H -0.27 -11.71 7.11 99.48 0.71 -11.00 15 19 H 0.08 2.26 8.14 -2.39 -0.02 2.25 15 20 H 0.10 2.24 8.10 -2.39 -0.02 2.22 15 21 H 0.06 2.10 6.52 -2.38 -0.02 2.08 15 22 H 0.20 4.27 8.06 -2.91 -0.02 4.25 15 23 H 0.22 5.95 8.06 -2.91 -0.02 5.92 15 24 H 0.35 18.15 7.08 -89.70 -0.63 17.51 15 25 H 0.32 16.14 8.57 -89.69 -0.77 15.37 15 26 H 0.27 13.82 8.31 -92.71 -0.77 13.05 15 Total: -1.00 -60.94 229.44 1.28 -59.66 By element: Atomic # 1 Polarization: 33.02 SS G_CDS: -0.19 Total: 32.83 kcal Atomic # 6 Polarization: -4.00 SS G_CDS: 4.74 Total: 0.74 kcal Atomic # 7 Polarization: -132.75 SS G_CDS: -5.29 Total: -138.05 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.82 kcal Total: -60.94 1.28 -59.66 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260529349.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.390 kcal (2) G-P(sol) polarization free energy of solvation -60.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds